RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 LAMA5O15230 3695 aa4.22□□□□□ -1.73
SEC22B-201ENST00000578049 PLECQ15149 4684 aaKnown RBP4.2□□□□□ -1.74
SEC22B-201ENST00000578049 SMG1Q96Q15 3661 aaKnown RBP4.18□□□□□ -1.74
SEC22B-201ENST00000578049 ASPMQ8IZT6 3477 aa4.17□□□□□ -1.74
SEC22B-201ENST00000578049 KRTAP4-1Q9BYQ7 146 aa4.16□□□□□ -1.74
SEC22B-201ENST00000578049 MT2AP02795 61 aa4.15□□□□□ -1.74
SEC22B-201ENST00000578049 FAT1Q14517 4588 aa4.14□□□□□ -1.75
SEC22B-201ENST00000578049 MT1HP80294 61 aa4.12□□□□□ -1.75
SEC22B-201ENST00000578049 LCE3CQ5T5A8 94 aa4.09□□□□□ -1.75
SEC22B-201ENST00000578049 SPENQ96T58 3664 aaKnown RBP4.09□□□□□ -1.76
SEC22B-201ENST00000578049 DNAH9Q9NYC9 4486 aa4.08□□□□□ -1.76
SEC22B-201ENST00000578049 CSMD2Q7Z408 3487 aa4.08□□□□□ -1.76
SEC22B-201ENST00000578049 DNAH17Q9UFH2 4485 aa4.07□□□□□ -1.76
SEC22B-201ENST00000578049 SVEP1Q4LDE5 3571 aa4.06□□□□□ -1.76
SEC22B-201ENST00000578049 DNAH1Q9P2D7 4330 aa4.05□□□□□ -1.76
SEC22B-201ENST00000578049 MT1FP04733 61 aa4.02□□□□□ -1.77
SEC22B-201ENST00000578049 KRTAP19-5Q3LI72 72 aa4.02□□□□□ -1.77
SEC22B-201ENST00000578049 DMDP11532 3685 aa4.02□□□□□ -1.77
SEC22B-201ENST00000578049 SPRR5A0A1B0GTR4 108 aa4.01□□□□□ -1.77
SEC22B-201ENST00000578049 KRTAP19-8Q3LI54 63 aa4.01□□□□□ -1.77
SEC22B-201ENST00000578049 VPS13DQ5THJ4 4388 aa4□□□□□ -1.77
SEC22B-201ENST00000578049 DYNC1H1Q14204 4646 aaKnown RBP3.98□□□□□ -1.77
SEC22B-201ENST00000578049 DNAH8Q96JB1 4490 aa3.98□□□□□ -1.77
SEC22B-201ENST00000578049 DNHD1Q96M86 4753 aa3.96□□□□□ -1.78
SEC22B-201ENST00000578049 SACSQ9NZJ4 4579 aa3.96□□□□□ -1.78
SEC22B-201ENST00000578049 KRTAP10-7P60409 375 aaPredicted RBP3.93□□□□□ -1.78
SEC22B-201ENST00000578049 KRTAP19-1Q8IUB9 90 aa3.92□□□□□ -1.78
SEC22B-201ENST00000578049 RYR1P21817 5038 aa3.88□□□□□ -1.79
SEC22B-201ENST00000578049 LRP1BQ9NZR2 4599 aa3.88□□□□□ -1.79
SEC22B-201ENST00000578049 LRP1Q07954 4544 aaKnown RBP3.88□□□□□ -1.79
SEC22B-201ENST00000578049 BSNQ9UPA5 3926 aa3.85□□□□□ -1.79
SEC22B-201ENST00000578049 DYNC2H1Q8NCM8 4307 aaKnown RBP3.85□□□□□ -1.79
SEC22B-201ENST00000578049 VPS13CQ709C8 3753 aa3.85□□□□□ -1.79
SEC22B-201ENST00000578049 APOBP04114 4563 aaKnown RBP3.84□□□□□ -1.79
SEC22B-201ENST00000578049 SPRR2FQ96RM1 72 aa3.82□□□□□ -1.8
SEC22B-201ENST00000578049 FAT3Q8TDW7 4589 aa3.81□□□□□ -1.8
SEC22B-201ENST00000578049 MT1XP80297 61 aa3.8□□□□□ -1.8
SEC22B-201ENST00000578049 CSMD3Q7Z407 3707 aa3.8□□□□□ -1.8
SEC22B-201ENST00000578049 FAT2Q9NYQ8 4349 aa3.77□□□□□ -1.81
SEC22B-201ENST00000578049 MT1BP07438 61 aa3.75□□□□□ -1.81
SEC22B-201ENST00000578049 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
SEC22B-201ENST00000578049 HERC1Q15751 4861 aa3.73□□□□□ -1.81
SEC22B-201ENST00000578049 AKAP9Q99996 3911 aa3.73□□□□□ -1.81
SEC22B-201ENST00000578049 DNAH3Q8TD57 4116 aa3.73□□□□□ -1.81
SEC22B-201ENST00000578049 STARD9Q9P2P6 4700 aa3.71□□□□□ -1.81
SEC22B-201ENST00000578049 RYR2Q92736 4967 aa3.71□□□□□ -1.82
SEC22B-201ENST00000578049 MT1GP13640 62 aa3.69□□□□□ -1.82
SEC22B-201ENST00000578049 RYR3Q15413 4870 aa3.68□□□□□ -1.82
SEC22B-201ENST00000578049 HSPG2P98160 4391 aa3.68□□□□□ -1.82
SEC22B-201ENST00000578049 BIRC6Q9NR09 4857 aa3.67□□□□□ -1.82
SEC22B-201ENST00000578049 KIAA1109Q2LD37 5005 aa3.67□□□□□ -1.82
SEC22B-201ENST00000578049 KRTAP9-8Q9BYQ0 159 aa3.66□□□□□ -1.82
SEC22B-201ENST00000578049 ANK2Q01484 3957 aa3.66□□□□□ -1.82
SEC22B-201ENST00000578049 MYCBP2O75592 4640 aa3.64□□□□□ -1.83
SEC22B-201ENST00000578049 LCE3BQ5TA77 95 aa3.61□□□□□ -1.83
SEC22B-201ENST00000578049 ZNF469Q96JG9 3925 aaPredicted RBP3.6□□□□□ -1.83
SEC22B-201ENST00000578049 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
SEC22B-201ENST00000578049 LCE3EQ5T5B0 92 aa3.59□□□□□ -1.83
SEC22B-201ENST00000578049 KRTAP9-3Q9BYQ3 159 aa3.59□□□□□ -1.83
SEC22B-201ENST00000578049 LCE2CQ5TA81 110 aa3.58□□□□□ -1.84
SEC22B-201ENST00000578049 MT1LQ93083 61 aa3.56□□□□□ -1.84
SEC22B-201ENST00000578049 VPS13BQ7Z7G8 4022 aa3.55□□□□□ -1.84
SEC22B-201ENST00000578049 CMYA5Q8N3K9 4069 aa3.54□□□□□ -1.84
SEC22B-201ENST00000578049 DNAH6Q9C0G6 4158 aa3.54□□□□□ -1.84
SEC22B-201ENST00000578049 PKD1P98161 4303 aa3.53□□□□□ -1.85
SEC22B-201ENST00000578049 SPRR2EP22531 72 aa3.52□□□□□ -1.85
SEC22B-201ENST00000578049 SPRR2BP35325 72 aa3.52□□□□□ -1.85
SEC22B-201ENST00000578049 SPRR2AP35326 72 aa3.52□□□□□ -1.85
SEC22B-201ENST00000578049 KRTAP17-1Q9BYP8 105 aa3.51□□□□□ -1.85
SEC22B-201ENST00000578049 KRTAP4-8A0A0G2JLE6 195 aa3.49□□□□□ -1.85
SEC22B-201ENST00000578049 KRTAP4-8Q9BYQ9 185 aa3.49□□□□□ -1.85
SEC22B-201ENST00000578049 KRTAP19-3Q7Z4W3 81 aa3.49□□□□□ -1.85
SEC22B-201ENST00000578049 LCE2BO14633 110 aa3.49□□□□□ -1.85
SEC22B-201ENST00000578049 HERC2O95714 4834 aa3.48□□□□□ -1.85
SEC22B-201ENST00000578049 PRKDCP78527 4128 aaKnown RBP3.48□□□□□ -1.85
SEC22B-201ENST00000578049 DNAH7Q8WXX0 4024 aa3.45□□□□□ -1.86
SEC22B-201ENST00000578049 MT1EP04732 61 aa3.45□□□□□ -1.86
SEC22B-201ENST00000578049 KRTAP19-2Q3LHN2 52 aa3.44□□□□□ -1.86
SEC22B-201ENST00000578049 KMT2CQ8NEZ4 4911 aaKnown RBP3.42□□□□□ -1.86
SEC22B-201ENST00000578049 SPRR2DP22532 72 aa3.42□□□□□ -1.86
SEC22B-201ENST00000578049 PCLOQ9Y6V0 5065 aa3.41□□□□□ -1.86
SEC22B-201ENST00000578049 FRAS1Q86XX4 4008 aa3.4□□□□□ -1.87
SEC22B-201ENST00000578049 MUC17Q685J3 4493 aa3.4□□□□□ -1.87
SEC22B-201ENST00000578049 KMT2AQ03164 3969 aa3.38□□□□□ -1.87
SEC22B-201ENST00000578049 SYNE1Q8NF91 8797 aaKnown RBP3.38□□□□□ -1.87
SEC22B-201ENST00000578049 EPPK1P58107 5090 aaKnown RBP3.38□□□□□ -1.87
SEC22B-201ENST00000578049 LRP2P98164 4655 aa3.37□□□□□ -1.87
SEC22B-201ENST00000578049 LYSTQ99698 3801 aa3.37□□□□□ -1.87
SEC22B-201ENST00000578049 HECTD4Q9Y4D8 3996 aa3.33□□□□□ -1.88
SEC22B-201ENST00000578049 MT3P25713 68 aa3.33□□□□□ -1.88
SEC22B-201ENST00000578049 MT1MQ8N339 61 aa3.33□□□□□ -1.88
SEC22B-201ENST00000578049 HYDINQ4G0P3 5121 aa3.31□□□□□ -1.88
SEC22B-201ENST00000578049 KRTAP4-7Q9BYR0 210 aa3.3□□□□□ -1.88
SEC22B-201ENST00000578049 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
SEC22B-201ENST00000578049 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
SEC22B-201ENST00000578049 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
SEC22B-201ENST00000578049 ABCA13Q86UQ4 5058 aa3.26□□□□□ -1.89
SEC22B-201ENST00000578049 KRTAP19-6Q3LI70 58 aa3.26□□□□□ -1.89
SEC22B-201ENST00000578049 FLGP20930 4061 aaPredicted RBP3.26□□□□□ -1.89
SEC22B-201ENST00000578049 PRM1P04553 51 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms