RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 FRYLO94915 3013 aa-2.72□□□□□ -2.85
VPS13C-205ENST00000558088 ERVK-7P63135 1459 aa-2.72□□□□□ -2.85
VPS13C-205ENST00000558088 DNMBPQ6XZF7 1577 aa-2.73□□□□□ -2.85
VPS13C-205ENST00000558088 INO80Q9ULG1 1556 aaPredicted RBP-2.73□□□□□ -2.85
VPS13C-205ENST00000558088 ENHOQ6UWT2 76 aa-2.73□□□□□ -2.85
VPS13C-205ENST00000558088 LEAP2Q969E1 77 aa-2.73□□□□□ -2.85
VPS13C-205ENST00000558088 PCNTO95613 3336 aa-2.74□□□□□ -2.85
VPS13C-205ENST00000558088 PPLO60437 1756 aa-2.75□□□□□ -2.85
VPS13C-205ENST00000558088 CD163L1Q9NR16 1453 aa-2.76□□□□□ -2.85
VPS13C-205ENST00000558088 S100A8P05109 93 aa-2.76□□□□□ -2.85
VPS13C-205ENST00000558088 PKIAP61925 76 aa-2.77□□□□□ -2.85
VPS13C-205ENST00000558088 ABRACLQ9P1F3 81 aa-2.78□□□□□ -2.85
VPS13C-205ENST00000558088 CFAP43Q8NDM7 1665 aa-2.79□□□□□ -2.86
VPS13C-205ENST00000558088 MED14O60244 1454 aa-2.79□□□□□ -2.86
VPS13C-205ENST00000558088 MAP3K4Q9Y6R4 1608 aa-2.79□□□□□ -2.86
VPS13C-205ENST00000558088 AKAP12Q02952 1782 aa-2.81□□□□□ -2.86
VPS13C-205ENST00000558088 ANKRD26Q9UPS8 1709 aa-2.82□□□□□ -2.86
VPS13C-205ENST00000558088 KIF14Q15058 1648 aa-2.82□□□□□ -2.86
VPS13C-205ENST00000558088 WDFY4Q6ZS81 3184 aa-2.83□□□□□ -2.86
VPS13C-205ENST00000558088 KDM5DQ9BY66 1539 aa-2.83□□□□□ -2.86
VPS13C-205ENST00000558088 KAAG1Q9UBP8 84 aa-2.84□□□□□ -2.86
VPS13C-205ENST00000558088 DEFB121Q5J5C9 76 aa-2.85□□□□□ -2.87
VPS13C-205ENST00000558088 H3BVH4 76 aa-2.86□□□□□ -2.87
VPS13C-205ENST00000558088 V9GYS6 101 aa-2.86□□□□□ -2.87
VPS13C-205ENST00000558088 MUC3AQ02505 3323 aa-2.87□□□□□ -2.87
VPS13C-205ENST00000558088 TDRG1Q3Y452 100 aa-2.87□□□□□ -2.87
VPS13C-205ENST00000558088 SZT2Q5T011 3432 aa-2.87□□□□□ -2.87
VPS13C-205ENST00000558088 ASXL1Q8IXJ9 1541 aa-2.88□□□□□ -2.87
VPS13C-205ENST00000558088 NHSQ6T4R5 1651 aa-2.88□□□□□ -2.87
VPS13C-205ENST00000558088 DCHS1Q96JQ0 3298 aa-2.88□□□□□ -2.87
VPS13C-205ENST00000558088 H3BUT2 72 aa-2.89□□□□□ -2.87
VPS13C-205ENST00000558088 ADIRFQ15847 76 aa-2.89□□□□□ -2.87
VPS13C-205ENST00000558088 ABCC6O95255 1503 aa-2.89□□□□□ -2.87
VPS13C-205ENST00000558088 KIF21BO75037 1637 aa-2.9□□□□□ -2.87
VPS13C-205ENST00000558088 MYO5CQ9NQX4 1742 aa-2.9□□□□□ -2.87
VPS13C-205ENST00000558088 EP400Q96L91 3159 aa-2.9□□□□□ -2.87
VPS13C-205ENST00000558088 CLASP1Q7Z460 1538 aa-2.91□□□□□ -2.88
VPS13C-205ENST00000558088 PREX2Q70Z35 1606 aa-2.91□□□□□ -2.88
VPS13C-205ENST00000558088 ST20Q9HBF5 79 aa-2.92□□□□□ -2.88
VPS13C-205ENST00000558088 RRBP1Q9P2E9 1410 aaKnown RBP-2.93□□□□□ -2.88
VPS13C-205ENST00000558088 EIF2AK4Q9P2K8 1649 aaKnown RBP-2.93□□□□□ -2.88
VPS13C-205ENST00000558088 ABCC3O15438 1527 aa-2.93□□□□□ -2.88
VPS13C-205ENST00000558088 DNAH14Q0VDD8 3507 aa-2.94□□□□□ -2.88
VPS13C-205ENST00000558088 CROCC2H7BZ55 1655 aa-2.94□□□□□ -2.88
VPS13C-205ENST00000558088 LMTK2Q8IWU2 1503 aa-2.94□□□□□ -2.88
VPS13C-205ENST00000558088 TTC37Q6PGP7 1564 aa-2.95□□□□□ -2.88
VPS13C-205ENST00000558088 DEFB114Q30KQ6 69 aa-2.95□□□□□ -2.88
VPS13C-205ENST00000558088 VPS8Q8N3P4 1428 aa-2.95□□□□□ -2.88
VPS13C-205ENST00000558088 MKI67P46013 3256 aaKnown RBP-2.95□□□□□ -2.88
VPS13C-205ENST00000558088 SMIM27A0A1W2PRY6 76 aa-2.96□□□□□ -2.88
VPS13C-205ENST00000558088 UACAQ9BZF9 1416 aa-2.96□□□□□ -2.88
VPS13C-205ENST00000558088 TTTY10Q9BZA0 68 aa-2.98□□□□□ -2.89
VPS13C-205ENST00000558088 DIP2AQ14689 1571 aa-3□□□□□ -2.89
VPS13C-205ENST00000558088 MROH1Q8NDA8 1641 aa-3□□□□□ -2.89
VPS13C-205ENST00000558088 WFDC10BQ8IUB3 73 aa-3□□□□□ -2.89
VPS13C-205ENST00000558088 S100A13Q99584 98 aa-3□□□□□ -2.89
VPS13C-205ENST00000558088 EEA1Q15075 1411 aa-3.01□□□□□ -2.89
VPS13C-205ENST00000558088 CFAP47Q6ZTR5 3102 aa-3.01□□□□□ -2.89
VPS13C-205ENST00000558088 FAM208AQ9UK61 1670 aaKnown RBP-3.02□□□□□ -2.89
VPS13C-205ENST00000558088 C3P01024 1663 aa-3.03□□□□□ -2.89
VPS13C-205ENST00000558088 ATXN8Q156A1 80 aa-3.05□□□□□ -2.9
VPS13C-205ENST00000558088 GLI2P10070 1586 aa-3.05□□□□□ -2.9
VPS13C-205ENST00000558088 TIAM1Q13009 1591 aa-3.06□□□□□ -2.9
VPS13C-205ENST00000558088 ABCC1P33527 1531 aa-3.08□□□□□ -2.9
VPS13C-205ENST00000558088 POLR2KP53803 58 aaKnown RBP-3.08□□□□□ -2.9
VPS13C-205ENST00000558088 USP34Q70CQ2 3546 aa-3.08□□□□□ -2.9
VPS13C-205ENST00000558088 C18orf32Q8TCD1 76 aa-3.09□□□□□ -2.9
VPS13C-205ENST00000558088 LINC00308Q8TCZ7 52 aa-3.09□□□□□ -2.9
VPS13C-205ENST00000558088 GNG13Q9P2W3 67 aa-3.09□□□□□ -2.9
VPS13C-205ENST00000558088 TMEM167BQ9NRX6 74 aa-3.1□□□□□ -2.91
VPS13C-205ENST00000558088 ANKARQ7Z5J8 1434 aa-3.11□□□□□ -2.91
VPS13C-205ENST00000558088 K7EMI3 77 aa-3.12□□□□□ -2.91
VPS13C-205ENST00000558088 MADDQ8WXG6 1647 aa-3.13□□□□□ -2.91
VPS13C-205ENST00000558088 HILPDAQ9Y5L2 63 aa-3.14□□□□□ -2.91
VPS13C-205ENST00000558088 NMES1Q9C002 83 aa-3.15□□□□□ -2.91
VPS13C-205ENST00000558088 M0R1W7 72 aa-3.16□□□□□ -2.92
VPS13C-205ENST00000558088 DCAF1Q9Y4B6 1507 aa-3.19□□□□□ -2.92
VPS13C-205ENST00000558088 CFAP74Q9C0B2 1584 aa-3.19□□□□□ -2.92
VPS13C-205ENST00000558088 LOC400499M0QZD8 3231 aa-3.2□□□□□ -2.92
VPS13C-205ENST00000558088 UNC80Q8N2C7 3258 aa-3.21□□□□□ -2.92
VPS13C-205ENST00000558088 DNAH12Q6ZR08 3092 aa-3.24□□□□□ -2.93
VPS13C-205ENST00000558088 LINC01549A6NIU2 74 aa-3.24□□□□□ -2.93
VPS13C-205ENST00000558088 DEFB131AP59861 70 aa-3.24□□□□□ -2.93
VPS13C-205ENST00000558088 SERF2P84101 59 aa-3.24□□□□□ -2.93
VPS13C-205ENST00000558088 VCANP13611 3396 aa-3.27□□□□□ -2.93
VPS13C-205ENST00000558088 EFCAB6Q5THR3 1501 aa-3.27□□□□□ -2.93
VPS13C-205ENST00000558088 PEG3Q9GZU2 1588 aa-3.28□□□□□ -2.93
VPS13C-205ENST00000558088 ALS2Q96Q42 1657 aa-3.29□□□□□ -2.94
VPS13C-205ENST00000558088 CENPFP49454 3210 aa-3.3□□□□□ -2.94
VPS13C-205ENST00000558088 NRXN3Q9Y4C0 1643 aa-3.31□□□□□ -2.94
VPS13C-205ENST00000558088 CCDC180Q9P1Z9 1646 aa-3.32□□□□□ -2.94
VPS13C-205ENST00000558088 ASPMQ8IZT6 3477 aa-3.34□□□□□ -2.94
VPS13C-205ENST00000558088 CD52P31358 61 aa-3.34□□□□□ -2.94
VPS13C-205ENST00000558088 DEFB133Q30KQ1 61 aa-3.34□□□□□ -2.94
VPS13C-205ENST00000558088 S100ZQ8WXG8 99 aa-3.34□□□□□ -2.94
VPS13C-205ENST00000558088 MROH2AA6NES4 1674 aa-3.34□□□□□ -2.94
VPS13C-205ENST00000558088 GNG2P59768 71 aa-3.36□□□□□ -2.95
VPS13C-205ENST00000558088 ABCA8O94911 1581 aa-3.37□□□□□ -2.95
VPS13C-205ENST00000558088 XIRP2A4UGR9 3374 aa-3.38□□□□□ -2.95
VPS13C-205ENST00000558088 H0YGX0 51 aa-3.39□□□□□ -2.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms