RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 J3QR89 54 aa10.82□□□□□ -0.68
SHMT1-206ENST00000579558 LINC00208Q96KT6 92 aa10.81□□□□□ -0.68
SHMT1-206ENST00000579558 OCR1Q9BZK8 76 aa10.79□□□□□ -0.68
SHMT1-206ENST00000579558 KLKP1Q107X0 134 aa10.78□□□□□ -0.68
SHMT1-206ENST00000579558 MP68P56378 58 aa10.77□□□□□ -0.69
SHMT1-206ENST00000579558 SPRR2GQ9BYE4 73 aa10.76□□□□□ -0.69
SHMT1-206ENST00000579558 A8MUN3 132 aa10.72□□□□□ -0.69
SHMT1-206ENST00000579558 NDUFC1O43677 76 aa10.72□□□□□ -0.69
SHMT1-206ENST00000579558 Q5VV11 94 aa10.71□□□□□ -0.69
SHMT1-206ENST00000579558 MT1BP07438 61 aa10.69□□□□□ -0.7
SHMT1-206ENST00000579558 IMUPQ9GZP8 106 aa10.69□□□□□ -0.7
SHMT1-206ENST00000579558 KRTAP19-8Q3LI54 63 aa10.68□□□□□ -0.7
SHMT1-206ENST00000579558 SCGB1A1P11684 91 aa10.63□□□□□ -0.71
SHMT1-206ENST00000579558 CRIPTQ9P021 101 aa10.62□□□□□ -0.71
SHMT1-206ENST00000579558 H3BPC8 53 aa10.61□□□□□ -0.71
SHMT1-206ENST00000579558 H0YAA0 97 aa10.59□□□□□ -0.71
SHMT1-206ENST00000579558 A6NN06 94 aa10.56□□□□□ -0.72
SHMT1-206ENST00000579558 KRTAP6-3Q3LI67 103 aa10.54□□□□□ -0.72
SHMT1-206ENST00000579558 ADM2Q7Z4H4 148 aa10.5□□□□□ -0.73
SHMT1-206ENST00000579558 DMAC1Q96GE9 116 aa10.45□□□□□ -0.74
SHMT1-206ENST00000579558 MT-ATP8P03928 68 aa10.44□□□□□ -0.74
SHMT1-206ENST00000579558 K7ERU9 68 aa10.43□□□□□ -0.74
SHMT1-206ENST00000579558 KRTAP10-5P60370 271 aa10.43□□□□□ -0.74
SHMT1-206ENST00000579558 TRAV7A0A075B6U4 112 aa10.33□□□□□ -0.76
SHMT1-206ENST00000579558 SMIM20Q8N5G0 67 aa10.33□□□□□ -0.76
SHMT1-206ENST00000579558 NEBP20929 6669 aa10.32□□□□□ -0.76
SHMT1-206ENST00000579558 C20orf197Q8N268 126 aa10.27□□□□□ -0.77
SHMT1-206ENST00000579558 MUC12Q9UKN1 5478 aa10.27□□□□□ -0.77
SHMT1-206ENST00000579558 P0C880 135 aa10.26□□□□□ -0.77
SHMT1-206ENST00000579558 R4GN34 69 aa10.23□□□□□ -0.77
SHMT1-206ENST00000579558 ACYP2P14621 99 aa10.22□□□□□ -0.77
SHMT1-206ENST00000579558 KRTAP3-2Q9BYR7 98 aa10.17□□□□□ -0.78
SHMT1-206ENST00000579558 M0QZ58 72 aa10.16□□□□□ -0.78
SHMT1-206ENST00000579558 PLAC4Q8WY50 150 aa10.14□□□□□ -0.79
SHMT1-206ENST00000579558 SNURFQ9Y675 71 aa10.12□□□□□ -0.79
SHMT1-206ENST00000579558 SPTSSBQ8NFR3 76 aa10.1□□□□□ -0.79
SHMT1-206ENST00000579558 PRO2289Q9P1D8 64 aa10.08□□□□□ -0.8
SHMT1-206ENST00000579558 CHKB-CPT1BH3BT56 60 aa10.05□□□□□ -0.8
SHMT1-206ENST00000579558 MT1XP80297 61 aa10.04□□□□□ -0.8
SHMT1-206ENST00000579558 LINC01554Q52M75 96 aa10.02□□□□□ -0.81
SHMT1-206ENST00000579558 SERP2Q8N6R1 65 aa10□□□□□ -0.81
SHMT1-206ENST00000579558 SPANXA2-OT1Q8N9U9 137 aa9.96□□□□□ -0.82
SHMT1-206ENST00000579558 KMT2DO14686 5537 aa9.96□□□□□ -0.82
SHMT1-206ENST00000579558 KRTAP5-9P26371 169 aa9.95□□□□□ -0.82
SHMT1-206ENST00000579558 MDN1Q9NU22 5596 aa9.94□□□□□ -0.82
SHMT1-206ENST00000579558 KRTAP20-1Q3LI63 56 aa9.9□□□□□ -0.82
SHMT1-206ENST00000579558 KRTAP12-2P59991 146 aa9.78□□□□□ -0.84
SHMT1-206ENST00000579558 COX7CP15954 63 aa9.7□□□□□ -0.86
SHMT1-206ENST00000579558 COA5Q86WW8 74 aa9.7□□□□□ -0.86
SHMT1-206ENST00000579558 KRTAP8-1Q8IUC2 63 aa9.7□□□□□ -0.86
SHMT1-206ENST00000579558 SPRR2FQ96RM1 72 aa9.7□□□□□ -0.86
SHMT1-206ENST00000579558 KRTAP13-4Q3LI77 160 aa9.61□□□□□ -0.87
SHMT1-206ENST00000579558 KRTAP10-7P60409 375 aaPredicted RBP9.59□□□□□ -0.87
SHMT1-206ENST00000579558 KRTAP4-8A0A0G2JLE6 195 aa9.58□□□□□ -0.88
SHMT1-206ENST00000579558 KRTAP4-8Q9BYQ9 185 aa9.58□□□□□ -0.88
SHMT1-206ENST00000579558 KRTAP2-3P0C7H8 128 aa9.56□□□□□ -0.88
SHMT1-206ENST00000579558 KRTAP2-4Q9BYR9 128 aa9.56□□□□□ -0.88
SHMT1-206ENST00000579558 SPRR2EP22531 72 aa9.55□□□□□ -0.88
SHMT1-206ENST00000579558 SPRR2BP35325 72 aa9.55□□□□□ -0.88
SHMT1-206ENST00000579558 SPRR2AP35326 72 aa9.55□□□□□ -0.88
SHMT1-206ENST00000579558 H7BZZ5 65 aa9.54□□□□□ -0.88
SHMT1-206ENST00000579558 CYSTM1Q9H1C7 97 aa9.54□□□□□ -0.88
SHMT1-206ENST00000579558 KRTAP10-12P60413 245 aa9.53□□□□□ -0.88
SHMT1-206ENST00000579558 SEC61GP60059 68 aa9.52□□□□□ -0.89
SHMT1-206ENST00000579558 SERP1Q9Y6X1 66 aa9.5□□□□□ -0.89
SHMT1-206ENST00000579558 CAMK2N1Q7Z7J9 78 aa9.43□□□□□ -0.9
SHMT1-206ENST00000579558 LCE1AQ5T7P2 110 aa9.41□□□□□ -0.9
SHMT1-206ENST00000579558 ANAPC13Q9BS18 74 aa9.4□□□□□ -0.9
SHMT1-206ENST00000579558 A0A0D9SG42 100 aa9.35□□□□□ -0.91
SHMT1-206ENST00000579558 A0A1B0GU33 70 aa9.33□□□□□ -0.92
SHMT1-206ENST00000579558 SPATA8Q6RVD6 105 aa9.33□□□□□ -0.92
SHMT1-206ENST00000579558 KRTAP2-2Q9BYT5 123 aa9.24□□□□□ -0.93
SHMT1-206ENST00000579558 KRTAP2-1Q9BYU5 128 aa9.24□□□□□ -0.93
SHMT1-206ENST00000579558 SPRR2DP22532 72 aa9.23□□□□□ -0.93
SHMT1-206ENST00000579558 SPINT4Q6UDR6 99 aa9.22□□□□□ -0.93
SHMT1-206ENST00000579558 A0A1B0GU69 56 aa9.21□□□□□ -0.94
SHMT1-206ENST00000579558 CCDC179H3BU77 68 aa9.2□□□□□ -0.94
SHMT1-206ENST00000579558 KRTAP12-1P59990 96 aa9.14□□□□□ -0.95
SHMT1-206ENST00000579558 SMIM26A0A096LP01 95 aa9.08□□□□□ -0.96
SHMT1-206ENST00000579558 ATP5EP56381 51 aaPredicted RBP9.08□□□□□ -0.96
SHMT1-206ENST00000579558 A8MU10 97 aa9□□□□□ -0.97
SHMT1-206ENST00000579558 KRTAP19-7Q3SYF9 63 aa8.96□□□□□ -0.98
SHMT1-206ENST00000579558 LCE3BQ5TA77 95 aa8.96□□□□□ -0.98
SHMT1-206ENST00000579558 PRR15LQ9BU68 103 aa8.96□□□□□ -0.98
SHMT1-206ENST00000579558 MT1EP04732 61 aa8.89□□□□□ -0.99
SHMT1-206ENST00000579558 LINC01558Q9Y6Z2 57 aa8.87□□□□□ -0.99
SHMT1-206ENST00000579558 TMEM258P61165 79 aa8.86□□□□□ -0.99
SHMT1-206ENST00000579558 LCE5AQ5TCM9 118 aa8.81□□□□□ -1
SHMT1-206ENST00000579558 KRTAP19-3Q7Z4W3 81 aa8.8□□□□□ -1
SHMT1-206ENST00000579558 KRTAP19-5Q3LI72 72 aa8.78□□□□□ -1
SHMT1-206ENST00000579558 C10orf95Q9H7T3 257 aa8.74□□□□□ -1.01
SHMT1-206ENST00000579558 TNP1P09430 55 aa8.71□□□□□ -1.02
SHMT1-206ENST00000579558 UQCR11O14957 56 aa8.65□□□□□ -1.02
SHMT1-206ENST00000579558 DSTQ03001 7570 aaKnown RBP8.63□□□□□ -1.03
SHMT1-206ENST00000579558 LCE3AQ5TA76 89 aa8.63□□□□□ -1.03
SHMT1-206ENST00000579558 MT1GP13640 62 aa8.6□□□□□ -1.03
SHMT1-206ENST00000579558 GPR98Q8WXG9 6306 aa8.57□□□□□ -1.04
SHMT1-206ENST00000579558 PP632Q6XCG6 107 aa8.55□□□□□ -1.04
SHMT1-206ENST00000579558 MT1LQ93083 61 aa8.51□□□□□ -1.05
SHMT1-206ENST00000579558 MIR22HGQ0VDD5 57 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms