RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 MT1FP04733 61 aa5.07□□□□□ -1.6
SMARCA4-213ENST00000587988 CSAG1Q6PB30 78 aa5.06□□□□□ -1.6
SMARCA4-213ENST00000587988 CYSTM1Q9H1C7 97 aa5.04□□□□□ -1.6
SMARCA4-213ENST00000587988 KRTAP10-10P60014 251 aa5.03□□□□□ -1.6
SMARCA4-213ENST00000587988 NDUFC1O43677 76 aa5.02□□□□□ -1.61
SMARCA4-213ENST00000587988 LCE2DQ5TA82 110 aaPredicted RBP5.02□□□□□ -1.61
SMARCA4-213ENST00000587988 SPANXA2-OT1Q8N9U9 137 aa5.02□□□□□ -1.61
SMARCA4-213ENST00000587988 KRTAP9-2Q9BYQ4 174 aa5.02□□□□□ -1.61
SMARCA4-213ENST00000587988 CCDC179H3BU77 68 aa5□□□□□ -1.61
SMARCA4-213ENST00000587988 ACYP2P14621 99 aa5□□□□□ -1.61
SMARCA4-213ENST00000587988 H7BZZ5 65 aa4.99□□□□□ -1.61
SMARCA4-213ENST00000587988 KRTAP9-3Q9BYQ3 159 aa4.98□□□□□ -1.61
SMARCA4-213ENST00000587988 CHKB-CPT1BH3BT56 60 aa4.91□□□□□ -1.62
SMARCA4-213ENST00000587988 H0YAA0 97 aa4.9□□□□□ -1.63
SMARCA4-213ENST00000587988 LCE2BO14633 110 aa4.9□□□□□ -1.63
SMARCA4-213ENST00000587988 ADM2Q7Z4H4 148 aa4.88□□□□□ -1.63
SMARCA4-213ENST00000587988 COA5Q86WW8 74 aa4.88□□□□□ -1.63
SMARCA4-213ENST00000587988 SPTSSBQ8NFR3 76 aa4.86□□□□□ -1.63
SMARCA4-213ENST00000587988 KRTAP19-1Q8IUB9 90 aa4.84□□□□□ -1.63
SMARCA4-213ENST00000587988 KRTAP3-2Q9BYR7 98 aa4.84□□□□□ -1.63
SMARCA4-213ENST00000587988 P0C880 135 aa4.83□□□□□ -1.64
SMARCA4-213ENST00000587988 SPRR2GQ9BYE4 73 aa4.81□□□□□ -1.64
SMARCA4-213ENST00000587988 ATP5EP56381 51 aaPredicted RBP4.79□□□□□ -1.64
SMARCA4-213ENST00000587988 CRIPTQ9P021 101 aa4.79□□□□□ -1.64
SMARCA4-213ENST00000587988 TMEM258P61165 79 aa4.78□□□□□ -1.64
SMARCA4-213ENST00000587988 CRCT1Q9UGL9 99 aa4.78□□□□□ -1.64
SMARCA4-213ENST00000587988 KRTAP9-6A0A140TA67 174 aa4.75□□□□□ -1.65
SMARCA4-213ENST00000587988 KRTAP19-8Q3LI54 63 aa4.74□□□□□ -1.65
SMARCA4-213ENST00000587988 PCP4P48539 62 aa4.73□□□□□ -1.65
SMARCA4-213ENST00000587988 USH2AO75445 5202 aa4.73□□□□□ -1.65
SMARCA4-213ENST00000587988 MT1BP07438 61 aa4.72□□□□□ -1.65
SMARCA4-213ENST00000587988 R4GN34 69 aa4.72□□□□□ -1.65
SMARCA4-213ENST00000587988 FSIP2Q5CZC0 6907 aa4.72□□□□□ -1.65
SMARCA4-213ENST00000587988 M0QZ58 72 aa4.7□□□□□ -1.66
SMARCA4-213ENST00000587988 Q5VV11 94 aa4.7□□□□□ -1.66
SMARCA4-213ENST00000587988 KRTAP19-6Q3LI70 58 aa4.66□□□□□ -1.66
SMARCA4-213ENST00000587988 SEC61GP60059 68 aa4.65□□□□□ -1.67
SMARCA4-213ENST00000587988 SERP1Q9Y6X1 66 aa4.65□□□□□ -1.67
SMARCA4-213ENST00000587988 SSPOA2VEC9 5147 aa4.64□□□□□ -1.67
SMARCA4-213ENST00000587988 KRTAP13-4Q3LI77 160 aa4.64□□□□□ -1.67
SMARCA4-213ENST00000587988 LINC01554Q52M75 96 aa4.63□□□□□ -1.67
SMARCA4-213ENST00000587988 A0A1B0GU69 56 aa4.61□□□□□ -1.67
SMARCA4-213ENST00000587988 LINC01558Q9Y6Z2 57 aa4.59□□□□□ -1.67
SMARCA4-213ENST00000587988 A0A1B0GU33 70 aa4.58□□□□□ -1.68
SMARCA4-213ENST00000587988 SPATA8Q6RVD6 105 aa4.56□□□□□ -1.68
SMARCA4-213ENST00000587988 PLAC4Q8WY50 150 aa4.56□□□□□ -1.68
SMARCA4-213ENST00000587988 KRTAP10-5P60370 271 aa4.54□□□□□ -1.68
SMARCA4-213ENST00000587988 A6NN06 94 aa4.53□□□□□ -1.68
SMARCA4-213ENST00000587988 PRR15LQ9BU68 103 aa4.52□□□□□ -1.69
SMARCA4-213ENST00000587988 A0A0D9SG42 100 aa4.5□□□□□ -1.69
SMARCA4-213ENST00000587988 MT1XP80297 61 aa4.49□□□□□ -1.69
SMARCA4-213ENST00000587988 FCGBPQ9Y6R7 5405 aaPredicted RBP4.49□□□□□ -1.69
SMARCA4-213ENST00000587988 RPS28P62857 69 aaKnown RBP4.47□□□□□ -1.69
SMARCA4-213ENST00000587988 Q1T7F1 81 aa4.47□□□□□ -1.69
SMARCA4-213ENST00000587988 SMIM26A0A096LP01 95 aa4.46□□□□□ -1.7
SMARCA4-213ENST00000587988 A8MU10 97 aa4.45□□□□□ -1.7
SMARCA4-213ENST00000587988 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.45□□□□□ -1.7
SMARCA4-213ENST00000587988 V9GYY9 64 aa4.45□□□□□ -1.7
SMARCA4-213ENST00000587988 PSPHP1O15172 72 aa4.43□□□□□ -1.7
SMARCA4-213ENST00000587988 PRO2289Q9P1D8 64 aa4.43□□□□□ -1.7
SMARCA4-213ENST00000587988 KRTAP12-1P59990 96 aa4.42□□□□□ -1.7
SMARCA4-213ENST00000587988 UQCR11O14957 56 aa4.4□□□□□ -1.71
SMARCA4-213ENST00000587988 KRTAP12-2P59991 146 aa4.4□□□□□ -1.71
SMARCA4-213ENST00000587988 SPINT4Q6UDR6 99 aa4.4□□□□□ -1.71
SMARCA4-213ENST00000587988 CAMK2N1Q7Z7J9 78 aa4.37□□□□□ -1.71
SMARCA4-213ENST00000587988 MIR22HGQ0VDD5 57 aa4.34□□□□□ -1.71
SMARCA4-213ENST00000587988 KRTAP10-7P60409 375 aaPredicted RBP4.31□□□□□ -1.72
SMARCA4-213ENST00000587988 MACF1Q9UPN3 7388 aaKnown RBP4.3□□□□□ -1.72
SMARCA4-213ENST00000587988 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
SMARCA4-213ENST00000587988 A6NED7 52 aa4.27□□□□□ -1.73
SMARCA4-213ENST00000587988 KRTAP10-12P60413 245 aa4.26□□□□□ -1.73
SMARCA4-213ENST00000587988 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
SMARCA4-213ENST00000587988 KRTAP4-8A0A0G2JLE6 195 aa4.23□□□□□ -1.73
SMARCA4-213ENST00000587988 KRTAP4-8Q9BYQ9 185 aa4.23□□□□□ -1.73
SMARCA4-213ENST00000587988 C10orf95Q9H7T3 257 aa4.21□□□□□ -1.74
SMARCA4-213ENST00000587988 SYNE2Q8WXH0 6885 aaKnown RBP4.21□□□□□ -1.74
SMARCA4-213ENST00000587988 KRTAP8-1Q8IUC2 63 aa4.17□□□□□ -1.74
SMARCA4-213ENST00000587988 KMT2DO14686 5537 aa4.17□□□□□ -1.74
SMARCA4-213ENST00000587988 K7ERS5 55 aa4.16□□□□□ -1.74
SMARCA4-213ENST00000587988 KRTAP5-9P26371 169 aa4.16□□□□□ -1.74
SMARCA4-213ENST00000587988 CDC42SE1Q9NRR8 79 aa4.14□□□□□ -1.75
SMARCA4-213ENST00000587988 TNP1P09430 55 aa4.11□□□□□ -1.75
SMARCA4-213ENST00000587988 SPRR2FQ96RM1 72 aa4.11□□□□□ -1.75
SMARCA4-213ENST00000587988 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
SMARCA4-213ENST00000587988 KRTAP19-7Q3SYF9 63 aa4.01□□□□□ -1.77
SMARCA4-213ENST00000587988 KRTAP25-1Q3LHN0 102 aa4□□□□□ -1.77
SMARCA4-213ENST00000587988 SPRR2EP22531 72 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 SPRR2BP35325 72 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 SPRR2AP35326 72 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 KRTAP19-5Q3LI72 72 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 LCE1AQ5T7P2 110 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 BRK1Q8WUW1 75 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 MUC12Q9UKN1 5478 aa3.98□□□□□ -1.77
SMARCA4-213ENST00000587988 ROMO1P60602 79 aa3.97□□□□□ -1.77
SMARCA4-213ENST00000587988 MT1EP04732 61 aa3.96□□□□□ -1.78
SMARCA4-213ENST00000587988 NEBP20929 6669 aa3.89□□□□□ -1.79
SMARCA4-213ENST00000587988 KRTAP23-1A1A580 65 aa3.86□□□□□ -1.79
SMARCA4-213ENST00000587988 KRTAP12-3P60328 96 aa3.86□□□□□ -1.79
SMARCA4-213ENST00000587988 KRTAP19-3Q7Z4W3 81 aa3.86□□□□□ -1.79
SMARCA4-213ENST00000587988 MDN1Q9NU22 5596 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 290.2 ms