RNA–Protein interactions for RNA: ENST00000574205.5

CTDNEP1-209, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 1,506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-209ENST00000574205 DMAC1Q96GE9 116 aa15.52■□□□□ 0.07
CTDNEP1-209ENST00000574205 SNURFQ9Y675 71 aa15.51■□□□□ 0.07
CTDNEP1-209ENST00000574205 KRTAP9-3Q9BYQ3 159 aa15.49■□□□□ 0.07
CTDNEP1-209ENST00000574205 C20orf197Q8N268 126 aa15.48■□□□□ 0.07
CTDNEP1-209ENST00000574205 NDUFC1O43677 76 aa15.47■□□□□ 0.07
CTDNEP1-209ENST00000574205 FSIP2Q5CZC0 6907 aa15.36■□□□□ 0.05
CTDNEP1-209ENST00000574205 COX7CP15954 63 aa15.33■□□□□ 0.05
CTDNEP1-209ENST00000574205 ACYP2P14621 99 aa15.27■□□□□ 0.03
CTDNEP1-209ENST00000574205 LCE2BO14633 110 aa15.26■□□□□ 0.03
CTDNEP1-209ENST00000574205 SPANXA2-OT1Q8N9U9 137 aa15.24■□□□□ 0.03
CTDNEP1-209ENST00000574205 CRCT1Q9UGL9 99 aa15.23■□□□□ 0.03
CTDNEP1-209ENST00000574205 KRTAP9-6A0A140TA67 174 aa15.22■□□□□ 0.03
CTDNEP1-209ENST00000574205 H0YAA0 97 aa15.18■□□□□ 0.02
CTDNEP1-209ENST00000574205 ANAPC13Q9BS18 74 aa15.15■□□□□ 0.02
CTDNEP1-209ENST00000574205 USH2AO75445 5202 aa15.12■□□□□ 0.01
CTDNEP1-209ENST00000574205 KRTAP19-1Q8IUB9 90 aa15.01□□□□□ -0.01
CTDNEP1-209ENST00000574205 ADM2Q7Z4H4 148 aa15□□□□□ -0.01
CTDNEP1-209ENST00000574205 CHKB-CPT1BH3BT56 60 aa14.98□□□□□ -0.01
CTDNEP1-209ENST00000574205 CYSTM1Q9H1C7 97 aa14.97□□□□□ -0.01
CTDNEP1-209ENST00000574205 H7BZZ5 65 aa14.96□□□□□ -0.02
CTDNEP1-209ENST00000574205 SPTSSBQ8NFR3 76 aa14.96□□□□□ -0.02
CTDNEP1-209ENST00000574205 CRIPTQ9P021 101 aa14.96□□□□□ -0.02
CTDNEP1-209ENST00000574205 SPRR2GQ9BYE4 73 aa14.94□□□□□ -0.02
CTDNEP1-209ENST00000574205 SSPOA2VEC9 5147 aa14.85□□□□□ -0.03
CTDNEP1-209ENST00000574205 CCDC179H3BU77 68 aa14.8□□□□□ -0.04
CTDNEP1-209ENST00000574205 COA5Q86WW8 74 aa14.75□□□□□ -0.05
CTDNEP1-209ENST00000574205 P0C880 135 aa14.74□□□□□ -0.05
CTDNEP1-209ENST00000574205 KRTAP19-8Q3LI54 63 aa14.72□□□□□ -0.05
CTDNEP1-209ENST00000574205 KRTAP3-2Q9BYR7 98 aa14.72□□□□□ -0.05
CTDNEP1-209ENST00000574205 Q5VV11 94 aa14.68□□□□□ -0.06
CTDNEP1-209ENST00000574205 KRTAP19-6Q3LI70 58 aa14.63□□□□□ -0.07
CTDNEP1-209ENST00000574205 MT1BP07438 61 aa14.62□□□□□ -0.07
CTDNEP1-209ENST00000574205 R4GN34 69 aa14.6□□□□□ -0.07
CTDNEP1-209ENST00000574205 M0QZ58 72 aa14.48□□□□□ -0.09
CTDNEP1-209ENST00000574205 ATP5EP56381 51 aaPredicted RBP14.46□□□□□ -0.1
CTDNEP1-209ENST00000574205 FCGBPQ9Y6R7 5405 aaPredicted RBP14.43□□□□□ -0.1
CTDNEP1-209ENST00000574205 TMEM258P61165 79 aa14.32□□□□□ -0.12
CTDNEP1-209ENST00000574205 SEC61GP60059 68 aa14.27□□□□□ -0.12
CTDNEP1-209ENST00000574205 LINC01554Q52M75 96 aa14.23□□□□□ -0.13
CTDNEP1-209ENST00000574205 A6NN06 94 aa14.22□□□□□ -0.13
CTDNEP1-209ENST00000574205 SERP1Q9Y6X1 66 aa14.21□□□□□ -0.13
CTDNEP1-209ENST00000574205 PLAC4Q8WY50 150 aa14.18□□□□□ -0.14
CTDNEP1-209ENST00000574205 KRTAP10-5P60370 271 aa14.15□□□□□ -0.14
CTDNEP1-209ENST00000574205 KRTAP9-1A8MXZ3 250 aaPredicted RBP14.15□□□□□ -0.14
CTDNEP1-209ENST00000574205 KRTAP13-4Q3LI77 160 aa14.04□□□□□ -0.16
CTDNEP1-209ENST00000574205 A0A1B0GU69 56 aa14□□□□□ -0.17
CTDNEP1-209ENST00000574205 A0A1B0GU33 70 aa13.95□□□□□ -0.18
CTDNEP1-209ENST00000574205 PRO2289Q9P1D8 64 aa13.93□□□□□ -0.18
CTDNEP1-209ENST00000574205 MACF1Q9UPN3 7388 aaKnown RBP13.9□□□□□ -0.18
CTDNEP1-209ENST00000574205 MT1XP80297 61 aa13.88□□□□□ -0.19
CTDNEP1-209ENST00000574205 SPATA8Q6RVD6 105 aa13.8□□□□□ -0.2
CTDNEP1-209ENST00000574205 LINC01558Q9Y6Z2 57 aa13.8□□□□□ -0.2
CTDNEP1-209ENST00000574205 PRR15LQ9BU68 103 aa13.79□□□□□ -0.2
CTDNEP1-209ENST00000574205 PCP4P48539 62 aa13.78□□□□□ -0.2
CTDNEP1-209ENST00000574205 KRTAP9-7A8MTY7 169 aa13.77□□□□□ -0.21
CTDNEP1-209ENST00000574205 A0A0D9SG42 100 aa13.68□□□□□ -0.22
CTDNEP1-209ENST00000574205 SYNE2Q8WXH0 6885 aaKnown RBP13.63□□□□□ -0.23
CTDNEP1-209ENST00000574205 SMIM26A0A096LP01 95 aa13.55□□□□□ -0.24
CTDNEP1-209ENST00000574205 CAMK2N1Q7Z7J9 78 aa13.51□□□□□ -0.25
CTDNEP1-209ENST00000574205 KRTAP6-3Q3LI67 103 aa13.45□□□□□ -0.26
CTDNEP1-209ENST00000574205 SPINT4Q6UDR6 99 aa13.45□□□□□ -0.26
CTDNEP1-209ENST00000574205 KRTAP12-1P59990 96 aa13.44□□□□□ -0.26
CTDNEP1-209ENST00000574205 KRTAP12-2P59991 146 aa13.44□□□□□ -0.26
CTDNEP1-209ENST00000574205 V9GYY9 64 aa13.43□□□□□ -0.26
CTDNEP1-209ENST00000574205 A8MU10 97 aa13.41□□□□□ -0.26
CTDNEP1-209ENST00000574205 Q1T7F1 81 aa13.36□□□□□ -0.27
CTDNEP1-209ENST00000574205 UQCR11O14957 56 aa13.35□□□□□ -0.27
CTDNEP1-209ENST00000574205 RPS28P62857 69 aaKnown RBP13.28□□□□□ -0.28
CTDNEP1-209ENST00000574205 KRTAP10-7P60409 375 aaPredicted RBP13.26□□□□□ -0.29
CTDNEP1-209ENST00000574205 PSPHP1O15172 72 aa13.21□□□□□ -0.29
CTDNEP1-209ENST00000574205 KRTAP10-12P60413 245 aa13.2□□□□□ -0.3
CTDNEP1-209ENST00000574205 KMT2DO14686 5537 aa13.19□□□□□ -0.3
CTDNEP1-209ENST00000574205 KRTAP5-9P26371 169 aa13.14□□□□□ -0.31
CTDNEP1-209ENST00000574205 MIR22HGQ0VDD5 57 aa13.08□□□□□ -0.31
CTDNEP1-209ENST00000574205 KRTAP8-1Q8IUC2 63 aa13.07□□□□□ -0.32
CTDNEP1-209ENST00000574205 KRTAP4-8A0A0G2JLE6 195 aa13.05□□□□□ -0.32
CTDNEP1-209ENST00000574205 KRTAP4-8Q9BYQ9 185 aa13.05□□□□□ -0.32
CTDNEP1-209ENST00000574205 SPRR2FQ96RM1 72 aa12.89□□□□□ -0.35
CTDNEP1-209ENST00000574205 MUC12Q9UKN1 5478 aa12.87□□□□□ -0.35
CTDNEP1-209ENST00000574205 A6NED7 52 aa12.82□□□□□ -0.36
CTDNEP1-209ENST00000574205 C10orf95Q9H7T3 257 aa12.78□□□□□ -0.36
CTDNEP1-209ENST00000574205 SVIPQ8NHG7 77 aa12.74□□□□□ -0.37
CTDNEP1-209ENST00000574205 K7ERS5 55 aa12.73□□□□□ -0.37
CTDNEP1-209ENST00000574205 TNP1P09430 55 aa12.64□□□□□ -0.39
CTDNEP1-209ENST00000574205 NEBP20929 6669 aa12.64□□□□□ -0.39
CTDNEP1-209ENST00000574205 MDN1Q9NU22 5596 aa12.62□□□□□ -0.39
CTDNEP1-209ENST00000574205 SPRR2EP22531 72 aa12.53□□□□□ -0.4
CTDNEP1-209ENST00000574205 SPRR2BP35325 72 aa12.53□□□□□ -0.4
CTDNEP1-209ENST00000574205 SPRR2AP35326 72 aa12.53□□□□□ -0.4
CTDNEP1-209ENST00000574205 LCE1AQ5T7P2 110 aa12.47□□□□□ -0.41
CTDNEP1-209ENST00000574205 KRTAP19-7Q3SYF9 63 aa12.4□□□□□ -0.42
CTDNEP1-209ENST00000574205 CDC42SE1Q9NRR8 79 aa12.39□□□□□ -0.43
CTDNEP1-209ENST00000574205 LCE3AQ5TA76 89 aa12.32□□□□□ -0.44
CTDNEP1-209ENST00000574205 KRTAP25-1Q3LHN0 102 aa12.27□□□□□ -0.45
CTDNEP1-209ENST00000574205 MT1EP04732 61 aa12.26□□□□□ -0.45
CTDNEP1-209ENST00000574205 KRTAP19-5Q3LI72 72 aa12.26□□□□□ -0.45
CTDNEP1-209ENST00000574205 KRTAP20-1Q3LI63 56 aa12.13□□□□□ -0.47
CTDNEP1-209ENST00000574205 SPRR2DP22532 72 aa12.11□□□□□ -0.47
CTDNEP1-209ENST00000574205 KRTAP19-3Q7Z4W3 81 aa12.04□□□□□ -0.48
CTDNEP1-209ENST00000574205 KRTAP2-3P0C7H8 128 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms