RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 KRTAP9-3Q9BYQ3 159 aa8.2□□□□□ -1.1
SHMT2-225ENST00000556798 SNURFQ9Y675 71 aa8.14□□□□□ -1.11
SHMT2-225ENST00000556798 KRTAP9-6A0A140TA67 174 aa8.13□□□□□ -1.11
SHMT2-225ENST00000556798 SERP2Q8N6R1 65 aa8.13□□□□□ -1.11
SHMT2-225ENST00000556798 DMAC1Q96GE9 116 aa8.12□□□□□ -1.11
SHMT2-225ENST00000556798 LCE2BO14633 110 aa8.11□□□□□ -1.11
SHMT2-225ENST00000556798 CRCT1Q9UGL9 99 aa8.11□□□□□ -1.11
SHMT2-225ENST00000556798 NDUFC1O43677 76 aa8.1□□□□□ -1.11
SHMT2-225ENST00000556798 USH2AO75445 5202 aa8.09□□□□□ -1.11
SHMT2-225ENST00000556798 C20orf197Q8N268 126 aa8.09□□□□□ -1.11
SHMT2-225ENST00000556798 COX7CP15954 63 aa7.97□□□□□ -1.13
SHMT2-225ENST00000556798 ACYP2P14621 99 aa7.96□□□□□ -1.14
SHMT2-225ENST00000556798 SSPOA2VEC9 5147 aa7.95□□□□□ -1.14
SHMT2-225ENST00000556798 KRTAP19-1Q8IUB9 90 aa7.93□□□□□ -1.14
SHMT2-225ENST00000556798 H0YAA0 97 aa7.92□□□□□ -1.14
SHMT2-225ENST00000556798 SPANXA2-OT1Q8N9U9 137 aa7.92□□□□□ -1.14
SHMT2-225ENST00000556798 ADM2Q7Z4H4 148 aa7.91□□□□□ -1.14
SHMT2-225ENST00000556798 ANAPC13Q9BS18 74 aa7.88□□□□□ -1.15
SHMT2-225ENST00000556798 SPRR2GQ9BYE4 73 aa7.86□□□□□ -1.15
SHMT2-225ENST00000556798 CYSTM1Q9H1C7 97 aa7.86□□□□□ -1.15
SHMT2-225ENST00000556798 CHKB-CPT1BH3BT56 60 aa7.85□□□□□ -1.15
SHMT2-225ENST00000556798 CRIPTQ9P021 101 aa7.82□□□□□ -1.16
SHMT2-225ENST00000556798 H7BZZ5 65 aa7.8□□□□□ -1.16
SHMT2-225ENST00000556798 SPTSSBQ8NFR3 76 aa7.79□□□□□ -1.16
SHMT2-225ENST00000556798 P0C880 135 aa7.78□□□□□ -1.16
SHMT2-225ENST00000556798 KRTAP19-8Q3LI54 63 aa7.76□□□□□ -1.17
SHMT2-225ENST00000556798 MT1BP07438 61 aa7.75□□□□□ -1.17
SHMT2-225ENST00000556798 KRTAP3-2Q9BYR7 98 aa7.75□□□□□ -1.17
SHMT2-225ENST00000556798 CCDC179H3BU77 68 aa7.74□□□□□ -1.17
SHMT2-225ENST00000556798 KRTAP19-6Q3LI70 58 aa7.74□□□□□ -1.17
SHMT2-225ENST00000556798 Q5VV11 94 aa7.74□□□□□ -1.17
SHMT2-225ENST00000556798 COA5Q86WW8 74 aa7.72□□□□□ -1.17
SHMT2-225ENST00000556798 FCGBPQ9Y6R7 5405 aaPredicted RBP7.7□□□□□ -1.18
SHMT2-225ENST00000556798 R4GN34 69 aa7.65□□□□□ -1.18
SHMT2-225ENST00000556798 M0QZ58 72 aa7.64□□□□□ -1.19
SHMT2-225ENST00000556798 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.55□□□□□ -1.2
SHMT2-225ENST00000556798 LINC01554Q52M75 96 aa7.53□□□□□ -1.2
SHMT2-225ENST00000556798 A6NN06 94 aa7.52□□□□□ -1.21
SHMT2-225ENST00000556798 ATP5EP56381 51 aaPredicted RBP7.48□□□□□ -1.21
SHMT2-225ENST00000556798 KRTAP10-5P60370 271 aa7.48□□□□□ -1.21
SHMT2-225ENST00000556798 PLAC4Q8WY50 150 aa7.45□□□□□ -1.22
SHMT2-225ENST00000556798 SEC61GP60059 68 aa7.43□□□□□ -1.22
SHMT2-225ENST00000556798 TMEM258P61165 79 aa7.43□□□□□ -1.22
SHMT2-225ENST00000556798 MACF1Q9UPN3 7388 aaKnown RBP7.43□□□□□ -1.22
SHMT2-225ENST00000556798 SERP1Q9Y6X1 66 aa7.42□□□□□ -1.22
SHMT2-225ENST00000556798 KRTAP13-4Q3LI77 160 aa7.41□□□□□ -1.22
SHMT2-225ENST00000556798 KRTAP9-7A8MTY7 169 aa7.35□□□□□ -1.23
SHMT2-225ENST00000556798 MT1XP80297 61 aa7.34□□□□□ -1.23
SHMT2-225ENST00000556798 SYNE2Q8WXH0 6885 aaKnown RBP7.32□□□□□ -1.24
SHMT2-225ENST00000556798 A0A1B0GU69 56 aa7.31□□□□□ -1.24
SHMT2-225ENST00000556798 PRO2289Q9P1D8 64 aa7.3□□□□□ -1.24
SHMT2-225ENST00000556798 A0A1B0GU33 70 aa7.29□□□□□ -1.24
SHMT2-225ENST00000556798 SPATA8Q6RVD6 105 aa7.27□□□□□ -1.25
SHMT2-225ENST00000556798 A0A0D9SG42 100 aa7.22□□□□□ -1.25
SHMT2-225ENST00000556798 LINC01558Q9Y6Z2 57 aa7.18□□□□□ -1.26
SHMT2-225ENST00000556798 PRR15LQ9BU68 103 aa7.16□□□□□ -1.26
SHMT2-225ENST00000556798 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
SHMT2-225ENST00000556798 PCP4P48539 62 aa7.12□□□□□ -1.27
SHMT2-225ENST00000556798 CAMK2N1Q7Z7J9 78 aa7.1□□□□□ -1.27
SHMT2-225ENST00000556798 SPINT4Q6UDR6 99 aa7.08□□□□□ -1.28
SHMT2-225ENST00000556798 A8MU10 97 aa7.07□□□□□ -1.28
SHMT2-225ENST00000556798 SMIM26A0A096LP01 95 aa7.06□□□□□ -1.28
SHMT2-225ENST00000556798 KRTAP12-1P59990 96 aa7.06□□□□□ -1.28
SHMT2-225ENST00000556798 KRTAP12-2P59991 146 aa7.06□□□□□ -1.28
SHMT2-225ENST00000556798 KMT2DO14686 5537 aa7.05□□□□□ -1.28
SHMT2-225ENST00000556798 KRTAP10-7P60409 375 aaPredicted RBP7.03□□□□□ -1.28
SHMT2-225ENST00000556798 KRTAP10-12P60413 245 aa6.96□□□□□ -1.3
SHMT2-225ENST00000556798 KRTAP4-8A0A0G2JLE6 195 aa6.95□□□□□ -1.3
SHMT2-225ENST00000556798 KRTAP4-8Q9BYQ9 185 aa6.95□□□□□ -1.3
SHMT2-225ENST00000556798 KRTAP5-9P26371 169 aa6.94□□□□□ -1.3
SHMT2-225ENST00000556798 UQCR11O14957 56 aa6.93□□□□□ -1.3
SHMT2-225ENST00000556798 Q1T7F1 81 aa6.92□□□□□ -1.3
SHMT2-225ENST00000556798 KRTAP8-1Q8IUC2 63 aa6.92□□□□□ -1.3
SHMT2-225ENST00000556798 V9GYY9 64 aa6.92□□□□□ -1.3
SHMT2-225ENST00000556798 PSPHP1O15172 72 aa6.91□□□□□ -1.3
SHMT2-225ENST00000556798 MUC12Q9UKN1 5478 aa6.88□□□□□ -1.31
SHMT2-225ENST00000556798 SPRR2FQ96RM1 72 aa6.86□□□□□ -1.31
SHMT2-225ENST00000556798 NEBP20929 6669 aa6.83□□□□□ -1.32
SHMT2-225ENST00000556798 RPS28P62857 69 aaKnown RBP6.82□□□□□ -1.32
SHMT2-225ENST00000556798 MIR22HGQ0VDD5 57 aa6.82□□□□□ -1.32
SHMT2-225ENST00000556798 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
SHMT2-225ENST00000556798 MDN1Q9NU22 5596 aa6.71□□□□□ -1.33
SHMT2-225ENST00000556798 A6NED7 52 aa6.68□□□□□ -1.34
SHMT2-225ENST00000556798 SPRR2EP22531 72 aa6.68□□□□□ -1.34
SHMT2-225ENST00000556798 SPRR2BP35325 72 aa6.68□□□□□ -1.34
SHMT2-225ENST00000556798 SPRR2AP35326 72 aa6.68□□□□□ -1.34
SHMT2-225ENST00000556798 K7ERS5 55 aa6.61□□□□□ -1.35
SHMT2-225ENST00000556798 TNP1P09430 55 aa6.61□□□□□ -1.35
SHMT2-225ENST00000556798 LCE1AQ5T7P2 110 aa6.61□□□□□ -1.35
SHMT2-225ENST00000556798 KRTAP19-7Q3SYF9 63 aa6.56□□□□□ -1.36
SHMT2-225ENST00000556798 LCE3AQ5TA76 89 aa6.51□□□□□ -1.37
SHMT2-225ENST00000556798 KRTAP19-5Q3LI72 72 aa6.49□□□□□ -1.37
SHMT2-225ENST00000556798 MT1EP04732 61 aa6.48□□□□□ -1.37
SHMT2-225ENST00000556798 KRTAP20-1Q3LI63 56 aa6.48□□□□□ -1.37
SHMT2-225ENST00000556798 SPRR2DP22532 72 aa6.45□□□□□ -1.38
SHMT2-225ENST00000556798 SVIPQ8NHG7 77 aa6.44□□□□□ -1.38
SHMT2-225ENST00000556798 CDC42SE1Q9NRR8 79 aa6.43□□□□□ -1.38
SHMT2-225ENST00000556798 KRTAP25-1Q3LHN0 102 aa6.39□□□□□ -1.39
SHMT2-225ENST00000556798 KRTAP2-3P0C7H8 128 aa6.37□□□□□ -1.39
SHMT2-225ENST00000556798 KRTAP2-4Q9BYR9 128 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms