RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 RPS29P62273 56 aaKnown RBP0.39□□□□□ -2.35
VRK1-203ENST00000555067 LINC01556Q5JQF7 62 aa0.39□□□□□ -2.35
VRK1-203ENST00000555067 TRIOO75962 3097 aa0.39□□□□□ -2.35
VRK1-203ENST00000555067 PKD1P98161 4303 aa0.38□□□□□ -2.35
VRK1-203ENST00000555067 Q9Y3F1 56 aa0.38□□□□□ -2.35
VRK1-203ENST00000555067 FLNAP21333 2647 aaKnown RBP0.38□□□□□ -2.35
VRK1-203ENST00000555067 SONP18583 2426 aaKnown RBP0.38□□□□□ -2.35
VRK1-203ENST00000555067 DNAH3Q8TD57 4116 aa0.38□□□□□ -2.35
VRK1-203ENST00000555067 ACACBO00763 2458 aa0.38□□□□□ -2.35
VRK1-203ENST00000555067 LRP1BQ9NZR2 4599 aa0.37□□□□□ -2.35
VRK1-203ENST00000555067 DYNC2H1Q8NCM8 4307 aaKnown RBP0.37□□□□□ -2.35
VRK1-203ENST00000555067 COX14Q96I36 57 aa0.37□□□□□ -2.35
VRK1-203ENST00000555067 DMXL1Q9Y485 3027 aa0.37□□□□□ -2.35
VRK1-203ENST00000555067 DNAH8Q96JB1 4490 aa0.36□□□□□ -2.35
VRK1-203ENST00000555067 CUBNO60494 3623 aa0.36□□□□□ -2.35
VRK1-203ENST00000555067 COL7A1Q02388 2944 aa0.36□□□□□ -2.35
VRK1-203ENST00000555067 ZZEF1O43149 2961 aa0.36□□□□□ -2.35
VRK1-203ENST00000555067 FRYQ5TBA9 3013 aa0.35□□□□□ -2.35
VRK1-203ENST00000555067 ANKHD1Q8IWZ3 2542 aaKnown RBP0.35□□□□□ -2.35
VRK1-203ENST00000555067 COL6A3P12111 3177 aa0.35□□□□□ -2.35
VRK1-203ENST00000555067 CELSR3Q9NYQ7 3312 aa0.35□□□□□ -2.35
VRK1-203ENST00000555067 USP9YO00507 2555 aaPredicted RBP0.35□□□□□ -2.35
VRK1-203ENST00000555067 TACC2O95359 2948 aa0.35□□□□□ -2.35
VRK1-203ENST00000555067 ITPR3Q14573 2671 aa0.35□□□□□ -2.35
VRK1-203ENST00000555067 DNAH1Q9P2D7 4330 aa0.34□□□□□ -2.35
VRK1-203ENST00000555067 FAM186AA6NE01 2351 aa0.34□□□□□ -2.36
VRK1-203ENST00000555067 ANKRD11Q6UB99 2663 aaPredicted RBP0.33□□□□□ -2.36
VRK1-203ENST00000555067 COL12A1Q99715 3063 aa0.33□□□□□ -2.36
VRK1-203ENST00000555067 NBPF19A0A087WUL8 3843 aa0.33□□□□□ -2.36
VRK1-203ENST00000555067 HTN3P15516 51 aa0.33□□□□□ -2.36
VRK1-203ENST00000555067 DNAH6Q9C0G6 4158 aa0.33□□□□□ -2.36
VRK1-203ENST00000555067 ZANQ9Y493 2812 aa0.32□□□□□ -2.36
VRK1-203ENST00000555067 RIF1Q5UIP0 2472 aaKnown RBP0.32□□□□□ -2.36
VRK1-203ENST00000555067 APOBP04114 4563 aaKnown RBP0.32□□□□□ -2.36
VRK1-203ENST00000555067 DNAH7Q8WXX0 4024 aa0.32□□□□□ -2.36
VRK1-203ENST00000555067 UTP20O75691 2785 aaKnown RBP0.32□□□□□ -2.36
VRK1-203ENST00000555067 ZFHX4Q86UP3 3567 aa0.32□□□□□ -2.36
VRK1-203ENST00000555067 MGAQ8IWI9 3026 aa0.32□□□□□ -2.36
VRK1-203ENST00000555067 LRRK2Q5S007 2527 aa0.31□□□□□ -2.36
VRK1-203ENST00000555067 DEFB4AO15263 64 aa0.31□□□□□ -2.36
VRK1-203ENST00000555067 DNAH10Q8IVF4 4471 aa0.31□□□□□ -2.36
VRK1-203ENST00000555067 DNAH9Q9NYC9 4486 aa0.31□□□□□ -2.36
VRK1-203ENST00000555067 EPG5Q9HCE0 2579 aa0.31□□□□□ -2.36
VRK1-203ENST00000555067 RELNP78509 3460 aa0.3□□□□□ -2.36
VRK1-203ENST00000555067 FAT3Q8TDW7 4589 aa0.3□□□□□ -2.36
VRK1-203ENST00000555067 AKAP9Q99996 3911 aa0.3□□□□□ -2.36
VRK1-203ENST00000555067 NBEAL2Q6ZNJ1 2754 aa0.3□□□□□ -2.36
VRK1-203ENST00000555067 SPENQ96T58 3664 aaKnown RBP0.29□□□□□ -2.36
VRK1-203ENST00000555067 SPG11Q96JI7 2443 aa0.29□□□□□ -2.36
VRK1-203ENST00000555067 LAMA1P25391 3075 aa0.29□□□□□ -2.36
VRK1-203ENST00000555067 PKHD1P08F94 4074 aa0.29□□□□□ -2.36
VRK1-203ENST00000555067 FLGP20930 4061 aaPredicted RBP0.29□□□□□ -2.36
VRK1-203ENST00000555067 TGP01266 2768 aa0.29□□□□□ -2.36
VRK1-203ENST00000555067 LAMA5O15230 3695 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 FAT1Q14517 4588 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 LRP2P98164 4655 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 TLN2Q9Y4G6 2542 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 CFAP54Q96N23 3096 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 HIVEP1P15822 2718 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 CMYA5Q8N3K9 4069 aa0.28□□□□□ -2.36
VRK1-203ENST00000555067 TEP1Q99973 2627 aaKnown RBP0.28□□□□□ -2.37
VRK1-203ENST00000555067 KALRNO60229 2985 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 NIPBLQ6KC79 2804 aaeCLIP0.27□□□□□ -2.37
VRK1-203ENST00000555067 MT1EP04732 61 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 MT1HP80294 61 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 HTTP42858 3142 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 CEP250Q9BV73 2442 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 FASNP49327 2511 aaKnown RBP0.27□□□□□ -2.37
VRK1-203ENST00000555067 PLECQ15149 4684 aaKnown RBP0.27□□□□□ -2.37
VRK1-203ENST00000555067 FRYLO94915 3013 aa0.27□□□□□ -2.37
VRK1-203ENST00000555067 DSTQ03001 7570 aaKnown RBP0.26□□□□□ -2.37
VRK1-203ENST00000555067 MGAM2Q2M2H8 2515 aa0.26□□□□□ -2.37
VRK1-203ENST00000555067 SVEP1Q4LDE5 3571 aa0.26□□□□□ -2.37
VRK1-203ENST00000555067 LAMA3Q16787 3333 aa0.26□□□□□ -2.37
VRK1-203ENST00000555067 CSMD1Q96PZ7 3565 aa0.26□□□□□ -2.37
VRK1-203ENST00000555067 DMXL2Q8TDJ6 3036 aa0.25□□□□□ -2.37
VRK1-203ENST00000555067 NBEAQ8NFP9 2946 aa0.25□□□□□ -2.37
VRK1-203ENST00000555067 MYO18BQ8IUG5 2567 aa0.25□□□□□ -2.37
VRK1-203ENST00000555067 HERC1Q15751 4861 aa0.25□□□□□ -2.37
VRK1-203ENST00000555067 WDR87Q6ZQQ6 2873 aa0.24□□□□□ -2.37
VRK1-203ENST00000555067 MAP1AP78559 2803 aaPredicted RBP0.24□□□□□ -2.37
VRK1-203ENST00000555067 MXRA5Q9NR99 2828 aa0.24□□□□□ -2.37
VRK1-203ENST00000555067 MT1LQ93083 61 aa0.24□□□□□ -2.37
VRK1-203ENST00000555067 ITPR1Q14643 2758 aa0.23□□□□□ -2.37
VRK1-203ENST00000555067 USP9XQ93008 2570 aaPredicted RBP0.23□□□□□ -2.37
VRK1-203ENST00000555067 SPTBN5Q9NRC6 3674 aaKnown RBP0.22□□□□□ -2.37
VRK1-203ENST00000555067 DYNC1H1Q14204 4646 aaKnown RBP0.22□□□□□ -2.38
VRK1-203ENST00000555067 DNAH17Q9UFH2 4485 aa0.21□□□□□ -2.38
VRK1-203ENST00000555067 ATMQ13315 3056 aa0.21□□□□□ -2.38
VRK1-203ENST00000555067 C5orf42Q9H799 3197 aa0.2□□□□□ -2.38
VRK1-203ENST00000555067 MT1XP80297 61 aa0.2□□□□□ -2.38
VRK1-203ENST00000555067 SPRR2GQ9BYE4 73 aa0.2□□□□□ -2.38
VRK1-203ENST00000555067 DNAH12Q6ZR08 3092 aa0.2□□□□□ -2.38
VRK1-203ENST00000555067 SZT2Q5T011 3432 aa0.2□□□□□ -2.38
VRK1-203ENST00000555067 PRUNE2Q8WUY3 3088 aa0.19□□□□□ -2.38
VRK1-203ENST00000555067 TEX15Q9BXT5 2789 aa0.19□□□□□ -2.38
VRK1-203ENST00000555067 DNAH5Q8TE73 4624 aa0.19□□□□□ -2.38
VRK1-203ENST00000555067 ADGRG4Q8IZF6 3080 aa0.19□□□□□ -2.38
VRK1-203ENST00000555067 LRBAP50851 2863 aa0.19□□□□□ -2.38
VRK1-203ENST00000555067 NBEAL1Q6ZS30 2694 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms