RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CSAG1Q6PB30 78 aa6.69□□□□□ -1.34
CLN3-236ENST00000568558 C1orf64Q8NEQ6 169 aa6.69□□□□□ -1.34
CLN3-236ENST00000568558 LCA10Q71F78 164 aa6.67□□□□□ -1.34
CLN3-236ENST00000568558 UQCRQO14949 82 aa6.66□□□□□ -1.34
CLN3-236ENST00000568558 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
CLN3-236ENST00000568558 LOC101927531A0A1B0GV80 90 aa6.64□□□□□ -1.35
CLN3-236ENST00000568558 H0Y9P7 68 aa6.64□□□□□ -1.35
CLN3-236ENST00000568558 J3QR89 54 aa6.64□□□□□ -1.35
CLN3-236ENST00000568558 KLKP1Q107X0 134 aa6.61□□□□□ -1.35
CLN3-236ENST00000568558 OCR1Q9BZK8 76 aa6.6□□□□□ -1.35
CLN3-236ENST00000568558 KRTAP5-9P26371 169 aa6.59□□□□□ -1.35
CLN3-236ENST00000568558 KRTAP20-1Q3LI63 56 aa6.59□□□□□ -1.35
CLN3-236ENST00000568558 ATOX1O00244 68 aa6.58□□□□□ -1.36
CLN3-236ENST00000568558 KRTAP3-3Q9BYR6 98 aa6.56□□□□□ -1.36
CLN3-236ENST00000568558 LINC00208Q96KT6 92 aa6.55□□□□□ -1.36
CLN3-236ENST00000568558 KMT2DO14686 5537 aa6.54□□□□□ -1.36
CLN3-236ENST00000568558 MDN1Q9NU22 5596 aa6.52□□□□□ -1.37
CLN3-236ENST00000568558 MT-ATP8P03928 68 aa6.5□□□□□ -1.37
CLN3-236ENST00000568558 MP68P56378 58 aa6.5□□□□□ -1.37
CLN3-236ENST00000568558 CRIPTQ9P021 101 aa6.5□□□□□ -1.37
CLN3-236ENST00000568558 IMUPQ9GZP8 106 aa6.48□□□□□ -1.37
CLN3-236ENST00000568558 K7ERU9 68 aa6.46□□□□□ -1.38
CLN3-236ENST00000568558 SCGB1A1P11684 91 aa6.46□□□□□ -1.38
CLN3-236ENST00000568558 A8MUN3 132 aa6.4□□□□□ -1.38
CLN3-236ENST00000568558 H3BPC8 53 aa6.4□□□□□ -1.38
CLN3-236ENST00000568558 NDUFC1O43677 76 aa6.37□□□□□ -1.39
CLN3-236ENST00000568558 H0YAA0 97 aa6.36□□□□□ -1.39
CLN3-236ENST00000568558 KRTAP2-3P0C7H8 128 aa6.35□□□□□ -1.39
CLN3-236ENST00000568558 KRTAP2-4Q9BYR9 128 aa6.35□□□□□ -1.39
CLN3-236ENST00000568558 TRAV7A0A075B6U4 112 aa6.33□□□□□ -1.4
CLN3-236ENST00000568558 DMAC1Q96GE9 116 aa6.32□□□□□ -1.4
CLN3-236ENST00000568558 SPRR2FQ96RM1 72 aa6.32□□□□□ -1.4
CLN3-236ENST00000568558 PRO2289Q9P1D8 64 aa6.29□□□□□ -1.4
CLN3-236ENST00000568558 SPRR2EP22531 72 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 SPRR2BP35325 72 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 SPRR2AP35326 72 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 MT1XP80297 61 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 SMIM20Q8N5G0 67 aa6.28□□□□□ -1.4
CLN3-236ENST00000568558 KRTAP8-1Q8IUC2 63 aa6.22□□□□□ -1.41
CLN3-236ENST00000568558 SNURFQ9Y675 71 aa6.22□□□□□ -1.41
CLN3-236ENST00000568558 PLAC4Q8WY50 150 aa6.21□□□□□ -1.42
CLN3-236ENST00000568558 KRTAP12-2P59991 146 aa6.18□□□□□ -1.42
CLN3-236ENST00000568558 LCE1AQ5T7P2 110 aa6.18□□□□□ -1.42
CLN3-236ENST00000568558 P0C880 135 aa6.17□□□□□ -1.42
CLN3-236ENST00000568558 SERP2Q8N6R1 65 aa6.16□□□□□ -1.42
CLN3-236ENST00000568558 ACYP2P14621 99 aa6.15□□□□□ -1.42
CLN3-236ENST00000568558 C20orf197Q8N268 126 aa6.15□□□□□ -1.42
CLN3-236ENST00000568558 KRTAP3-2Q9BYR7 98 aa6.15□□□□□ -1.42
CLN3-236ENST00000568558 KRTAP2-2Q9BYT5 123 aa6.14□□□□□ -1.43
CLN3-236ENST00000568558 KRTAP2-1Q9BYU5 128 aa6.14□□□□□ -1.43
CLN3-236ENST00000568558 R4GN34 69 aa6.14□□□□□ -1.43
CLN3-236ENST00000568558 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.43
CLN3-236ENST00000568558 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.43
CLN3-236ENST00000568558 M0QZ58 72 aa6.08□□□□□ -1.44
CLN3-236ENST00000568558 SPRR2DP22532 72 aa6.08□□□□□ -1.44
CLN3-236ENST00000568558 SPANXA2-OT1Q8N9U9 137 aa6.07□□□□□ -1.44
CLN3-236ENST00000568558 CHKB-CPT1BH3BT56 60 aa6.04□□□□□ -1.44
CLN3-236ENST00000568558 COX7CP15954 63 aa6.01□□□□□ -1.45
CLN3-236ENST00000568558 SPTSSBQ8NFR3 76 aa6.01□□□□□ -1.45
CLN3-236ENST00000568558 LINC01554Q52M75 96 aa6□□□□□ -1.45
CLN3-236ENST00000568558 KRTAP10-7P60409 375 aaPredicted RBP5.99□□□□□ -1.45
CLN3-236ENST00000568558 CYSTM1Q9H1C7 97 aa5.99□□□□□ -1.45
CLN3-236ENST00000568558 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
CLN3-236ENST00000568558 LCE3BQ5TA77 95 aa5.94□□□□□ -1.46
CLN3-236ENST00000568558 COA5Q86WW8 74 aa5.93□□□□□ -1.46
CLN3-236ENST00000568558 H7BZZ5 65 aa5.92□□□□□ -1.46
CLN3-236ENST00000568558 ANAPC13Q9BS18 74 aa5.86□□□□□ -1.47
CLN3-236ENST00000568558 KRTAP13-4Q3LI77 160 aa5.84□□□□□ -1.47
CLN3-236ENST00000568558 CCDC179H3BU77 68 aa5.79□□□□□ -1.48
CLN3-236ENST00000568558 DSTQ03001 7570 aaKnown RBP5.74□□□□□ -1.49
CLN3-236ENST00000568558 SERP1Q9Y6X1 66 aa5.7□□□□□ -1.5
CLN3-236ENST00000568558 SEC61GP60059 68 aa5.69□□□□□ -1.5
CLN3-236ENST00000568558 GPR98Q8WXG9 6306 aa5.68□□□□□ -1.5
CLN3-236ENST00000568558 SPATA8Q6RVD6 105 aa5.66□□□□□ -1.5
CLN3-236ENST00000568558 A0A1B0GU33 70 aa5.64□□□□□ -1.51
CLN3-236ENST00000568558 A0A0D9SG42 100 aa5.63□□□□□ -1.51
CLN3-236ENST00000568558 LCE5AQ5TCM9 118 aa5.63□□□□□ -1.51
CLN3-236ENST00000568558 KRTAP19-7Q3SYF9 63 aa5.62□□□□□ -1.51
CLN3-236ENST00000568558 CAMK2N1Q7Z7J9 78 aa5.6□□□□□ -1.51
CLN3-236ENST00000568558 A0A1B0GU69 56 aa5.59□□□□□ -1.51
CLN3-236ENST00000568558 MT1EP04732 61 aa5.59□□□□□ -1.51
CLN3-236ENST00000568558 ATP5EP56381 51 aaPredicted RBP5.59□□□□□ -1.51
CLN3-236ENST00000568558 KRTAP4-9Q9BYQ8 210 aa5.59□□□□□ -1.51
CLN3-236ENST00000568558 KRTAP19-3Q7Z4W3 81 aa5.58□□□□□ -1.52
CLN3-236ENST00000568558 KRTAP12-1P59990 96 aa5.54□□□□□ -1.52
CLN3-236ENST00000568558 SPINT4Q6UDR6 99 aa5.52□□□□□ -1.53
CLN3-236ENST00000568558 TMEM258P61165 79 aa5.51□□□□□ -1.53
CLN3-236ENST00000568558 A8MU10 97 aa5.5□□□□□ -1.53
CLN3-236ENST00000568558 LINC01558Q9Y6Z2 57 aa5.45□□□□□ -1.54
CLN3-236ENST00000568558 SMIM26A0A096LP01 95 aa5.44□□□□□ -1.54
CLN3-236ENST00000568558 LCE1DQ5T752 114 aa5.43□□□□□ -1.54
CLN3-236ENST00000568558 MT1GP13640 62 aa5.42□□□□□ -1.54
CLN3-236ENST00000568558 PRR15LQ9BU68 103 aa5.42□□□□□ -1.54
CLN3-236ENST00000568558 KRTAP19-5Q3LI72 72 aa5.4□□□□□ -1.54
CLN3-236ENST00000568558 PP632Q6XCG6 107 aa5.37□□□□□ -1.55
CLN3-236ENST00000568558 LCE4AQ5TA78 99 aa5.36□□□□□ -1.55
CLN3-236ENST00000568558 HMCN1Q96RW7 5635 aa5.36□□□□□ -1.55
CLN3-236ENST00000568558 MT4P47944 62 aa5.34□□□□□ -1.55
CLN3-236ENST00000568558 MT1MQ8N339 61 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms