RNA–Protein interactions for RNA: ENST00000556170.5

NEK9-209, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 3,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-209ENST00000556170 KRTAP10-8P60410 259 aa7.75□□□□□ -1.17
NEK9-209ENST00000556170 H0YAA0 97 aa7.74□□□□□ -1.17
NEK9-209ENST00000556170 KRTAP10-4P60372 401 aaPredicted RBP7.72□□□□□ -1.17
NEK9-209ENST00000556170 C10orf95Q9H7T3 257 aa7.68□□□□□ -1.18
NEK9-209ENST00000556170 PKHD1P08F94 4074 aa7.66□□□□□ -1.18
NEK9-209ENST00000556170 MYCBP2O75592 4640 aa7.62□□□□□ -1.19
NEK9-209ENST00000556170 ALMS1Q8TCU4 4167 aa7.61□□□□□ -1.19
NEK9-209ENST00000556170 SEC61BP60468 96 aaKnown RBP7.6□□□□□ -1.19
NEK9-209ENST00000556170 P0C880 135 aa7.59□□□□□ -1.19
NEK9-209ENST00000556170 R4GN34 69 aa7.59□□□□□ -1.2
NEK9-209ENST00000556170 M0QZ58 72 aa7.56□□□□□ -1.2
NEK9-209ENST00000556170 KIAA1109Q2LD37 5005 aa7.54□□□□□ -1.2
NEK9-209ENST00000556170 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
NEK9-209ENST00000556170 LRP1Q07954 4544 aaKnown RBP7.54□□□□□ -1.2
NEK9-209ENST00000556170 APOBP04114 4563 aaKnown RBP7.51□□□□□ -1.21
NEK9-209ENST00000556170 FAT2Q9NYQ8 4349 aa7.48□□□□□ -1.21
NEK9-209ENST00000556170 KMT2CQ8NEZ4 4911 aaKnown RBP7.47□□□□□ -1.21
NEK9-209ENST00000556170 MT1HL1P0DM35 61 aa7.46□□□□□ -1.21
NEK9-209ENST00000556170 TPRXLQ17RH7 258 aa7.45□□□□□ -1.22
NEK9-209ENST00000556170 RYR1P21817 5038 aa7.43□□□□□ -1.22
NEK9-209ENST00000556170 FAT3Q8TDW7 4589 aa7.42□□□□□ -1.22
NEK9-209ENST00000556170 CAMK2N1Q7Z7J9 78 aa7.42□□□□□ -1.22
NEK9-209ENST00000556170 KRTAP4-5Q9BYR2 181 aa7.41□□□□□ -1.22
NEK9-209ENST00000556170 PKD1P98161 4303 aa7.4□□□□□ -1.22
NEK9-209ENST00000556170 RYR3Q15413 4870 aa7.39□□□□□ -1.23
NEK9-209ENST00000556170 KRTAP13-4Q3LI77 160 aa7.37□□□□□ -1.23
NEK9-209ENST00000556170 M0R2T5 61 aa7.35□□□□□ -1.23
NEK9-209ENST00000556170 KRTAP10-6P60371 365 aaPredicted RBP7.35□□□□□ -1.23
NEK9-209ENST00000556170 RYR2Q92736 4967 aa7.34□□□□□ -1.23
NEK9-209ENST00000556170 KRTAP3-3Q9BYR6 98 aa7.34□□□□□ -1.23
NEK9-209ENST00000556170 KRTAP17-1Q9BYP8 105 aa7.29□□□□□ -1.24
NEK9-209ENST00000556170 KRTAP12-2P59991 146 aa7.25□□□□□ -1.25
NEK9-209ENST00000556170 KRTAP3-2Q9BYR7 98 aa7.23□□□□□ -1.25
NEK9-209ENST00000556170 PLAC4Q8WY50 150 aa7.21□□□□□ -1.26
NEK9-209ENST00000556170 LRP2P98164 4655 aa7.14□□□□□ -1.27
NEK9-209ENST00000556170 KRTAP12-1P59990 96 aa7.13□□□□□ -1.27
NEK9-209ENST00000556170 KRTAP15-1Q3LI76 137 aa7.13□□□□□ -1.27
NEK9-209ENST00000556170 HSPG2P98160 4391 aa7.08□□□□□ -1.28
NEK9-209ENST00000556170 EPPK1P58107 5090 aaKnown RBP6.98□□□□□ -1.29
NEK9-209ENST00000556170 PKHD1L1Q86WI1 4243 aa6.96□□□□□ -1.3
NEK9-209ENST00000556170 LPAP08519 4548 aa6.94□□□□□ -1.3
NEK9-209ENST00000556170 LORP23490 312 aaPredicted RBP6.93□□□□□ -1.3
NEK9-209ENST00000556170 KRTAP4-1Q9BYQ7 146 aa6.93□□□□□ -1.3
NEK9-209ENST00000556170 HERC2O95714 4834 aa6.91□□□□□ -1.3
NEK9-209ENST00000556170 TNXBP22105 4242 aa6.84□□□□□ -1.31
NEK9-209ENST00000556170 TNP1P09430 55 aa6.8□□□□□ -1.32
NEK9-209ENST00000556170 ABCA13Q86UQ4 5058 aa6.8□□□□□ -1.32
NEK9-209ENST00000556170 KRTAP10-10P60014 251 aa6.79□□□□□ -1.32
NEK9-209ENST00000556170 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
NEK9-209ENST00000556170 MUC2Q02817 5179 aa6.66□□□□□ -1.34
NEK9-209ENST00000556170 HERC1Q15751 4861 aa6.52□□□□□ -1.37
NEK9-209ENST00000556170 BIRC6Q9NR09 4857 aa6.48□□□□□ -1.37
NEK9-209ENST00000556170 RNF213Q63HN8 5207 aa6.44□□□□□ -1.38
NEK9-209ENST00000556170 FAT4Q6V0I7 4981 aa6.4□□□□□ -1.38
NEK9-209ENST00000556170 PCLOQ9Y6V0 5065 aa6.33□□□□□ -1.4
NEK9-209ENST00000556170 PRO2289Q9P1D8 64 aa6.32□□□□□ -1.4
NEK9-209ENST00000556170 MT1HP80294 61 aa6.3□□□□□ -1.4
NEK9-209ENST00000556170 KRTAP19-2Q3LHN2 52 aa6.3□□□□□ -1.4
NEK9-209ENST00000556170 UBR4Q5T4S7 5183 aa6.25□□□□□ -1.41
NEK9-209ENST00000556170 MUC17Q685J3 4493 aa6.24□□□□□ -1.41
NEK9-209ENST00000556170 MT2AP02795 61 aa6.22□□□□□ -1.41
NEK9-209ENST00000556170 MT1FP04733 61 aa6.21□□□□□ -1.41
NEK9-209ENST00000556170 LCE2CQ5TA81 110 aa6.18□□□□□ -1.42
NEK9-209ENST00000556170 LCE3AQ5TA76 89 aa6.17□□□□□ -1.42
NEK9-209ENST00000556170 SPRR2GQ9BYE4 73 aa6.16□□□□□ -1.42
NEK9-209ENST00000556170 KRTAP19-1Q8IUB9 90 aa6.15□□□□□ -1.42
NEK9-209ENST00000556170 FLGP20930 4061 aaPredicted RBP6.15□□□□□ -1.42
NEK9-209ENST00000556170 HMCN2Q8NDA2 5059 aa6.15□□□□□ -1.43
NEK9-209ENST00000556170 INE1O15225 51 aa6.15□□□□□ -1.43
NEK9-209ENST00000556170 KRTAP10-12P60413 245 aa6.06□□□□□ -1.44
NEK9-209ENST00000556170 KRTAP9-8Q9BYQ0 159 aa5.98□□□□□ -1.45
NEK9-209ENST00000556170 KRTAP12-3P60328 96 aa5.97□□□□□ -1.45
NEK9-209ENST00000556170 KRTAP23-1A1A580 65 aa5.95□□□□□ -1.46
NEK9-209ENST00000556170 FSIP2Q5CZC0 6907 aa5.88□□□□□ -1.47
NEK9-209ENST00000556170 MT1BP07438 61 aa5.84□□□□□ -1.47
NEK9-209ENST00000556170 KRTAP19-8Q3LI54 63 aa5.82□□□□□ -1.48
NEK9-209ENST00000556170 MT1XP80297 61 aa5.8□□□□□ -1.48
NEK9-209ENST00000556170 KRTAP10-7P60409 375 aaPredicted RBP5.8□□□□□ -1.48
NEK9-209ENST00000556170 KRTAP10-5P60370 271 aa5.78□□□□□ -1.48
NEK9-209ENST00000556170 KRTAP8-1Q8IUC2 63 aa5.73□□□□□ -1.49
NEK9-209ENST00000556170 KRTAP9-3Q9BYQ3 159 aa5.73□□□□□ -1.49
NEK9-209ENST00000556170 USH2AO75445 5202 aa5.7□□□□□ -1.5
NEK9-209ENST00000556170 KRTAP19-5Q3LI72 72 aa5.64□□□□□ -1.51
NEK9-209ENST00000556170 LCE2BO14633 110 aa5.61□□□□□ -1.51
NEK9-209ENST00000556170 KRTAP4-8A0A0G2JLE6 195 aa5.6□□□□□ -1.51
NEK9-209ENST00000556170 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
NEK9-209ENST00000556170 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
NEK9-209ENST00000556170 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
NEK9-209ENST00000556170 KMT2DO14686 5537 aa5.49□□□□□ -1.53
NEK9-209ENST00000556170 LCE3CQ5T5A8 94 aa5.42□□□□□ -1.54
NEK9-209ENST00000556170 OBSCNQ5VST9 7968 aa5.35□□□□□ -1.55
NEK9-209ENST00000556170 LCE2AQ5TA79 106 aaPredicted RBP5.35□□□□□ -1.55
NEK9-209ENST00000556170 KRTAP4-7Q9BYR0 210 aa5.33□□□□□ -1.56
NEK9-209ENST00000556170 DSTQ03001 7570 aaKnown RBP5.2□□□□□ -1.58
NEK9-209ENST00000556170 SPRR2FQ96RM1 72 aa5.14□□□□□ -1.59
NEK9-209ENST00000556170 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
NEK9-209ENST00000556170 KRTAP19-7Q3SYF9 63 aa5.11□□□□□ -1.59
NEK9-209ENST00000556170 FCGBPQ9Y6R7 5405 aaPredicted RBP5.1□□□□□ -1.59
NEK9-209ENST00000556170 MT1LQ93083 61 aa5.07□□□□□ -1.6
NEK9-209ENST00000556170 MT1EP04732 61 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms