RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 LOC101927531A0A1B0GV80 90 aa6.48□□□□□ -1.37
SHMT2-235ENST00000557740 KRTAP10-5P60370 271 aa6.48□□□□□ -1.37
SHMT2-235ENST00000557740 KRTAP3-3Q9BYR6 98 aa6.48□□□□□ -1.37
SHMT2-235ENST00000557740 NEBP20929 6669 aa6.46□□□□□ -1.38
SHMT2-235ENST00000557740 CRIPTQ9P021 101 aa6.45□□□□□ -1.38
SHMT2-235ENST00000557740 LINC00643Q86TS7 51 aa6.44□□□□□ -1.38
SHMT2-235ENST00000557740 A0A087WVE0 104 aa6.43□□□□□ -1.38
SHMT2-235ENST00000557740 ATP5EP2Q5VTU8 51 aa6.43□□□□□ -1.38
SHMT2-235ENST00000557740 IMUPQ9GZP8 106 aa6.43□□□□□ -1.38
SHMT2-235ENST00000557740 NDUFC1O43677 76 aa6.38□□□□□ -1.39
SHMT2-235ENST00000557740 ATOX1O00244 68 aa6.37□□□□□ -1.39
SHMT2-235ENST00000557740 MUC12Q9UKN1 5478 aa6.37□□□□□ -1.39
SHMT2-235ENST00000557740 H0Y9P7 68 aa6.36□□□□□ -1.39
SHMT2-235ENST00000557740 UQCRQO14949 82 aa6.36□□□□□ -1.39
SHMT2-235ENST00000557740 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
SHMT2-235ENST00000557740 HIST1H4AP62805 103 aaKnown RBP6.36□□□□□ -1.39
SHMT2-235ENST00000557740 H0YAA0 97 aa6.33□□□□□ -1.4
SHMT2-235ENST00000557740 KRTAP5-9P26371 169 aa6.33□□□□□ -1.4
SHMT2-235ENST00000557740 KRTAP20-1Q3LI63 56 aa6.3□□□□□ -1.4
SHMT2-235ENST00000557740 A8MUN3 132 aa6.29□□□□□ -1.4
SHMT2-235ENST00000557740 KMT2DO14686 5537 aa6.27□□□□□ -1.41
SHMT2-235ENST00000557740 ADM2Q7Z4H4 148 aa6.27□□□□□ -1.41
SHMT2-235ENST00000557740 MDN1Q9NU22 5596 aa6.23□□□□□ -1.41
SHMT2-235ENST00000557740 LINC00208Q96KT6 92 aa6.23□□□□□ -1.41
SHMT2-235ENST00000557740 PRO2289Q9P1D8 64 aa6.23□□□□□ -1.41
SHMT2-235ENST00000557740 MP68P56378 58 aa6.2□□□□□ -1.42
SHMT2-235ENST00000557740 PLAC4Q8WY50 150 aa6.18□□□□□ -1.42
SHMT2-235ENST00000557740 SCGB1A1P11684 91 aa6.17□□□□□ -1.42
SHMT2-235ENST00000557740 MT1XP80297 61 aa6.15□□□□□ -1.42
SHMT2-235ENST00000557740 C20orf197Q8N268 126 aa6.15□□□□□ -1.42
SHMT2-235ENST00000557740 R4GN34 69 aa6.15□□□□□ -1.42
SHMT2-235ENST00000557740 SPRR2FQ96RM1 72 aa6.14□□□□□ -1.43
SHMT2-235ENST00000557740 OCR1Q9BZK8 76 aa6.14□□□□□ -1.43
SHMT2-235ENST00000557740 M0QZ58 72 aa6.1□□□□□ -1.43
SHMT2-235ENST00000557740 P0C880 135 aa6.09□□□□□ -1.43
SHMT2-235ENST00000557740 SPRR2EP22531 72 aa6.09□□□□□ -1.43
SHMT2-235ENST00000557740 SPRR2BP35325 72 aa6.09□□□□□ -1.43
SHMT2-235ENST00000557740 SPRR2AP35326 72 aa6.09□□□□□ -1.43
SHMT2-235ENST00000557740 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
SHMT2-235ENST00000557740 KRTAP8-1Q8IUC2 63 aa6.08□□□□□ -1.44
SHMT2-235ENST00000557740 SMIM20Q8N5G0 67 aa6.08□□□□□ -1.44
SHMT2-235ENST00000557740 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
SHMT2-235ENST00000557740 H3BPC8 53 aa6.07□□□□□ -1.44
SHMT2-235ENST00000557740 TRAV7A0A075B6U4 112 aa6.06□□□□□ -1.44
SHMT2-235ENST00000557740 DMAC1Q96GE9 116 aa6.06□□□□□ -1.44
SHMT2-235ENST00000557740 KRTAP12-2P59991 146 aa6.03□□□□□ -1.44
SHMT2-235ENST00000557740 LINC01554Q52M75 96 aa6.03□□□□□ -1.44
SHMT2-235ENST00000557740 SERP2Q8N6R1 65 aa6.02□□□□□ -1.45
SHMT2-235ENST00000557740 PCP4P48539 62 aa6.01□□□□□ -1.45
SHMT2-235ENST00000557740 ANAPC13Q9BS18 74 aa6.01□□□□□ -1.45
SHMT2-235ENST00000557740 KRTAP3-2Q9BYR7 98 aa5.99□□□□□ -1.45
SHMT2-235ENST00000557740 COX7CP15954 63 aa5.96□□□□□ -1.46
SHMT2-235ENST00000557740 LCE1AQ5T7P2 110 aa5.95□□□□□ -1.46
SHMT2-235ENST00000557740 SNURFQ9Y675 71 aa5.92□□□□□ -1.46
SHMT2-235ENST00000557740 KRTAP4-8A0A0G2JLE6 195 aa5.91□□□□□ -1.46
SHMT2-235ENST00000557740 KRTAP4-8Q9BYQ9 185 aa5.91□□□□□ -1.46
SHMT2-235ENST00000557740 SPRR2DP22532 72 aa5.89□□□□□ -1.47
SHMT2-235ENST00000557740 CCDC179H3BU77 68 aa5.88□□□□□ -1.47
SHMT2-235ENST00000557740 ACYP2P14621 99 aa5.88□□□□□ -1.47
SHMT2-235ENST00000557740 SPTSSBQ8NFR3 76 aa5.88□□□□□ -1.47
SHMT2-235ENST00000557740 KRTAP2-2Q9BYT5 123 aa5.87□□□□□ -1.47
SHMT2-235ENST00000557740 KRTAP2-1Q9BYU5 128 aa5.87□□□□□ -1.47
SHMT2-235ENST00000557740 KRTAP10-7P60409 375 aaPredicted RBP5.86□□□□□ -1.47
SHMT2-235ENST00000557740 KRTAP10-12P60413 245 aa5.83□□□□□ -1.48
SHMT2-235ENST00000557740 CHKB-CPT1BH3BT56 60 aa5.82□□□□□ -1.48
SHMT2-235ENST00000557740 CYSTM1Q9H1C7 97 aa5.82□□□□□ -1.48
SHMT2-235ENST00000557740 H7BZZ5 65 aa5.77□□□□□ -1.49
SHMT2-235ENST00000557740 SPANXA2-OT1Q8N9U9 137 aa5.74□□□□□ -1.49
SHMT2-235ENST00000557740 LCE3BQ5TA77 95 aa5.73□□□□□ -1.49
SHMT2-235ENST00000557740 TMEM258P61165 79 aa5.67□□□□□ -1.5
SHMT2-235ENST00000557740 ATP5EP56381 51 aaPredicted RBP5.65□□□□□ -1.5
SHMT2-235ENST00000557740 CAMK2N1Q7Z7J9 78 aa5.65□□□□□ -1.5
SHMT2-235ENST00000557740 KRTAP13-4Q3LI77 160 aa5.62□□□□□ -1.51
SHMT2-235ENST00000557740 COA5Q86WW8 74 aa5.58□□□□□ -1.52
SHMT2-235ENST00000557740 RPS28P62857 69 aaKnown RBP5.5□□□□□ -1.53
SHMT2-235ENST00000557740 A0A0D9SG42 100 aa5.49□□□□□ -1.53
SHMT2-235ENST00000557740 SEC61GP60059 68 aa5.49□□□□□ -1.53
SHMT2-235ENST00000557740 SERP1Q9Y6X1 66 aa5.49□□□□□ -1.53
SHMT2-235ENST00000557740 KRTAP19-7Q3SYF9 63 aa5.48□□□□□ -1.53
SHMT2-235ENST00000557740 LCE5AQ5TCM9 118 aa5.47□□□□□ -1.53
SHMT2-235ENST00000557740 MT1EP04732 61 aa5.46□□□□□ -1.54
SHMT2-235ENST00000557740 KRTAP19-3Q7Z4W3 81 aa5.45□□□□□ -1.54
SHMT2-235ENST00000557740 SPATA8Q6RVD6 105 aa5.41□□□□□ -1.54
SHMT2-235ENST00000557740 SPINT4Q6UDR6 99 aa5.41□□□□□ -1.54
SHMT2-235ENST00000557740 A0A1B0GU33 70 aa5.37□□□□□ -1.55
SHMT2-235ENST00000557740 KRTAP4-9Q9BYQ8 210 aa5.35□□□□□ -1.55
SHMT2-235ENST00000557740 KRTAP19-5Q3LI72 72 aa5.34□□□□□ -1.55
SHMT2-235ENST00000557740 GPR98Q8WXG9 6306 aa5.33□□□□□ -1.56
SHMT2-235ENST00000557740 KRTAP12-1P59990 96 aa5.33□□□□□ -1.56
SHMT2-235ENST00000557740 DSTQ03001 7570 aaKnown RBP5.32□□□□□ -1.56
SHMT2-235ENST00000557740 SMIM26A0A096LP01 95 aa5.31□□□□□ -1.56
SHMT2-235ENST00000557740 MT1GP13640 62 aa5.3□□□□□ -1.56
SHMT2-235ENST00000557740 PP632Q6XCG6 107 aa5.3□□□□□ -1.56
SHMT2-235ENST00000557740 LINC01558Q9Y6Z2 57 aa5.29□□□□□ -1.56
SHMT2-235ENST00000557740 A0A1B0GU69 56 aa5.28□□□□□ -1.56
SHMT2-235ENST00000557740 V9GYY9 64 aa5.25□□□□□ -1.57
SHMT2-235ENST00000557740 Q1T7F1 81 aa5.24□□□□□ -1.57
SHMT2-235ENST00000557740 PRR15LQ9BU68 103 aa5.24□□□□□ -1.57
SHMT2-235ENST00000557740 LCE1DQ5T752 114 aa5.22□□□□□ -1.57
SHMT2-235ENST00000557740 MT1MQ8N339 61 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms