RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 DNAH5Q8TE73 4624 aa3.71□□□□□ -1.82
TCF4-216ENST00000562680 KRTAP3-1Q9BYR8 98 aa3.7□□□□□ -1.82
TCF4-216ENST00000562680 DNAH3Q8TD57 4116 aa3.69□□□□□ -1.82
TCF4-216ENST00000562680 KRTAP10-10P60014 251 aa3.68□□□□□ -1.82
TCF4-216ENST00000562680 DYNC1H1Q14204 4646 aaKnown RBP3.66□□□□□ -1.82
TCF4-216ENST00000562680 STARD9Q9P2P6 4700 aa3.66□□□□□ -1.82
TCF4-216ENST00000562680 PRKDCP78527 4128 aaKnown RBP3.66□□□□□ -1.82
TCF4-216ENST00000562680 DYNC2H1Q8NCM8 4307 aaKnown RBP3.62□□□□□ -1.83
TCF4-216ENST00000562680 DNAH6Q9C0G6 4158 aa3.61□□□□□ -1.83
TCF4-216ENST00000562680 DNAH2Q9P225 4427 aa3.59□□□□□ -1.83
TCF4-216ENST00000562680 LRP1BQ9NZR2 4599 aa3.59□□□□□ -1.83
TCF4-216ENST00000562680 FAT2Q9NYQ8 4349 aa3.55□□□□□ -1.84
TCF4-216ENST00000562680 KRTAP10-6P60371 365 aaPredicted RBP3.54□□□□□ -1.84
TCF4-216ENST00000562680 CMYA5Q8N3K9 4069 aa3.53□□□□□ -1.84
TCF4-216ENST00000562680 KRTAP12-2P59991 146 aa3.53□□□□□ -1.84
TCF4-216ENST00000562680 KRTAP3-3Q9BYR6 98 aa3.52□□□□□ -1.85
TCF4-216ENST00000562680 SACSQ9NZJ4 4579 aa3.51□□□□□ -1.85
TCF4-216ENST00000562680 DNAH8Q96JB1 4490 aa3.51□□□□□ -1.85
TCF4-216ENST00000562680 FAT1Q14517 4588 aa3.5□□□□□ -1.85
TCF4-216ENST00000562680 KRTAP12-1P59990 96 aa3.49□□□□□ -1.85
TCF4-216ENST00000562680 RYR2Q92736 4967 aa3.48□□□□□ -1.85
TCF4-216ENST00000562680 KRTAP3-2Q9BYR7 98 aa3.48□□□□□ -1.85
TCF4-216ENST00000562680 RYR1P21817 5038 aa3.47□□□□□ -1.85
TCF4-216ENST00000562680 KIAA1109Q2LD37 5005 aa3.46□□□□□ -1.86
TCF4-216ENST00000562680 KRTAP13-4Q3LI77 160 aa3.45□□□□□ -1.86
TCF4-216ENST00000562680 DNAH7Q8WXX0 4024 aa3.44□□□□□ -1.86
TCF4-216ENST00000562680 RYR3Q15413 4870 aa3.43□□□□□ -1.86
TCF4-216ENST00000562680 KMT2AQ03164 3969 aa3.41□□□□□ -1.86
TCF4-216ENST00000562680 APOBP04114 4563 aaKnown RBP3.4□□□□□ -1.87
TCF4-216ENST00000562680 CSMD3Q7Z407 3707 aa3.39□□□□□ -1.87
TCF4-216ENST00000562680 BIRC6Q9NR09 4857 aa3.39□□□□□ -1.87
TCF4-216ENST00000562680 KRTAP17-1Q9BYP8 105 aa3.38□□□□□ -1.87
TCF4-216ENST00000562680 KRTAP4-1Q9BYQ7 146 aa3.38□□□□□ -1.87
TCF4-216ENST00000562680 VPS13BQ7Z7G8 4022 aa3.33□□□□□ -1.88
TCF4-216ENST00000562680 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
TCF4-216ENST00000562680 MT1HP80294 61 aa3.3□□□□□ -1.88
TCF4-216ENST00000562680 HYDINQ4G0P3 5121 aa3.29□□□□□ -1.88
TCF4-216ENST00000562680 HERC2O95714 4834 aa3.29□□□□□ -1.88
TCF4-216ENST00000562680 FAT3Q8TDW7 4589 aa3.27□□□□□ -1.89
TCF4-216ENST00000562680 LYSTQ99698 3801 aa3.26□□□□□ -1.89
TCF4-216ENST00000562680 HSPG2P98160 4391 aa3.25□□□□□ -1.89
TCF4-216ENST00000562680 PKD1P98161 4303 aa3.24□□□□□ -1.89
TCF4-216ENST00000562680 MT2AP02795 61 aa3.23□□□□□ -1.89
TCF4-216ENST00000562680 LORP23490 312 aaPredicted RBP3.23□□□□□ -1.89
TCF4-216ENST00000562680 SPRR2GQ9BYE4 73 aa3.23□□□□□ -1.89
TCF4-216ENST00000562680 LRP1Q07954 4544 aaKnown RBP3.23□□□□□ -1.89
TCF4-216ENST00000562680 MYCBP2O75592 4640 aa3.23□□□□□ -1.89
TCF4-216ENST00000562680 KMT2CQ8NEZ4 4911 aaKnown RBP3.21□□□□□ -1.9
TCF4-216ENST00000562680 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
TCF4-216ENST00000562680 HERC1Q15751 4861 aa3.19□□□□□ -1.9
TCF4-216ENST00000562680 PKHD1P08F94 4074 aa3.18□□□□□ -1.9
TCF4-216ENST00000562680 MT1FP04733 61 aa3.16□□□□□ -1.9
TCF4-216ENST00000562680 FRAS1Q86XX4 4008 aa3.12□□□□□ -1.91
TCF4-216ENST00000562680 PKHD1L1Q86WI1 4243 aa3.12□□□□□ -1.91
TCF4-216ENST00000562680 KRTAP19-8Q3LI54 63 aa3.1□□□□□ -1.91
TCF4-216ENST00000562680 LCE2CQ5TA81 110 aa3.1□□□□□ -1.91
TCF4-216ENST00000562680 KRTAP12-3P60328 96 aa3.08□□□□□ -1.92
TCF4-216ENST00000562680 EPPK1P58107 5090 aaKnown RBP3.08□□□□□ -1.92
TCF4-216ENST00000562680 ABCA13Q86UQ4 5058 aa3.06□□□□□ -1.92
TCF4-216ENST00000562680 LCE3AQ5TA76 89 aa3.05□□□□□ -1.92
TCF4-216ENST00000562680 KRTAP19-1Q8IUB9 90 aa3.05□□□□□ -1.92
TCF4-216ENST00000562680 LRP2P98164 4655 aa3.05□□□□□ -1.92
TCF4-216ENST00000562680 PCLOQ9Y6V0 5065 aa3.05□□□□□ -1.92
TCF4-216ENST00000562680 KRTAP19-2Q3LHN2 52 aa3.05□□□□□ -1.92
TCF4-216ENST00000562680 KRTAP9-8Q9BYQ0 159 aa3.04□□□□□ -1.92
TCF4-216ENST00000562680 TNXBP22105 4242 aa3.04□□□□□ -1.92
TCF4-216ENST00000562680 KRTAP8-1Q8IUC2 63 aa3□□□□□ -1.93
TCF4-216ENST00000562680 KRTAP19-4Q3LI73 84 aa2.99□□□□□ -1.93
TCF4-216ENST00000562680 KRTAP9-3Q9BYQ3 159 aa2.96□□□□□ -1.93
TCF4-216ENST00000562680 MT1BP07438 61 aa2.95□□□□□ -1.94
TCF4-216ENST00000562680 SPRR5A0A1B0GTR4 108 aa2.95□□□□□ -1.94
TCF4-216ENST00000562680 KRTAP10-5P60370 271 aa2.94□□□□□ -1.94
TCF4-216ENST00000562680 CRCT1Q9UGL9 99 aa2.94□□□□□ -1.94
TCF4-216ENST00000562680 MUC17Q685J3 4493 aa2.94□□□□□ -1.94
TCF4-216ENST00000562680 MT1XP80297 61 aa2.9□□□□□ -1.95
TCF4-216ENST00000562680 FLGP20930 4061 aaPredicted RBP2.89□□□□□ -1.95
TCF4-216ENST00000562680 LPAP08519 4548 aa2.88□□□□□ -1.95
TCF4-216ENST00000562680 LCE2AQ5TA79 106 aaPredicted RBP2.88□□□□□ -1.95
TCF4-216ENST00000562680 HMCN2Q8NDA2 5059 aa2.87□□□□□ -1.95
TCF4-216ENST00000562680 RNF213Q63HN8 5207 aa2.84□□□□□ -1.95
TCF4-216ENST00000562680 KRTAP19-5Q3LI72 72 aa2.83□□□□□ -1.96
TCF4-216ENST00000562680 KRTAP10-7P60409 375 aaPredicted RBP2.82□□□□□ -1.96
TCF4-216ENST00000562680 LCE2BO14633 110 aa2.81□□□□□ -1.96
TCF4-216ENST00000562680 FAT4Q6V0I7 4981 aa2.8□□□□□ -1.96
TCF4-216ENST00000562680 SPRR2FQ96RM1 72 aa2.8□□□□□ -1.96
TCF4-216ENST00000562680 LCE2DQ5TA82 110 aaPredicted RBP2.79□□□□□ -1.96
TCF4-216ENST00000562680 KRTAP19-6Q3LI70 58 aa2.77□□□□□ -1.97
TCF4-216ENST00000562680 LCE3CQ5T5A8 94 aa2.76□□□□□ -1.97
TCF4-216ENST00000562680 UBR4Q5T4S7 5183 aa2.71□□□□□ -1.98
TCF4-216ENST00000562680 MT1GP13640 62 aa2.69□□□□□ -1.98
TCF4-216ENST00000562680 KRTAP9-2Q9BYQ4 174 aa2.67□□□□□ -1.98
TCF4-216ENST00000562680 KRTAP4-8A0A0G2JLE6 195 aa2.65□□□□□ -1.99
TCF4-216ENST00000562680 SPRR2EP22531 72 aa2.65□□□□□ -1.99
TCF4-216ENST00000562680 SPRR2BP35325 72 aa2.65□□□□□ -1.99
TCF4-216ENST00000562680 SPRR2AP35326 72 aa2.65□□□□□ -1.99
TCF4-216ENST00000562680 KRTAP4-8Q9BYQ9 185 aa2.65□□□□□ -1.99
TCF4-216ENST00000562680 MT1EP04732 61 aa2.61□□□□□ -1.99
TCF4-216ENST00000562680 KRTAP19-3Q7Z4W3 81 aa2.61□□□□□ -1.99
TCF4-216ENST00000562680 MT1LQ93083 61 aa2.59□□□□□ -2
TCF4-216ENST00000562680 KRTAP9-6A0A140TA67 174 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms