RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 ZANQ9Y493 2812 aa0.77□□□□□ -2.29
TOPBP1-210ENST00000572787 SYNE1Q8NF91 8797 aaKnown RBP0.77□□□□□ -2.29
TOPBP1-210ENST00000572787 HECTD4Q9Y4D8 3996 aa0.76□□□□□ -2.29
TOPBP1-210ENST00000572787 SPRR2EP22531 72 aa0.76□□□□□ -2.29
TOPBP1-210ENST00000572787 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
TOPBP1-210ENST00000572787 TENM3Q9P273 2699 aa0.75□□□□□ -2.29
TOPBP1-210ENST00000572787 NBPF19A0A087WUL8 3843 aa0.75□□□□□ -2.29
TOPBP1-210ENST00000572787 AHNAK2Q8IVF2 5795 aa0.75□□□□□ -2.29
TOPBP1-210ENST00000572787 DNAH8Q96JB1 4490 aa0.74□□□□□ -2.29
TOPBP1-210ENST00000572787 TLN2Q9Y4G6 2542 aa0.74□□□□□ -2.29
TOPBP1-210ENST00000572787 TEP1Q99973 2627 aaKnown RBP0.74□□□□□ -2.29
TOPBP1-210ENST00000572787 KALRNO60229 2985 aa0.73□□□□□ -2.29
TOPBP1-210ENST00000572787 DNAH7Q8WXX0 4024 aa0.73□□□□□ -2.29
TOPBP1-210ENST00000572787 FASNP49327 2511 aaKnown RBP0.73□□□□□ -2.29
TOPBP1-210ENST00000572787 TGP01266 2768 aa0.73□□□□□ -2.29
TOPBP1-210ENST00000572787 CEP250Q9BV73 2442 aa0.73□□□□□ -2.29
TOPBP1-210ENST00000572787 ZFHX4Q86UP3 3567 aa0.72□□□□□ -2.29
TOPBP1-210ENST00000572787 FLGP20930 4061 aaPredicted RBP0.72□□□□□ -2.29
TOPBP1-210ENST00000572787 SPENQ96T58 3664 aaKnown RBP0.71□□□□□ -2.3
TOPBP1-210ENST00000572787 MYO18BQ8IUG5 2567 aa0.71□□□□□ -2.3
TOPBP1-210ENST00000572787 DNAH9Q9NYC9 4486 aa0.7□□□□□ -2.3
TOPBP1-210ENST00000572787 DEFB133Q30KQ1 61 aa0.7□□□□□ -2.3
TOPBP1-210ENST00000572787 DNAH6Q9C0G6 4158 aa0.69□□□□□ -2.3
TOPBP1-210ENST00000572787 TRIOO75962 3097 aa0.69□□□□□ -2.3
TOPBP1-210ENST00000572787 IGSF10Q6WRI0 2623 aa0.68□□□□□ -2.3
TOPBP1-210ENST00000572787 ITPR1Q14643 2758 aa0.68□□□□□ -2.3
TOPBP1-210ENST00000572787 USP9XQ93008 2570 aaPredicted RBP0.68□□□□□ -2.3
TOPBP1-210ENST00000572787 LAMA5O15230 3695 aa0.67□□□□□ -2.3
TOPBP1-210ENST00000572787 MXRA5Q9NR99 2828 aa0.67□□□□□ -2.3
TOPBP1-210ENST00000572787 CFAP54Q96N23 3096 aa0.67□□□□□ -2.3
TOPBP1-210ENST00000572787 PKHD1P08F94 4074 aa0.66□□□□□ -2.3
TOPBP1-210ENST00000572787 APOBP04114 4563 aaKnown RBP0.66□□□□□ -2.3
TOPBP1-210ENST00000572787 RPS29P62273 56 aaKnown RBP0.66□□□□□ -2.3
TOPBP1-210ENST00000572787 COL6A3P12111 3177 aa0.66□□□□□ -2.3
TOPBP1-210ENST00000572787 WDR87Q6ZQQ6 2873 aa0.65□□□□□ -2.31
TOPBP1-210ENST00000572787 MGAM2Q2M2H8 2515 aa0.65□□□□□ -2.31
TOPBP1-210ENST00000572787 DMXL2Q8TDJ6 3036 aa0.64□□□□□ -2.31
TOPBP1-210ENST00000572787 LAMA1P25391 3075 aa0.64□□□□□ -2.31
TOPBP1-210ENST00000572787 HTTP42858 3142 aa0.64□□□□□ -2.31
TOPBP1-210ENST00000572787 MAST4O15021 2626 aa0.64□□□□□ -2.31
TOPBP1-210ENST00000572787 NIPBLQ6KC79 2804 aaeCLIP0.63□□□□□ -2.31
TOPBP1-210ENST00000572787 DNAH1Q9P2D7 4330 aa0.62□□□□□ -2.31
TOPBP1-210ENST00000572787 AKAP9Q99996 3911 aa0.62□□□□□ -2.31
TOPBP1-210ENST00000572787 LAMA3Q16787 3333 aa0.61□□□□□ -2.31
TOPBP1-210ENST00000572787 LRP1BQ9NZR2 4599 aa0.61□□□□□ -2.31
TOPBP1-210ENST00000572787 FAT3Q8TDW7 4589 aa0.61□□□□□ -2.31
TOPBP1-210ENST00000572787 FLNAP21333 2647 aaKnown RBP0.6□□□□□ -2.31
TOPBP1-210ENST00000572787 RELNP78509 3460 aa0.59□□□□□ -2.31
TOPBP1-210ENST00000572787 AHNAKQ09666 5890 aaKnown RBP0.59□□□□□ -2.31
TOPBP1-210ENST00000572787 CSMD1Q96PZ7 3565 aa0.59□□□□□ -2.31
TOPBP1-210ENST00000572787 KRTAP5-10Q6L8G5 202 aa0.59□□□□□ -2.31
TOPBP1-210ENST00000572787 SVEP1Q4LDE5 3571 aa0.58□□□□□ -2.32
TOPBP1-210ENST00000572787 DNAH10Q8IVF4 4471 aa0.58□□□□□ -2.32
TOPBP1-210ENST00000572787 LINC01556Q5JQF7 62 aa0.57□□□□□ -2.32
TOPBP1-210ENST00000572787 FRYLO94915 3013 aa0.57□□□□□ -2.32
TOPBP1-210ENST00000572787 SPTBN5Q9NRC6 3674 aaKnown RBP0.57□□□□□ -2.32
TOPBP1-210ENST00000572787 STATHP02808 62 aa0.56□□□□□ -2.32
TOPBP1-210ENST00000572787 Q9Y3F1 56 aa0.56□□□□□ -2.32
TOPBP1-210ENST00000572787 ATMQ13315 3056 aa0.56□□□□□ -2.32
TOPBP1-210ENST00000572787 LRBAP50851 2863 aa0.56□□□□□ -2.32
TOPBP1-210ENST00000572787 ADGRG4Q8IZF6 3080 aa0.55□□□□□ -2.32
TOPBP1-210ENST00000572787 TEX15Q9BXT5 2789 aa0.55□□□□□ -2.32
TOPBP1-210ENST00000572787 MAP1AP78559 2803 aaPredicted RBP0.55□□□□□ -2.32
TOPBP1-210ENST00000572787 HMCN2Q8NDA2 5059 aa0.55□□□□□ -2.32
TOPBP1-210ENST00000572787 CMYA5Q8N3K9 4069 aa0.54□□□□□ -2.32
TOPBP1-210ENST00000572787 CD52P31358 61 aa0.54□□□□□ -2.32
TOPBP1-210ENST00000572787 NBEAL1Q6ZS30 2694 aa0.54□□□□□ -2.32
TOPBP1-210ENST00000572787 FAT1Q14517 4588 aa0.54□□□□□ -2.32
TOPBP1-210ENST00000572787 SPTAN1Q13813 2472 aaKnown RBP0.53□□□□□ -2.32
TOPBP1-210ENST00000572787 A0A096LPF7 62 aa0.53□□□□□ -2.32
TOPBP1-210ENST00000572787 MT1HP80294 61 aa0.53□□□□□ -2.32
TOPBP1-210ENST00000572787 MUC16Q8WXI7 14507 aa0.53□□□□□ -2.33
TOPBP1-210ENST00000572787 FAT4Q6V0I7 4981 aa0.52□□□□□ -2.33
TOPBP1-210ENST00000572787 MT1EP04732 61 aa0.52□□□□□ -2.33
TOPBP1-210ENST00000572787 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
TOPBP1-210ENST00000572787 DEFB108BQ8NET1 73 aa0.51□□□□□ -2.33
TOPBP1-210ENST00000572787 PLECQ15149 4684 aaKnown RBP0.51□□□□□ -2.33
TOPBP1-210ENST00000572787 PRUNE2Q8WUY3 3088 aa0.5□□□□□ -2.33
TOPBP1-210ENST00000572787 CFAP46Q8IYW2 2715 aa0.5□□□□□ -2.33
TOPBP1-210ENST00000572787 DOPEY1Q5JWR5 2465 aa0.49□□□□□ -2.33
TOPBP1-210ENST00000572787 ITPR2Q14571 2701 aa0.49□□□□□ -2.33
TOPBP1-210ENST00000572787 DNAH12Q6ZR08 3092 aa0.48□□□□□ -2.33
TOPBP1-210ENST00000572787 STAB2Q8WWQ8 2551 aa0.47□□□□□ -2.33
TOPBP1-210ENST00000572787 MT1LQ93083 61 aa0.46□□□□□ -2.34
TOPBP1-210ENST00000572787 COX14Q96I36 57 aa0.46□□□□□ -2.34
TOPBP1-210ENST00000572787 MUC5BQ9HC84 5762 aaPredicted RBP0.45□□□□□ -2.34
TOPBP1-210ENST00000572787 LRP2P98164 4655 aa0.45□□□□□ -2.34
TOPBP1-210ENST00000572787 C5orf42Q9H799 3197 aa0.44□□□□□ -2.34
TOPBP1-210ENST00000572787 HERC1Q15751 4861 aa0.43□□□□□ -2.34
TOPBP1-210ENST00000572787 MUC5ACP98088 5654 aa0.43□□□□□ -2.34
TOPBP1-210ENST00000572787 DEFB4AO15263 64 aa0.41□□□□□ -2.34
TOPBP1-210ENST00000572787 SMG1Q96Q15 3661 aaKnown RBP0.41□□□□□ -2.34
TOPBP1-210ENST00000572787 DNAH17Q9UFH2 4485 aa0.4□□□□□ -2.35
TOPBP1-210ENST00000572787 CEP295Q9C0D2 2601 aa0.4□□□□□ -2.35
TOPBP1-210ENST00000572787 MDN1Q9NU22 5596 aa0.4□□□□□ -2.35
TOPBP1-210ENST00000572787 TRRAPQ9Y4A5 3859 aa0.39□□□□□ -2.35
TOPBP1-210ENST00000572787 DYNC1H1Q14204 4646 aaKnown RBP0.37□□□□□ -2.35
TOPBP1-210ENST00000572787 DNAH5Q8TE73 4624 aa0.36□□□□□ -2.35
TOPBP1-210ENST00000572787 MUC17Q685J3 4493 aa0.35□□□□□ -2.35
TOPBP1-210ENST00000572787 MT1XP80297 61 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms