RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 MUC17Q685J3 4493 aa14.44□□□□□ -0.1
CTDNEP1-210ENST00000574322 RNF213Q63HN8 5207 aa14.33□□□□□ -0.12
CTDNEP1-210ENST00000574322 RBM12B-AS1Q9P1G2 102 aa14.31□□□□□ -0.12
CTDNEP1-210ENST00000574322 H1FX-AS1Q4G0G2 97 aa14.29□□□□□ -0.12
CTDNEP1-210ENST00000574322 A0A1B0GU69 56 aa14.27□□□□□ -0.12
CTDNEP1-210ENST00000574322 MUC2Q02817 5179 aa14.24□□□□□ -0.13
CTDNEP1-210ENST00000574322 KRTAP3-3Q9BYR6 98 aa14.22□□□□□ -0.13
CTDNEP1-210ENST00000574322 KRTAP4-1Q9BYQ7 146 aa14.21□□□□□ -0.13
CTDNEP1-210ENST00000574322 S4R3F8 94 aa14.21□□□□□ -0.13
CTDNEP1-210ENST00000574322 LCA10Q71F78 164 aa14.21□□□□□ -0.14
CTDNEP1-210ENST00000574322 BRK1Q8WUW1 75 aa14.13□□□□□ -0.15
CTDNEP1-210ENST00000574322 SEC61GP60059 68 aa14.11□□□□□ -0.15
CTDNEP1-210ENST00000574322 A6NED7 52 aa14.09□□□□□ -0.15
CTDNEP1-210ENST00000574322 PRO0628Q9UI54 55 aa14.02□□□□□ -0.16
CTDNEP1-210ENST00000574322 KRTAP19-2Q3LHN2 52 aa13.95□□□□□ -0.18
CTDNEP1-210ENST00000574322 CDC42SE1Q9NRR8 79 aa13.95□□□□□ -0.18
CTDNEP1-210ENST00000574322 UQCR11O14957 56 aa13.92□□□□□ -0.18
CTDNEP1-210ENST00000574322 CSAG1Q6PB30 78 aa13.88□□□□□ -0.19
CTDNEP1-210ENST00000574322 A8MU10 97 aa13.86□□□□□ -0.19
CTDNEP1-210ENST00000574322 SPATA8Q6RVD6 105 aa13.84□□□□□ -0.19
CTDNEP1-210ENST00000574322 KRTAP10-6P60371 365 aaPredicted RBP13.79□□□□□ -0.2
CTDNEP1-210ENST00000574322 KRTAP3-2Q9BYR7 98 aa13.79□□□□□ -0.2
CTDNEP1-210ENST00000574322 A0A1B0GU33 70 aa13.78□□□□□ -0.2
CTDNEP1-210ENST00000574322 MIR22HGQ0VDD5 57 aa13.77□□□□□ -0.21
CTDNEP1-210ENST00000574322 FAT4Q6V0I7 4981 aa13.77□□□□□ -0.21
CTDNEP1-210ENST00000574322 H0YAA0 97 aa13.68□□□□□ -0.22
CTDNEP1-210ENST00000574322 LCE2CQ5TA81 110 aa13.64□□□□□ -0.23
CTDNEP1-210ENST00000574322 ADM2Q7Z4H4 148 aa13.61□□□□□ -0.23
CTDNEP1-210ENST00000574322 P0C880 135 aa13.59□□□□□ -0.23
CTDNEP1-210ENST00000574322 FLGP20930 4061 aaPredicted RBP13.56□□□□□ -0.24
CTDNEP1-210ENST00000574322 SVIPQ8NHG7 77 aa13.53□□□□□ -0.24
CTDNEP1-210ENST00000574322 LCE2AQ5TA79 106 aaPredicted RBP13.45□□□□□ -0.26
CTDNEP1-210ENST00000574322 MT1HP80294 61 aa13.44□□□□□ -0.26
CTDNEP1-210ENST00000574322 KRTAP13-4Q3LI77 160 aa13.41□□□□□ -0.26
CTDNEP1-210ENST00000574322 PMAIP1Q13794 54 aa13.39□□□□□ -0.27
CTDNEP1-210ENST00000574322 A6NN06 94 aa13.33□□□□□ -0.27
CTDNEP1-210ENST00000574322 M0QZ58 72 aa13.32□□□□□ -0.28
CTDNEP1-210ENST00000574322 M0R2T5 61 aa13.31□□□□□ -0.28
CTDNEP1-210ENST00000574322 A0A0D9SG42 100 aa13.11□□□□□ -0.31
CTDNEP1-210ENST00000574322 R4GN34 69 aa13.1□□□□□ -0.31
CTDNEP1-210ENST00000574322 LORP23490 312 aaPredicted RBP13.09□□□□□ -0.31
CTDNEP1-210ENST00000574322 K7ERS5 55 aa13.08□□□□□ -0.32
CTDNEP1-210ENST00000574322 CRIPTQ9P021 101 aa12.98□□□□□ -0.33
CTDNEP1-210ENST00000574322 KRTAP12-1P59990 96 aa12.93□□□□□ -0.34
CTDNEP1-210ENST00000574322 KTN1-AS1Q86SY8 53 aa12.93□□□□□ -0.34
CTDNEP1-210ENST00000574322 KRTAP12-2P59991 146 aa12.89□□□□□ -0.35
CTDNEP1-210ENST00000574322 KRTAP9-8Q9BYQ0 159 aa12.82□□□□□ -0.36
CTDNEP1-210ENST00000574322 LINC01554Q52M75 96 aa12.81□□□□□ -0.36
CTDNEP1-210ENST00000574322 SPINT4Q6UDR6 99 aa12.79□□□□□ -0.36
CTDNEP1-210ENST00000574322 MT2AP02795 61 aa12.73□□□□□ -0.37
CTDNEP1-210ENST00000574322 MT1FP04733 61 aa12.64□□□□□ -0.39
CTDNEP1-210ENST00000574322 SPRR2GQ9BYE4 73 aa12.64□□□□□ -0.39
CTDNEP1-210ENST00000574322 KRTAP10-10P60014 251 aa12.63□□□□□ -0.39
CTDNEP1-210ENST00000574322 ROMO1P60602 79 aa12.61□□□□□ -0.39
CTDNEP1-210ENST00000574322 KRTAP19-1Q8IUB9 90 aa12.56□□□□□ -0.4
CTDNEP1-210ENST00000574322 LCE2DQ5TA82 110 aaPredicted RBP12.5□□□□□ -0.41
CTDNEP1-210ENST00000574322 PRAC1Q96KF2 57 aa12.48□□□□□ -0.41
CTDNEP1-210ENST00000574322 KRTAP9-2Q9BYQ4 174 aa12.45□□□□□ -0.42
CTDNEP1-210ENST00000574322 KRTAP9-3Q9BYQ3 159 aa12.4□□□□□ -0.43
CTDNEP1-210ENST00000574322 KRTAP19-8Q3LI54 63 aa12.28□□□□□ -0.44
CTDNEP1-210ENST00000574322 CAMK2N1Q7Z7J9 78 aa12.28□□□□□ -0.44
CTDNEP1-210ENST00000574322 C10orf95Q9H7T3 257 aa12.23□□□□□ -0.45
CTDNEP1-210ENST00000574322 PLAC4Q8WY50 150 aa12.21□□□□□ -0.45
CTDNEP1-210ENST00000574322 KRTAP25-1Q3LHN0 102 aa12.2□□□□□ -0.46
CTDNEP1-210ENST00000574322 LCE2BO14633 110 aa12.17□□□□□ -0.46
CTDNEP1-210ENST00000574322 FSIP2Q5CZC0 6907 aa12.1□□□□□ -0.47
CTDNEP1-210ENST00000574322 USH2AO75445 5202 aa12.08□□□□□ -0.48
CTDNEP1-210ENST00000574322 MT1BP07438 61 aa12.06□□□□□ -0.48
CTDNEP1-210ENST00000574322 CRCT1Q9UGL9 99 aa11.89□□□□□ -0.51
CTDNEP1-210ENST00000574322 SSPOA2VEC9 5147 aa11.82□□□□□ -0.52
CTDNEP1-210ENST00000574322 KRTAP9-6A0A140TA67 174 aa11.77□□□□□ -0.52
CTDNEP1-210ENST00000574322 TNP1P09430 55 aa11.77□□□□□ -0.52
CTDNEP1-210ENST00000574322 MT1XP80297 61 aa11.72□□□□□ -0.53
CTDNEP1-210ENST00000574322 KRTAP10-5P60370 271 aa11.71□□□□□ -0.54
CTDNEP1-210ENST00000574322 PP632Q6XCG6 107 aa11.63□□□□□ -0.55
CTDNEP1-210ENST00000574322 KRTAP23-1A1A580 65 aa11.61□□□□□ -0.55
CTDNEP1-210ENST00000574322 KRTAP19-6Q3LI70 58 aa11.61□□□□□ -0.55
CTDNEP1-210ENST00000574322 PRO2289Q9P1D8 64 aa11.54□□□□□ -0.56
CTDNEP1-210ENST00000574322 FCGBPQ9Y6R7 5405 aaPredicted RBP11.43□□□□□ -0.58
CTDNEP1-210ENST00000574322 KRTAP10-7P60409 375 aaPredicted RBP11.23□□□□□ -0.61
CTDNEP1-210ENST00000574322 LCE3AQ5TA76 89 aa11.22□□□□□ -0.61
CTDNEP1-210ENST00000574322 KRTAP10-12P60413 245 aa11.18□□□□□ -0.62
CTDNEP1-210ENST00000574322 KRTAP8-1Q8IUC2 63 aa11.08□□□□□ -0.64
CTDNEP1-210ENST00000574322 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.03□□□□□ -0.64
CTDNEP1-210ENST00000574322 MACF1Q9UPN3 7388 aaKnown RBP10.99□□□□□ -0.65
CTDNEP1-210ENST00000574322 KRTAP15-1Q3LI76 137 aa10.88□□□□□ -0.67
CTDNEP1-210ENST00000574322 SYNE2Q8WXH0 6885 aaKnown RBP10.79□□□□□ -0.68
CTDNEP1-210ENST00000574322 KRTAP12-3P60328 96 aa10.78□□□□□ -0.68
CTDNEP1-210ENST00000574322 KRTAP4-8A0A0G2JLE6 195 aa10.72□□□□□ -0.69
CTDNEP1-210ENST00000574322 KRTAP4-8Q9BYQ9 185 aa10.72□□□□□ -0.69
CTDNEP1-210ENST00000574322 KRTAP9-7A8MTY7 169 aa10.68□□□□□ -0.7
CTDNEP1-210ENST00000574322 KMT2DO14686 5537 aa10.64□□□□□ -0.71
CTDNEP1-210ENST00000574322 KRTAP19-5Q3LI72 72 aa10.63□□□□□ -0.71
CTDNEP1-210ENST00000574322 KRTAP6-3Q3LI67 103 aa10.55□□□□□ -0.72
CTDNEP1-210ENST00000574322 KRTAP19-7Q3SYF9 63 aa10.47□□□□□ -0.73
CTDNEP1-210ENST00000574322 SPRR5A0A1B0GTR4 108 aa10.46□□□□□ -0.74
CTDNEP1-210ENST00000574322 KRTAP5-9P26371 169 aa10.36□□□□□ -0.75
CTDNEP1-210ENST00000574322 SPRR2FQ96RM1 72 aa10.28□□□□□ -0.76
CTDNEP1-210ENST00000574322 MT1EP04732 61 aa10.25□□□□□ -0.77
CTDNEP1-210ENST00000574322 MUC12Q9UKN1 5478 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms