RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 Q5W150 140 aa10.6□□□□□ -0.71
LSM4-203ENST00000593829 ACYP2P14621 99 aa10.57□□□□□ -0.72
LSM4-203ENST00000593829 SPINK7P58062 85 aa10.57□□□□□ -0.72
LSM4-203ENST00000593829 RPL37P61927 97 aaKnown RBP10.54□□□□□ -0.72
LSM4-203ENST00000593829 DMAC1Q96GE9 116 aa10.53□□□□□ -0.72
LSM4-203ENST00000593829 C7orf65Q6ZTY9 151 aa10.52□□□□□ -0.73
LSM4-203ENST00000593829 KRTAP4-1Q9BYQ7 146 aa10.48□□□□□ -0.73
LSM4-203ENST00000593829 RBM12B-AS1Q9P1G2 102 aa10.48□□□□□ -0.73
LSM4-203ENST00000593829 LINC00313P59037 77 aa10.46□□□□□ -0.74
LSM4-203ENST00000593829 IGKV2-30P06310 120 aa10.42□□□□□ -0.74
LSM4-203ENST00000593829 C20orf166-AS1Q96NR2 134 aa10.41□□□□□ -0.74
LSM4-203ENST00000593829 A8MUU9 505 aa10.4□□□□□ -0.74
LSM4-203ENST00000593829 KRTAP16-1A8MUX0 517 aa10.37□□□□□ -0.75
LSM4-203ENST00000593829 A0A1B0GU69 56 aa10.33□□□□□ -0.76
LSM4-203ENST00000593829 SPATA8Q6RVD6 105 aa10.33□□□□□ -0.76
LSM4-203ENST00000593829 FAT4Q6V0I7 4981 aa10.28□□□□□ -0.76
LSM4-203ENST00000593829 UQCR11O14957 56 aa10.21□□□□□ -0.77
LSM4-203ENST00000593829 IGKV2D-30A0A075B6S6 120 aa10.19□□□□□ -0.78
LSM4-203ENST00000593829 LCE2AQ5TA79 106 aaPredicted RBP10.19□□□□□ -0.78
LSM4-203ENST00000593829 MIR22HGQ0VDD5 57 aa10.18□□□□□ -0.78
LSM4-203ENST00000593829 KRTAP19-2Q3LHN2 52 aa10.17□□□□□ -0.78
LSM4-203ENST00000593829 LCE2CQ5TA81 110 aa10.15□□□□□ -0.79
LSM4-203ENST00000593829 COX6B2Q6YFQ2 88 aa10.09□□□□□ -0.79
LSM4-203ENST00000593829 PRAC1Q96KF2 57 aa10.05□□□□□ -0.8
LSM4-203ENST00000593829 MT1HP80294 61 aa10.01□□□□□ -0.81
LSM4-203ENST00000593829 ADM2Q7Z4H4 148 aa10.01□□□□□ -0.81
LSM4-203ENST00000593829 LINC01554Q52M75 96 aa9.95□□□□□ -0.82
LSM4-203ENST00000593829 M0R2T5 61 aa9.88□□□□□ -0.83
LSM4-203ENST00000593829 FLGP20930 4061 aaPredicted RBP9.84□□□□□ -0.83
LSM4-203ENST00000593829 CSAG1Q6PB30 78 aa9.79□□□□□ -0.84
LSM4-203ENST00000593829 H0YAA0 97 aa9.77□□□□□ -0.85
LSM4-203ENST00000593829 KRTAP10-6P60371 365 aaPredicted RBP9.76□□□□□ -0.85
LSM4-203ENST00000593829 LORP23490 312 aaPredicted RBP9.74□□□□□ -0.85
LSM4-203ENST00000593829 KRTAP3-1Q9BYR8 98 aa9.72□□□□□ -0.85
LSM4-203ENST00000593829 A0A1B0GU33 70 aa9.71□□□□□ -0.86
LSM4-203ENST00000593829 H1FX-AS1Q4G0G2 97 aa9.69□□□□□ -0.86
LSM4-203ENST00000593829 KRTAP9-2Q9BYQ4 174 aa9.64□□□□□ -0.87
LSM4-203ENST00000593829 KRTAP25-1Q3LHN0 102 aa9.59□□□□□ -0.87
LSM4-203ENST00000593829 LCE2DQ5TA82 110 aaPredicted RBP9.56□□□□□ -0.88
LSM4-203ENST00000593829 KRTAP9-8Q9BYQ0 159 aa9.52□□□□□ -0.89
LSM4-203ENST00000593829 K7ERS5 55 aa9.5□□□□□ -0.89
LSM4-203ENST00000593829 MT2AP02795 61 aa9.42□□□□□ -0.9
LSM4-203ENST00000593829 MT1FP04733 61 aa9.35□□□□□ -0.91
LSM4-203ENST00000593829 KRTAP10-10P60014 251 aa9.33□□□□□ -0.92
LSM4-203ENST00000593829 ROMO1P60602 79 aa9.33□□□□□ -0.92
LSM4-203ENST00000593829 S4R3F8 94 aa9.33□□□□□ -0.92
LSM4-203ENST00000593829 KRTAP3-3Q9BYR6 98 aa9.31□□□□□ -0.92
LSM4-203ENST00000593829 H3BS24 57 aa9.27□□□□□ -0.93
LSM4-203ENST00000593829 KRTAP3-2Q9BYR7 98 aa9.25□□□□□ -0.93
LSM4-203ENST00000593829 KRTAP9-3Q9BYQ3 159 aa9.21□□□□□ -0.93
LSM4-203ENST00000593829 KRTAP9-6A0A140TA67 174 aa9.21□□□□□ -0.94
LSM4-203ENST00000593829 KRTAP13-4Q3LI77 160 aa9.19□□□□□ -0.94
LSM4-203ENST00000593829 FSIP2Q5CZC0 6907 aa9.18□□□□□ -0.94
LSM4-203ENST00000593829 CRCT1Q9UGL9 99 aa9.17□□□□□ -0.94
LSM4-203ENST00000593829 CRIPTQ9P021 101 aa9.13□□□□□ -0.95
LSM4-203ENST00000593829 LCE2BO14633 110 aa9.09□□□□□ -0.95
LSM4-203ENST00000593829 A0A0D9SG42 100 aa9.06□□□□□ -0.96
LSM4-203ENST00000593829 USH2AO75445 5202 aa9.03□□□□□ -0.96
LSM4-203ENST00000593829 P0C880 135 aa9.03□□□□□ -0.96
LSM4-203ENST00000593829 KRTAP12-2P59991 146 aa8.93□□□□□ -0.98
LSM4-203ENST00000593829 KRTAP12-1P59990 96 aa8.91□□□□□ -0.98
LSM4-203ENST00000593829 M0QZ58 72 aa8.89□□□□□ -0.99
LSM4-203ENST00000593829 SPINT4Q6UDR6 99 aa8.88□□□□□ -0.99
LSM4-203ENST00000593829 KRTAP19-1Q8IUB9 90 aa8.88□□□□□ -0.99
LSM4-203ENST00000593829 SSPOA2VEC9 5147 aa8.86□□□□□ -0.99
LSM4-203ENST00000593829 C10orf95Q9H7T3 257 aa8.85□□□□□ -0.99
LSM4-203ENST00000593829 SPRR2GQ9BYE4 73 aa8.82□□□□□ -1
LSM4-203ENST00000593829 KRTAP15-1Q3LI76 137 aa8.81□□□□□ -1
LSM4-203ENST00000593829 KRTAP19-6Q3LI70 58 aa8.73□□□□□ -1.01
LSM4-203ENST00000593829 KRTAP19-8Q3LI54 63 aa8.71□□□□□ -1.02
LSM4-203ENST00000593829 MT1BP07438 61 aa8.66□□□□□ -1.02
LSM4-203ENST00000593829 FCGBPQ9Y6R7 5405 aaPredicted RBP8.65□□□□□ -1.02
LSM4-203ENST00000593829 R4GN34 69 aa8.57□□□□□ -1.04
LSM4-203ENST00000593829 NDUFAF8A1L188 74 aa8.55□□□□□ -1.04
LSM4-203ENST00000593829 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.52□□□□□ -1.05
LSM4-203ENST00000593829 KRTAP10-5P60370 271 aa8.4□□□□□ -1.06
LSM4-203ENST00000593829 PLAC4Q8WY50 150 aa8.38□□□□□ -1.07
LSM4-203ENST00000593829 KRTAP9-7A8MTY7 169 aa8.32□□□□□ -1.08
LSM4-203ENST00000593829 MACF1Q9UPN3 7388 aaKnown RBP8.29□□□□□ -1.08
LSM4-203ENST00000593829 PP632Q6XCG6 107 aa8.27□□□□□ -1.09
LSM4-203ENST00000593829 PRO2289Q9P1D8 64 aa8.25□□□□□ -1.09
LSM4-203ENST00000593829 MT1XP80297 61 aa8.21□□□□□ -1.1
LSM4-203ENST00000593829 SYNE2Q8WXH0 6885 aaKnown RBP8.14□□□□□ -1.11
LSM4-203ENST00000593829 KRTAP6-3Q3LI67 103 aa8.08□□□□□ -1.12
LSM4-203ENST00000593829 CAMK2N1Q7Z7J9 78 aa8.07□□□□□ -1.12
LSM4-203ENST00000593829 KRTAP23-1A1A580 65 aa8.02□□□□□ -1.13
LSM4-203ENST00000593829 LUZP6Q538Z0 58 aa7.95□□□□□ -1.14
LSM4-203ENST00000593829 TNP1P09430 55 aa7.88□□□□□ -1.15
LSM4-203ENST00000593829 KRTAP5-9P26371 169 aa7.84□□□□□ -1.15
LSM4-203ENST00000593829 KRTAP10-7P60409 375 aaPredicted RBP7.84□□□□□ -1.16
LSM4-203ENST00000593829 KMT2DO14686 5537 aa7.82□□□□□ -1.16
LSM4-203ENST00000593829 SPRR5A0A1B0GTR4 108 aa7.81□□□□□ -1.16
LSM4-203ENST00000593829 KRTAP10-12P60413 245 aa7.8□□□□□ -1.16
LSM4-203ENST00000593829 KRTAP8-1Q8IUC2 63 aa7.78□□□□□ -1.16
LSM4-203ENST00000593829 A0A0A0MQY5 61 aa7.74□□□□□ -1.17
LSM4-203ENST00000593829 KRTAP4-8A0A0G2JLE6 195 aa7.74□□□□□ -1.17
LSM4-203ENST00000593829 KRTAP4-8Q9BYQ9 185 aa7.74□□□□□ -1.17
LSM4-203ENST00000593829 MUC12Q9UKN1 5478 aa7.7□□□□□ -1.18
LSM4-203ENST00000593829 SPRR2FQ96RM1 72 aa7.7□□□□□ -1.18
LSM4-203ENST00000593829 NEBP20929 6669 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms