RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 HERC1Q15751 4861 aa5.53□□□□□ -1.52
RFFL-212ENST00000584655 RNF213Q63HN8 5207 aa5.49□□□□□ -1.53
RFFL-212ENST00000584655 KRTAP10-8P60410 259 aa5.48□□□□□ -1.53
RFFL-212ENST00000584655 CSAG1Q6PB30 78 aa5.47□□□□□ -1.53
RFFL-212ENST00000584655 KRTAP13-3Q3SY46 172 aa5.46□□□□□ -1.53
RFFL-212ENST00000584655 MT1HL1P0DM35 61 aa5.46□□□□□ -1.54
RFFL-212ENST00000584655 BIRC6Q9NR09 4857 aa5.46□□□□□ -1.54
RFFL-212ENST00000584655 XP32Q5T750 250 aa5.46□□□□□ -1.54
RFFL-212ENST00000584655 A0A0D9SG42 100 aa5.45□□□□□ -1.54
RFFL-212ENST00000584655 DMAC1Q96GE9 116 aa5.45□□□□□ -1.54
RFFL-212ENST00000584655 LINC01554Q52M75 96 aa5.4□□□□□ -1.54
RFFL-212ENST00000584655 SPATA8Q6RVD6 105 aa5.39□□□□□ -1.55
RFFL-212ENST00000584655 A8MUU9 505 aa5.39□□□□□ -1.55
RFFL-212ENST00000584655 PCLOQ9Y6V0 5065 aa5.38□□□□□ -1.55
RFFL-212ENST00000584655 COX6B2Q6YFQ2 88 aa5.38□□□□□ -1.55
RFFL-212ENST00000584655 C20orf166-AS1Q96NR2 134 aa5.37□□□□□ -1.55
RFFL-212ENST00000584655 TNXBP22105 4242 aa5.37□□□□□ -1.55
RFFL-212ENST00000584655 KRTAP3-1Q9BYR8 98 aa5.36□□□□□ -1.55
RFFL-212ENST00000584655 FAT4Q6V0I7 4981 aa5.34□□□□□ -1.55
RFFL-212ENST00000584655 K7ERS5 55 aa5.33□□□□□ -1.56
RFFL-212ENST00000584655 RPL37P61927 97 aaKnown RBP5.33□□□□□ -1.56
RFFL-212ENST00000584655 UBR4Q5T4S7 5183 aa5.33□□□□□ -1.56
RFFL-212ENST00000584655 RPS29P62273 56 aaKnown RBP5.32□□□□□ -1.56
RFFL-212ENST00000584655 H3BS24 57 aa5.31□□□□□ -1.56
RFFL-212ENST00000584655 A0A1B0GU33 70 aa5.3□□□□□ -1.56
RFFL-212ENST00000584655 S4R3F8 94 aa5.25□□□□□ -1.57
RFFL-212ENST00000584655 SPINT4Q6UDR6 99 aa5.22□□□□□ -1.57
RFFL-212ENST00000584655 P0C880 135 aa5.2□□□□□ -1.58
RFFL-212ENST00000584655 H0YAA0 97 aa5.2□□□□□ -1.58
RFFL-212ENST00000584655 M0R2T5 61 aa5.19□□□□□ -1.58
RFFL-212ENST00000584655 KRTAP4-1Q9BYQ7 146 aa5.17□□□□□ -1.58
RFFL-212ENST00000584655 H1FX-AS1Q4G0G2 97 aa5.16□□□□□ -1.58
RFFL-212ENST00000584655 SEC61BP60468 96 aaKnown RBP5.15□□□□□ -1.59
RFFL-212ENST00000584655 TPRXLQ17RH7 258 aa5.14□□□□□ -1.59
RFFL-212ENST00000584655 FSIP2Q5CZC0 6907 aa5.11□□□□□ -1.59
RFFL-212ENST00000584655 C10orf95Q9H7T3 257 aa5.1□□□□□ -1.59
RFFL-212ENST00000584655 KRTAP25-1Q3LHN0 102 aa5.09□□□□□ -1.59
RFFL-212ENST00000584655 KRTAP13-4Q3LI77 160 aa5.07□□□□□ -1.6
RFFL-212ENST00000584655 KRTAP3-3Q9BYR6 98 aa5.07□□□□□ -1.6
RFFL-212ENST00000584655 M0QZ58 72 aa5.06□□□□□ -1.6
RFFL-212ENST00000584655 HMCN2Q8NDA2 5059 aa5.04□□□□□ -1.6
RFFL-212ENST00000584655 R4GN34 69 aa5.04□□□□□ -1.6
RFFL-212ENST00000584655 ROMO1P60602 79 aa5.02□□□□□ -1.61
RFFL-212ENST00000584655 LORP23490 312 aaPredicted RBP5□□□□□ -1.61
RFFL-212ENST00000584655 KRTAP10-6P60371 365 aaPredicted RBP4.97□□□□□ -1.61
RFFL-212ENST00000584655 NDUFAF8A1L188 74 aa4.93□□□□□ -1.62
RFFL-212ENST00000584655 KRTAP3-2Q9BYR7 98 aa4.92□□□□□ -1.62
RFFL-212ENST00000584655 KRTAP12-2P59991 146 aa4.89□□□□□ -1.63
RFFL-212ENST00000584655 CAMK2N1Q7Z7J9 78 aa4.88□□□□□ -1.63
RFFL-212ENST00000584655 USH2AO75445 5202 aa4.86□□□□□ -1.63
RFFL-212ENST00000584655 MUC17Q685J3 4493 aa4.83□□□□□ -1.64
RFFL-212ENST00000584655 KRTAP10-10P60014 251 aa4.81□□□□□ -1.64
RFFL-212ENST00000584655 KRTAP12-1P59990 96 aa4.75□□□□□ -1.65
RFFL-212ENST00000584655 FLGP20930 4061 aaPredicted RBP4.65□□□□□ -1.67
RFFL-212ENST00000584655 MT1HP80294 61 aa4.63□□□□□ -1.67
RFFL-212ENST00000584655 KRTAP19-2Q3LHN2 52 aa4.63□□□□□ -1.67
RFFL-212ENST00000584655 LCE2CQ5TA81 110 aa4.61□□□□□ -1.67
RFFL-212ENST00000584655 LUZP6Q538Z0 58 aa4.59□□□□□ -1.67
RFFL-212ENST00000584655 KMT2DO14686 5537 aa4.58□□□□□ -1.68
RFFL-212ENST00000584655 PLAC4Q8WY50 150 aa4.57□□□□□ -1.68
RFFL-212ENST00000584655 MT1FP04733 61 aa4.56□□□□□ -1.68
RFFL-212ENST00000584655 KRTAP15-1Q3LI76 137 aa4.52□□□□□ -1.69
RFFL-212ENST00000584655 MT2AP02795 61 aa4.5□□□□□ -1.69
RFFL-212ENST00000584655 KRTAP19-1Q8IUB9 90 aa4.42□□□□□ -1.7
RFFL-212ENST00000584655 KRTAP9-8Q9BYQ0 159 aa4.4□□□□□ -1.71
RFFL-212ENST00000584655 TNP1P09430 55 aa4.4□□□□□ -1.71
RFFL-212ENST00000584655 A0A0A0MQY5 61 aa4.36□□□□□ -1.71
RFFL-212ENST00000584655 DSTQ03001 7570 aaKnown RBP4.34□□□□□ -1.71
RFFL-212ENST00000584655 OBSCNQ5VST9 7968 aa4.33□□□□□ -1.72
RFFL-212ENST00000584655 LCE2AQ5TA79 106 aaPredicted RBP4.29□□□□□ -1.72
RFFL-212ENST00000584655 KRTAP9-2Q9BYQ4 174 aa4.29□□□□□ -1.72
RFFL-212ENST00000584655 PP632Q6XCG6 107 aa4.26□□□□□ -1.73
RFFL-212ENST00000584655 LCE3AQ5TA76 89 aa4.24□□□□□ -1.73
RFFL-212ENST00000584655 SPRR2GQ9BYE4 73 aa4.24□□□□□ -1.73
RFFL-212ENST00000584655 LCE2BO14633 110 aa4.23□□□□□ -1.73
RFFL-212ENST00000584655 MT1BP07438 61 aa4.21□□□□□ -1.74
RFFL-212ENST00000584655 KRTAP9-3Q9BYQ3 159 aa4.19□□□□□ -1.74
RFFL-212ENST00000584655 KRTAP10-7P60409 375 aaPredicted RBP4.19□□□□□ -1.74
RFFL-212ENST00000584655 KRTAP4-8A0A0G2JLE6 195 aa4.18□□□□□ -1.74
RFFL-212ENST00000584655 KRTAP4-8Q9BYQ9 185 aa4.18□□□□□ -1.74
RFFL-212ENST00000584655 SSPOA2VEC9 5147 aa4.17□□□□□ -1.74
RFFL-212ENST00000584655 MUC12Q9UKN1 5478 aa4.14□□□□□ -1.75
RFFL-212ENST00000584655 MT1XP80297 61 aa4.14□□□□□ -1.75
RFFL-212ENST00000584655 CRCT1Q9UGL9 99 aa4.14□□□□□ -1.75
RFFL-212ENST00000584655 FCGBPQ9Y6R7 5405 aaPredicted RBP4.13□□□□□ -1.75
RFFL-212ENST00000584655 KRTAP10-5P60370 271 aa4.12□□□□□ -1.75
RFFL-212ENST00000584655 KRTAP9-6A0A140TA67 174 aa4.12□□□□□ -1.75
RFFL-212ENST00000584655 KRTAP10-12P60413 245 aa4.1□□□□□ -1.75
RFFL-212ENST00000584655 SYNE1Q8NF91 8797 aaKnown RBP4.09□□□□□ -1.75
RFFL-212ENST00000584655 PRO2289Q9P1D8 64 aa4.08□□□□□ -1.76
RFFL-212ENST00000584655 SYNE2Q8WXH0 6885 aaKnown RBP4.07□□□□□ -1.76
RFFL-212ENST00000584655 LCE2DQ5TA82 110 aaPredicted RBP4.06□□□□□ -1.76
RFFL-212ENST00000584655 KRTAP19-8Q3LI54 63 aa4.02□□□□□ -1.77
RFFL-212ENST00000584655 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
RFFL-212ENST00000584655 KRTAP12-3P60328 96 aa3.99□□□□□ -1.77
RFFL-212ENST00000584655 KRTAP19-5Q3LI72 72 aa3.96□□□□□ -1.78
RFFL-212ENST00000584655 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
RFFL-212ENST00000584655 KRTAP23-1A1A580 65 aa3.89□□□□□ -1.79
RFFL-212ENST00000584655 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
RFFL-212ENST00000584655 KRTAP8-1Q8IUC2 63 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms