RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 LINC00587B1AMM8 73 aa1.26□□□□□ -2.21
VPS13C-210ENST00000561258 SMIM4Q8WVI0 70 aa1.26□□□□□ -2.21
VPS13C-210ENST00000561258 PPP1R1CQ8WVI7 109 aa1.26□□□□□ -2.21
VPS13C-210ENST00000561258 C2orf88Q9BSF0 95 aa1.26□□□□□ -2.21
VPS13C-210ENST00000561258 SERP1Q9Y6X1 66 aa1.26□□□□□ -2.21
VPS13C-210ENST00000561258 S100A7L2Q5SY68 101 aa1.25□□□□□ -2.21
VPS13C-210ENST00000561258 RPL39P62891 51 aaKnown RBP1.24□□□□□ -2.21
VPS13C-210ENST00000561258 BAGE2Q86Y30 109 aa1.24□□□□□ -2.21
VPS13C-210ENST00000561258 C20orf197Q8N268 126 aa1.24□□□□□ -2.21
VPS13C-210ENST00000561258 POLR2KP53803 58 aaKnown RBP1.23□□□□□ -2.21
VPS13C-210ENST00000561258 SPRR2GQ9BYE4 73 aa1.23□□□□□ -2.21
VPS13C-210ENST00000561258 PRO1933Q9H354 126 aa1.23□□□□□ -2.21
VPS13C-210ENST00000561258 SPRR1AP35321 89 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 ALKAL2Q6UX46 152 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 TOMM5Q8N4H5 51 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 SPTSSBQ8NFR3 76 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 COX7B2Q8TF08 81 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 TCEAL7Q9BRU2 100 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 KCNQ1DNQ9H478 68 aa1.22□□□□□ -2.21
VPS13C-210ENST00000561258 SIX6O95475 246 aa1.21□□□□□ -2.22
VPS13C-210ENST00000561258 IFI27P40305 119 aaPredicted RBP1.21□□□□□ -2.22
VPS13C-210ENST00000561258 Q6ZRX8 168 aa1.21□□□□□ -2.22
VPS13C-210ENST00000561258 C9orf62Q8N4C0 152 aa1.21□□□□□ -2.22
VPS13C-210ENST00000561258 PPP1R17O96001 155 aa1.2□□□□□ -2.22
VPS13C-210ENST00000561258 SEC11AP67812 179 aa1.2□□□□□ -2.22
VPS13C-210ENST00000561258 Q8N8P6 123 aa1.2□□□□□ -2.22
VPS13C-210ENST00000561258 DSCR8Q96T75 97 aa1.2□□□□□ -2.22
VPS13C-210ENST00000561258 CDKN2A-AS1Q9UH64 79 aa1.2□□□□□ -2.22
VPS13C-210ENST00000561258 A0A0D9SG42 100 aa1.19□□□□□ -2.22
VPS13C-210ENST00000561258 TRBV10-3A0A0K0K1G6 114 aa1.19□□□□□ -2.22
VPS13C-210ENST00000561258 CNFNQ9BYD5 112 aa1.19□□□□□ -2.22
VPS13C-210ENST00000561258 A0A087WXM4 84 aa1.18□□□□□ -2.22
VPS13C-210ENST00000561258 COX17Q14061 63 aa1.18□□□□□ -2.22
VPS13C-210ENST00000561258 CTXND1A0A1B0GTU2 59 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 D6R8Y8 96 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 SPRR1BP22528 89 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 SERF2P84101 59 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 KRTAP20-2Q3LI61 65 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 H1FX-AS1Q4G0G2 97 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 WFDC13Q8IUB5 93 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 DEFB105AQ8NG35 78 aa1.17□□□□□ -2.22
VPS13C-210ENST00000561258 SPINK8P0C7L1 97 aa1.16□□□□□ -2.22
VPS13C-210ENST00000561258 LINC00158P58513 81 aa1.16□□□□□ -2.22
VPS13C-210ENST00000561258 MT1XP80297 61 aa1.16□□□□□ -2.22
VPS13C-210ENST00000561258 V9GYV3 84 aa1.16□□□□□ -2.22
VPS13C-210ENST00000561258 NAP1L6A6NFF2 107 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 HCG22E2RYF7 251 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 GNG4P50150 75 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 SPINK7P58062 85 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 AMELXQ99217 191 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 C20orf78Q9BR46 151 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 SMIM2Q9BVW6 85 aa1.15□□□□□ -2.23
VPS13C-210ENST00000561258 KRTAP19-3Q7Z4W3 81 aa1.14□□□□□ -2.23
VPS13C-210ENST00000561258 NXT2Q9NPJ8 142 aaKnown RBP1.14□□□□□ -2.23
VPS13C-210ENST00000561258 A0A1B0GUT8 65 aa1.13□□□□□ -2.23
VPS13C-210ENST00000561258 SFTA2Q6UW10 78 aa1.13□□□□□ -2.23
VPS13C-210ENST00000561258 Q9H521 79 aa1.13□□□□□ -2.23
VPS13C-210ENST00000561258 TRAV13-2A0A0B4J235 113 aa1.12□□□□□ -2.23
VPS13C-210ENST00000561258 TRBV7-7A0A0K0K1E9 115 aa1.12□□□□□ -2.23
VPS13C-210ENST00000561258 F8WEM9 126 aa1.12□□□□□ -2.23
VPS13C-210ENST00000561258 H0YAA0 97 aa1.12□□□□□ -2.23
VPS13C-210ENST00000561258 MPC2O95563 127 aa1.11□□□□□ -2.23
VPS13C-210ENST00000561258 Q5BKY6 102 aa1.11□□□□□ -2.23
VPS13C-210ENST00000561258 MRPL54Q6P161 138 aaKnown RBP1.11□□□□□ -2.23
VPS13C-210ENST00000561258 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
VPS13C-210ENST00000561258 ZNF815PA8K554 130 aa1.1□□□□□ -2.23
VPS13C-210ENST00000561258 C10orf95Q9H7T3 257 aa1.1□□□□□ -2.23
VPS13C-210ENST00000561258 CRIPTQ9P021 101 aa1.1□□□□□ -2.23
VPS13C-210ENST00000561258 IGIPA6NJ69 53 aa1.09□□□□□ -2.23
VPS13C-210ENST00000561258 SMIM13P0DJ93 91 aa1.09□□□□□ -2.23
VPS13C-210ENST00000561258 S100A1P23297 94 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 Q6JHZ5 121 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 SPANXDQ9BXN6 97 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 MANBALQ9NQG1 85 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 GNG13Q9P2W3 67 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 V9GYH0 126 aa1.08□□□□□ -2.24
VPS13C-210ENST00000561258 C3orf79P0CE67 100 aa1.07□□□□□ -2.24
VPS13C-210ENST00000561258 MT1GP13640 62 aa1.07□□□□□ -2.24
VPS13C-210ENST00000561258 COX7BP24311 80 aa1.07□□□□□ -2.24
VPS13C-210ENST00000561258 FAM213BQ8TBF2 198 aa1.07□□□□□ -2.24
VPS13C-210ENST00000561258 MT1EP04732 61 aa1.06□□□□□ -2.24
VPS13C-210ENST00000561258 ACYP2P14621 99 aa1.06□□□□□ -2.24
VPS13C-210ENST00000561258 SMIM11BQ8TCY0 68 aa1.06□□□□□ -2.24
VPS13C-210ENST00000561258 IGLV5-48A0A075B6I7 105 aa1.05□□□□□ -2.24
VPS13C-210ENST00000561258 S100PP25815 95 aa1.05□□□□□ -2.24
VPS13C-210ENST00000561258 SYNE1Q8NF91 8797 aaKnown RBP1.05□□□□□ -2.24
VPS13C-210ENST00000561258 K7EMI3 77 aa1.04□□□□□ -2.24
VPS13C-210ENST00000561258 S100A8P05109 93 aa1.04□□□□□ -2.24
VPS13C-210ENST00000561258 TMEM170BQ5T4T1 132 aa1.04□□□□□ -2.24
VPS13C-210ENST00000561258 MT1MQ8N339 61 aa1.04□□□□□ -2.24
VPS13C-210ENST00000561258 S4R3F8 94 aa1.04□□□□□ -2.24
VPS13C-210ENST00000561258 UMAD1C9J7I0 102 aa1.03□□□□□ -2.24
VPS13C-210ENST00000561258 IGLC3P0DOY3 106 aa1.03□□□□□ -2.24
VPS13C-210ENST00000561258 KRTAP19-7Q3SYF9 63 aa1.03□□□□□ -2.24
VPS13C-210ENST00000561258 CYP4F30PQ9H0H9 118 aa1.03□□□□□ -2.24
VPS13C-210ENST00000561258 LINC01549A6NIU2 74 aa1.02□□□□□ -2.25
VPS13C-210ENST00000561258 SPATA8Q6RVD6 105 aa1.02□□□□□ -2.25
VPS13C-210ENST00000561258 PRR15LQ9BU68 103 aa1.02□□□□□ -2.25
VPS13C-210ENST00000561258 MYMXA0A1B0GTQ4 84 aa1.01□□□□□ -2.25
VPS13C-210ENST00000561258 BAGE3Q86Y29 109 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms