RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KRTAP3-1Q9BYR8 98 aa9.98□□□□□ -0.81
VPS53-210ENST00000571456 A8MUN3 132 aa9.97□□□□□ -0.81
VPS53-210ENST00000571456 LCE2BO14633 110 aa9.93□□□□□ -0.82
VPS53-210ENST00000571456 KLKP1Q107X0 134 aa9.92□□□□□ -0.82
VPS53-210ENST00000571456 S4R3F8 94 aa9.92□□□□□ -0.82
VPS53-210ENST00000571456 SERP2Q8N6R1 65 aa9.91□□□□□ -0.82
VPS53-210ENST00000571456 KRTAP6-3Q3LI67 103 aa9.86□□□□□ -0.83
VPS53-210ENST00000571456 CSAG1Q6PB30 78 aa9.83□□□□□ -0.84
VPS53-210ENST00000571456 MT2AP02795 61 aa9.82□□□□□ -0.84
VPS53-210ENST00000571456 LCA10Q71F78 164 aa9.81□□□□□ -0.84
VPS53-210ENST00000571456 NEBP20929 6669 aa9.77□□□□□ -0.85
VPS53-210ENST00000571456 DMAC1Q96GE9 116 aa9.76□□□□□ -0.85
VPS53-210ENST00000571456 KRTAP9-3Q9BYQ3 159 aa9.76□□□□□ -0.85
VPS53-210ENST00000571456 C20orf197Q8N268 126 aa9.74□□□□□ -0.85
VPS53-210ENST00000571456 NDUFC1O43677 76 aa9.73□□□□□ -0.85
VPS53-210ENST00000571456 MT1FP04733 61 aa9.73□□□□□ -0.85
VPS53-210ENST00000571456 KRTAP19-6Q3LI70 58 aa9.73□□□□□ -0.85
VPS53-210ENST00000571456 COX7CP15954 63 aa9.72□□□□□ -0.85
VPS53-210ENST00000571456 SNURFQ9Y675 71 aa9.72□□□□□ -0.85
VPS53-210ENST00000571456 KRTAP10-10P60014 251 aa9.71□□□□□ -0.86
VPS53-210ENST00000571456 KRTAP3-3Q9BYR6 98 aa9.69□□□□□ -0.86
VPS53-210ENST00000571456 SPANXA2-OT1Q8N9U9 137 aa9.67□□□□□ -0.86
VPS53-210ENST00000571456 ACYP2P14621 99 aa9.65□□□□□ -0.86
VPS53-210ENST00000571456 ANAPC13Q9BS18 74 aa9.61□□□□□ -0.87
VPS53-210ENST00000571456 KRTAP20-1Q3LI63 56 aa9.57□□□□□ -0.88
VPS53-210ENST00000571456 H0YAA0 97 aa9.56□□□□□ -0.88
VPS53-210ENST00000571456 MUC12Q9UKN1 5478 aa9.55□□□□□ -0.88
VPS53-210ENST00000571456 SPTSSBQ8NFR3 76 aa9.51□□□□□ -0.89
VPS53-210ENST00000571456 CHKB-CPT1BH3BT56 60 aa9.45□□□□□ -0.9
VPS53-210ENST00000571456 CRIPTQ9P021 101 aa9.45□□□□□ -0.9
VPS53-210ENST00000571456 H7BZZ5 65 aa9.44□□□□□ -0.9
VPS53-210ENST00000571456 ADM2Q7Z4H4 148 aa9.34□□□□□ -0.91
VPS53-210ENST00000571456 CYSTM1Q9H1C7 97 aa9.34□□□□□ -0.91
VPS53-210ENST00000571456 CCDC179H3BU77 68 aa9.32□□□□□ -0.92
VPS53-210ENST00000571456 SPRR2GQ9BYE4 73 aa9.32□□□□□ -0.92
VPS53-210ENST00000571456 COA5Q86WW8 74 aa9.28□□□□□ -0.92
VPS53-210ENST00000571456 ATP5EP56381 51 aaPredicted RBP9.26□□□□□ -0.93
VPS53-210ENST00000571456 MDN1Q9NU22 5596 aa9.18□□□□□ -0.94
VPS53-210ENST00000571456 KRTAP19-8Q3LI54 63 aa9.17□□□□□ -0.94
VPS53-210ENST00000571456 KRTAP3-2Q9BYR7 98 aa9.17□□□□□ -0.94
VPS53-210ENST00000571456 P0C880 135 aa9.15□□□□□ -0.94
VPS53-210ENST00000571456 TMEM258P61165 79 aa9.14□□□□□ -0.95
VPS53-210ENST00000571456 Q5VV11 94 aa9.14□□□□□ -0.95
VPS53-210ENST00000571456 R4GN34 69 aa9.14□□□□□ -0.95
VPS53-210ENST00000571456 KMT2DO14686 5537 aa9.12□□□□□ -0.95
VPS53-210ENST00000571456 KRTAP2-3P0C7H8 128 aa9.08□□□□□ -0.96
VPS53-210ENST00000571456 KRTAP2-4Q9BYR9 128 aa9.08□□□□□ -0.96
VPS53-210ENST00000571456 SEC61GP60059 68 aa9.06□□□□□ -0.96
VPS53-210ENST00000571456 M0QZ58 72 aa9.05□□□□□ -0.96
VPS53-210ENST00000571456 MT1BP07438 61 aa9.03□□□□□ -0.96
VPS53-210ENST00000571456 KRTAP5-9P26371 169 aa9.03□□□□□ -0.96
VPS53-210ENST00000571456 SERP1Q9Y6X1 66 aa9.01□□□□□ -0.97
VPS53-210ENST00000571456 A6NN06 94 aa8.96□□□□□ -0.98
VPS53-210ENST00000571456 PLAC4Q8WY50 150 aa8.89□□□□□ -0.99
VPS53-210ENST00000571456 A0A1B0GU69 56 aa8.85□□□□□ -0.99
VPS53-210ENST00000571456 LINC01554Q52M75 96 aa8.83□□□□□ -1
VPS53-210ENST00000571456 PRR15LQ9BU68 103 aa8.8□□□□□ -1
VPS53-210ENST00000571456 PCP4P48539 62 aa8.79□□□□□ -1
VPS53-210ENST00000571456 A0A1B0GU33 70 aa8.78□□□□□ -1
VPS53-210ENST00000571456 KRTAP10-5P60370 271 aa8.78□□□□□ -1
VPS53-210ENST00000571456 PRO2289Q9P1D8 64 aa8.75□□□□□ -1.01
VPS53-210ENST00000571456 LINC01558Q9Y6Z2 57 aa8.74□□□□□ -1.01
VPS53-210ENST00000571456 KRTAP2-2Q9BYT5 123 aa8.73□□□□□ -1.01
VPS53-210ENST00000571456 KRTAP2-1Q9BYU5 128 aa8.73□□□□□ -1.01
VPS53-210ENST00000571456 KRTAP13-4Q3LI77 160 aa8.7□□□□□ -1.02
VPS53-210ENST00000571456 GPR98Q8WXG9 6306 aa8.67□□□□□ -1.02
VPS53-210ENST00000571456 SPRR2EP22531 72 aa8.64□□□□□ -1.03
VPS53-210ENST00000571456 SPRR2BP35325 72 aa8.64□□□□□ -1.03
VPS53-210ENST00000571456 SPRR2AP35326 72 aa8.64□□□□□ -1.03
VPS53-210ENST00000571456 V9GYY9 64 aa8.63□□□□□ -1.03
VPS53-210ENST00000571456 SMIM26A0A096LP01 95 aa8.59□□□□□ -1.03
VPS53-210ENST00000571456 MT1XP80297 61 aa8.59□□□□□ -1.03
VPS53-210ENST00000571456 SPATA8Q6RVD6 105 aa8.59□□□□□ -1.03
VPS53-210ENST00000571456 SPRR2FQ96RM1 72 aa8.55□□□□□ -1.04
VPS53-210ENST00000571456 RPS28P62857 69 aaKnown RBP8.53□□□□□ -1.04
VPS53-210ENST00000571456 A0A0D9SG42 100 aa8.51□□□□□ -1.05
VPS53-210ENST00000571456 Q1T7F1 81 aa8.51□□□□□ -1.05
VPS53-210ENST00000571456 UQCR11O14957 56 aa8.48□□□□□ -1.05
VPS53-210ENST00000571456 CAMK2N1Q7Z7J9 78 aa8.47□□□□□ -1.05
VPS53-210ENST00000571456 SPINT4Q6UDR6 99 aa8.41□□□□□ -1.06
VPS53-210ENST00000571456 KRTAP12-1P59990 96 aa8.4□□□□□ -1.06
VPS53-210ENST00000571456 KRTAP12-2P59991 146 aa8.4□□□□□ -1.06
VPS53-210ENST00000571456 LCE1AQ5T7P2 110 aa8.4□□□□□ -1.06
VPS53-210ENST00000571456 SPRR2DP22532 72 aa8.37□□□□□ -1.07
VPS53-210ENST00000571456 A8MU10 97 aa8.34□□□□□ -1.07
VPS53-210ENST00000571456 PSPHP1O15172 72 aa8.31□□□□□ -1.08
VPS53-210ENST00000571456 MIR22HGQ0VDD5 57 aa8.28□□□□□ -1.08
VPS53-210ENST00000571456 KRTAP8-1Q8IUC2 63 aa8.22□□□□□ -1.09
VPS53-210ENST00000571456 KRTAP10-12P60413 245 aa8.21□□□□□ -1.1
VPS53-210ENST00000571456 LCE3BQ5TA77 95 aa8.21□□□□□ -1.1
VPS53-210ENST00000571456 KRTAP10-7P60409 375 aaPredicted RBP8.17□□□□□ -1.1
VPS53-210ENST00000571456 K7ERS5 55 aa8.14□□□□□ -1.11
VPS53-210ENST00000571456 A6NED7 52 aa8.13□□□□□ -1.11
VPS53-210ENST00000571456 DSTQ03001 7570 aaKnown RBP8.04□□□□□ -1.12
VPS53-210ENST00000571456 KRTAP4-8A0A0G2JLE6 195 aa8□□□□□ -1.13
VPS53-210ENST00000571456 KRTAP4-8Q9BYQ9 185 aa8□□□□□ -1.13
VPS53-210ENST00000571456 TNP1P09430 55 aa7.97□□□□□ -1.13
VPS53-210ENST00000571456 C10orf95Q9H7T3 257 aa7.97□□□□□ -1.13
VPS53-210ENST00000571456 CDC42SE1Q9NRR8 79 aa7.9□□□□□ -1.14
VPS53-210ENST00000571456 KRTAP4-9Q9BYQ8 210 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms