RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 DNAH3Q8TD57 4116 aa7.42□□□□□ -1.22
RETREG3-208ENST00000589797 DNAH6Q9C0G6 4158 aa7.41□□□□□ -1.22
RETREG3-208ENST00000589797 KRTAP4-5Q9BYR2 181 aa7.41□□□□□ -1.22
RETREG3-208ENST00000589797 TPRXLQ17RH7 258 aa7.41□□□□□ -1.22
RETREG3-208ENST00000589797 KIAA1109Q2LD37 5005 aa7.39□□□□□ -1.23
RETREG3-208ENST00000589797 RYR1P21817 5038 aa7.33□□□□□ -1.24
RETREG3-208ENST00000589797 HYDINQ4G0P3 5121 aa7.33□□□□□ -1.24
RETREG3-208ENST00000589797 MT1HL1P0DM35 61 aa7.33□□□□□ -1.24
RETREG3-208ENST00000589797 C10orf95Q9H7T3 257 aa7.31□□□□□ -1.24
RETREG3-208ENST00000589797 VPS13BQ7Z7G8 4022 aa7.31□□□□□ -1.24
RETREG3-208ENST00000589797 FAT3Q8TDW7 4589 aa7.29□□□□□ -1.24
RETREG3-208ENST00000589797 DYNC2H1Q8NCM8 4307 aaKnown RBP7.28□□□□□ -1.24
RETREG3-208ENST00000589797 KRTAP25-1Q3LHN0 102 aa7.27□□□□□ -1.25
RETREG3-208ENST00000589797 LRP1Q07954 4544 aaKnown RBP7.26□□□□□ -1.25
RETREG3-208ENST00000589797 PKHD1P08F94 4074 aa7.24□□□□□ -1.25
RETREG3-208ENST00000589797 SACSQ9NZJ4 4579 aa7.23□□□□□ -1.25
RETREG3-208ENST00000589797 RYR3Q15413 4870 aa7.21□□□□□ -1.26
RETREG3-208ENST00000589797 HECTD4Q9Y4D8 3996 aa7.19□□□□□ -1.26
RETREG3-208ENST00000589797 NDUFAF8A1L188 74 aa7.17□□□□□ -1.26
RETREG3-208ENST00000589797 APOBP04114 4563 aaKnown RBP7.17□□□□□ -1.26
RETREG3-208ENST00000589797 ALMS1Q8TCU4 4167 aa7.15□□□□□ -1.26
RETREG3-208ENST00000589797 KMT2CQ8NEZ4 4911 aaKnown RBP7.14□□□□□ -1.27
RETREG3-208ENST00000589797 KRTAP13-4Q3LI77 160 aa7.13□□□□□ -1.27
RETREG3-208ENST00000589797 PLAC4Q8WY50 150 aa7.12□□□□□ -1.27
RETREG3-208ENST00000589797 KRTAP10-6P60371 365 aaPredicted RBP7.08□□□□□ -1.28
RETREG3-208ENST00000589797 KRTAP12-2P59991 146 aa7.08□□□□□ -1.28
RETREG3-208ENST00000589797 FAT2Q9NYQ8 4349 aa7.08□□□□□ -1.28
RETREG3-208ENST00000589797 LUZP6Q538Z0 58 aa7.05□□□□□ -1.28
RETREG3-208ENST00000589797 KRTAP3-3Q9BYR6 98 aa7.04□□□□□ -1.28
RETREG3-208ENST00000589797 KRTAP17-1Q9BYP8 105 aa7.02□□□□□ -1.29
RETREG3-208ENST00000589797 KRTAP10-10P60014 251 aa6.99□□□□□ -1.29
RETREG3-208ENST00000589797 KRTAP12-1P59990 96 aa6.94□□□□□ -1.3
RETREG3-208ENST00000589797 RYR2Q92736 4967 aa6.94□□□□□ -1.3
RETREG3-208ENST00000589797 KRTAP3-2Q9BYR7 98 aa6.94□□□□□ -1.3
RETREG3-208ENST00000589797 LRP2P98164 4655 aa6.91□□□□□ -1.3
RETREG3-208ENST00000589797 TNP1P09430 55 aa6.88□□□□□ -1.31
RETREG3-208ENST00000589797 PKD1P98161 4303 aa6.81□□□□□ -1.32
RETREG3-208ENST00000589797 HERC2O95714 4834 aa6.78□□□□□ -1.32
RETREG3-208ENST00000589797 LORP23490 312 aaPredicted RBP6.77□□□□□ -1.33
RETREG3-208ENST00000589797 KRTAP4-1Q9BYQ7 146 aa6.76□□□□□ -1.33
RETREG3-208ENST00000589797 A0A0A0MQY5 61 aa6.76□□□□□ -1.33
RETREG3-208ENST00000589797 HSPG2P98160 4391 aa6.71□□□□□ -1.34
RETREG3-208ENST00000589797 EPPK1P58107 5090 aaKnown RBP6.69□□□□□ -1.34
RETREG3-208ENST00000589797 LPAP08519 4548 aa6.66□□□□□ -1.34
RETREG3-208ENST00000589797 PP632Q6XCG6 107 aa6.55□□□□□ -1.36
RETREG3-208ENST00000589797 ABCA13Q86UQ4 5058 aa6.47□□□□□ -1.37
RETREG3-208ENST00000589797 PCLOQ9Y6V0 5065 aa6.44□□□□□ -1.38
RETREG3-208ENST00000589797 MUC2Q02817 5179 aa6.43□□□□□ -1.38
RETREG3-208ENST00000589797 PKHD1L1Q86WI1 4243 aa6.42□□□□□ -1.38
RETREG3-208ENST00000589797 PRO2289Q9P1D8 64 aa6.35□□□□□ -1.39
RETREG3-208ENST00000589797 HERC1Q15751 4861 aa6.34□□□□□ -1.39
RETREG3-208ENST00000589797 RNF213Q63HN8 5207 aa6.33□□□□□ -1.4
RETREG3-208ENST00000589797 TNXBP22105 4242 aa6.32□□□□□ -1.4
RETREG3-208ENST00000589797 BIRC6Q9NR09 4857 aa6.31□□□□□ -1.4
RETREG3-208ENST00000589797 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
RETREG3-208ENST00000589797 MT1HP80294 61 aa6.23□□□□□ -1.41
RETREG3-208ENST00000589797 FAT4Q6V0I7 4981 aa6.21□□□□□ -1.41
RETREG3-208ENST00000589797 UBR4Q5T4S7 5183 aa6.15□□□□□ -1.43
RETREG3-208ENST00000589797 MT2AP02795 61 aa6.13□□□□□ -1.43
RETREG3-208ENST00000589797 MT1FP04733 61 aa6.12□□□□□ -1.43
RETREG3-208ENST00000589797 FSIP2Q5CZC0 6907 aa6.12□□□□□ -1.43
RETREG3-208ENST00000589797 LCE3AQ5TA76 89 aa6.1□□□□□ -1.43
RETREG3-208ENST00000589797 KRTAP10-12P60413 245 aa6.06□□□□□ -1.44
RETREG3-208ENST00000589797 SPRR2GQ9BYE4 73 aa5.97□□□□□ -1.45
RETREG3-208ENST00000589797 KRTAP19-1Q8IUB9 90 aa5.95□□□□□ -1.46
RETREG3-208ENST00000589797 LCE2CQ5TA81 110 aa5.95□□□□□ -1.46
RETREG3-208ENST00000589797 KRTAP12-3P60328 96 aa5.94□□□□□ -1.46
RETREG3-208ENST00000589797 MUC17Q685J3 4493 aa5.93□□□□□ -1.46
RETREG3-208ENST00000589797 KRTAP19-2Q3LHN2 52 aa5.9□□□□□ -1.47
RETREG3-208ENST00000589797 HMCN2Q8NDA2 5059 aa5.83□□□□□ -1.48
RETREG3-208ENST00000589797 FLGP20930 4061 aaPredicted RBP5.81□□□□□ -1.48
RETREG3-208ENST00000589797 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
RETREG3-208ENST00000589797 CRCT1Q9UGL9 99 aa5.8□□□□□ -1.48
RETREG3-208ENST00000589797 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
RETREG3-208ENST00000589797 KRTAP23-1A1A580 65 aa5.69□□□□□ -1.5
RETREG3-208ENST00000589797 MT1BP07438 61 aa5.67□□□□□ -1.5
RETREG3-208ENST00000589797 MT1XP80297 61 aa5.63□□□□□ -1.51
RETREG3-208ENST00000589797 KRTAP19-8Q3LI54 63 aa5.61□□□□□ -1.51
RETREG3-208ENST00000589797 KRTAP10-5P60370 271 aa5.59□□□□□ -1.51
RETREG3-208ENST00000589797 USH2AO75445 5202 aa5.59□□□□□ -1.51
RETREG3-208ENST00000589797 KRTAP19-5Q3LI72 72 aa5.58□□□□□ -1.52
RETREG3-208ENST00000589797 KRTAP9-3Q9BYQ3 159 aa5.58□□□□□ -1.52
RETREG3-208ENST00000589797 KRTAP4-8A0A0G2JLE6 195 aa5.57□□□□□ -1.52
RETREG3-208ENST00000589797 KRTAP4-8Q9BYQ9 185 aa5.57□□□□□ -1.52
RETREG3-208ENST00000589797 KRTAP8-1Q8IUC2 63 aa5.56□□□□□ -1.52
RETREG3-208ENST00000589797 LCE2BO14633 110 aa5.5□□□□□ -1.53
RETREG3-208ENST00000589797 OBSCNQ5VST9 7968 aa5.48□□□□□ -1.53
RETREG3-208ENST00000589797 KMT2DO14686 5537 aa5.35□□□□□ -1.55
RETREG3-208ENST00000589797 SYNE1Q8NF91 8797 aaKnown RBP5.33□□□□□ -1.56
RETREG3-208ENST00000589797 SPRR2FQ96RM1 72 aa5.32□□□□□ -1.56
RETREG3-208ENST00000589797 LCE3CQ5T5A8 94 aa5.31□□□□□ -1.56
RETREG3-208ENST00000589797 DSTQ03001 7570 aaKnown RBP5.3□□□□□ -1.56
RETREG3-208ENST00000589797 INE1O15225 51 aa5.29□□□□□ -1.56
RETREG3-208ENST00000589797 KRTAP4-7Q9BYR0 210 aa5.26□□□□□ -1.57
RETREG3-208ENST00000589797 FCGBPQ9Y6R7 5405 aaPredicted RBP5.2□□□□□ -1.58
RETREG3-208ENST00000589797 LCE2AQ5TA79 106 aaPredicted RBP5.2□□□□□ -1.58
RETREG3-208ENST00000589797 SPRR5A0A1B0GTR4 108 aa5.1□□□□□ -1.59
RETREG3-208ENST00000589797 MT1GP13640 62 aa5.07□□□□□ -1.6
RETREG3-208ENST00000589797 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
RETREG3-208ENST00000589797 SYNE2Q8WXH0 6885 aaKnown RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms