RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 KRTAP9-7A8MTY7 169 aa6.09□□□□□ -1.43
SHMT2-216ENST00000554975 LCE2CQ5TA81 110 aa6.09□□□□□ -1.43
SHMT2-216ENST00000554975 Q75L30 129 aa6.09□□□□□ -1.43
SHMT2-216ENST00000554975 A8MUN3 132 aa6.08□□□□□ -1.44
SHMT2-216ENST00000554975 Q5VV11 94 aa6.08□□□□□ -1.44
SHMT2-216ENST00000554975 KRTAP3-3Q9BYR6 98 aa6.06□□□□□ -1.44
SHMT2-216ENST00000554975 KRTAP3-2Q9BYR7 98 aa6.06□□□□□ -1.44
SHMT2-216ENST00000554975 IGKV2D-30A0A075B6S6 120 aa6.05□□□□□ -1.44
SHMT2-216ENST00000554975 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.03□□□□□ -1.44
SHMT2-216ENST00000554975 KRTAP19-2Q3LHN2 52 aa6.03□□□□□ -1.44
SHMT2-216ENST00000554975 C20orf166-AS1Q96NR2 134 aa6.03□□□□□ -1.44
SHMT2-216ENST00000554975 A8MUU9 505 aa6.02□□□□□ -1.45
SHMT2-216ENST00000554975 MT1HP80294 61 aa6.02□□□□□ -1.45
SHMT2-216ENST00000554975 A6NED7 52 aa6□□□□□ -1.45
SHMT2-216ENST00000554975 LORP23490 312 aaPredicted RBP6□□□□□ -1.45
SHMT2-216ENST00000554975 SPTSSBQ8NFR3 76 aa5.99□□□□□ -1.45
SHMT2-216ENST00000554975 KRTAP10-6P60371 365 aaPredicted RBP5.96□□□□□ -1.46
SHMT2-216ENST00000554975 CDC42SE1Q9NRR8 79 aa5.96□□□□□ -1.46
SHMT2-216ENST00000554975 SEC61BP60468 96 aaKnown RBP5.95□□□□□ -1.46
SHMT2-216ENST00000554975 A0A1B0GU69 56 aa5.93□□□□□ -1.46
SHMT2-216ENST00000554975 C9orf92A6NGG3 77 aa5.92□□□□□ -1.46
SHMT2-216ENST00000554975 ATP11AUNQ6ZP68 121 aa5.91□□□□□ -1.46
SHMT2-216ENST00000554975 FLGP20930 4061 aaPredicted RBP5.89□□□□□ -1.47
SHMT2-216ENST00000554975 XP32Q5T750 250 aa5.88□□□□□ -1.47
SHMT2-216ENST00000554975 SSPOA2VEC9 5147 aa5.86□□□□□ -1.47
SHMT2-216ENST00000554975 SEC61GP60059 68 aa5.86□□□□□ -1.47
SHMT2-216ENST00000554975 SPINK7P58062 85 aa5.83□□□□□ -1.48
SHMT2-216ENST00000554975 LCA10Q71F78 164 aa5.83□□□□□ -1.48
SHMT2-216ENST00000554975 UQCR11O14957 56 aa5.82□□□□□ -1.48
SHMT2-216ENST00000554975 PMAIP1Q13794 54 aa5.82□□□□□ -1.48
SHMT2-216ENST00000554975 RPL37P61927 97 aaKnown RBP5.81□□□□□ -1.48
SHMT2-216ENST00000554975 M0R2T5 61 aa5.8□□□□□ -1.48
SHMT2-216ENST00000554975 COX6B2Q6YFQ2 88 aa5.8□□□□□ -1.48
SHMT2-216ENST00000554975 USH2AO75445 5202 aa5.79□□□□□ -1.48
SHMT2-216ENST00000554975 FCGBPQ9Y6R7 5405 aaPredicted RBP5.77□□□□□ -1.49
SHMT2-216ENST00000554975 SPATA8Q6RVD6 105 aa5.76□□□□□ -1.49
SHMT2-216ENST00000554975 MIR22HGQ0VDD5 57 aa5.75□□□□□ -1.49
SHMT2-216ENST00000554975 KTN1-AS1Q86SY8 53 aa5.74□□□□□ -1.49
SHMT2-216ENST00000554975 A6NN06 94 aa5.73□□□□□ -1.49
SHMT2-216ENST00000554975 A8MU10 97 aa5.72□□□□□ -1.49
SHMT2-216ENST00000554975 KRTAP3-1Q9BYR8 98 aa5.67□□□□□ -1.5
SHMT2-216ENST00000554975 MACF1Q9UPN3 7388 aaKnown RBP5.67□□□□□ -1.5
SHMT2-216ENST00000554975 SYNE2Q8WXH0 6885 aaKnown RBP5.66□□□□□ -1.5
SHMT2-216ENST00000554975 KRTAP19-1Q8IUB9 90 aa5.66□□□□□ -1.5
SHMT2-216ENST00000554975 KRTAP9-8Q9BYQ0 159 aa5.63□□□□□ -1.51
SHMT2-216ENST00000554975 A0A1B0GU33 70 aa5.61□□□□□ -1.51
SHMT2-216ENST00000554975 H1FX-AS1Q4G0G2 97 aa5.61□□□□□ -1.51
SHMT2-216ENST00000554975 S4R3F8 94 aa5.61□□□□□ -1.51
SHMT2-216ENST00000554975 LCE2BO14633 110 aa5.58□□□□□ -1.52
SHMT2-216ENST00000554975 K7ERS5 55 aa5.57□□□□□ -1.52
SHMT2-216ENST00000554975 RBM12B-AS1Q9P1G2 102 aa5.57□□□□□ -1.52
SHMT2-216ENST00000554975 H0YAA0 97 aa5.53□□□□□ -1.52
SHMT2-216ENST00000554975 MT2AP02795 61 aa5.5□□□□□ -1.53
SHMT2-216ENST00000554975 MT1FP04733 61 aa5.47□□□□□ -1.53
SHMT2-216ENST00000554975 KRTAP9-3Q9BYQ3 159 aa5.46□□□□□ -1.54
SHMT2-216ENST00000554975 KRTAP6-3Q3LI67 103 aa5.45□□□□□ -1.54
SHMT2-216ENST00000554975 CSAG1Q6PB30 78 aa5.44□□□□□ -1.54
SHMT2-216ENST00000554975 KRTAP19-6Q3LI70 58 aa5.41□□□□□ -1.54
SHMT2-216ENST00000554975 KRTAP10-10P60014 251 aa5.36□□□□□ -1.55
SHMT2-216ENST00000554975 M0QZ58 72 aa5.35□□□□□ -1.55
SHMT2-216ENST00000554975 NEBP20929 6669 aa5.34□□□□□ -1.55
SHMT2-216ENST00000554975 ADM2Q7Z4H4 148 aa5.34□□□□□ -1.55
SHMT2-216ENST00000554975 PRAC1Q96KF2 57 aa5.33□□□□□ -1.56
SHMT2-216ENST00000554975 P0C880 135 aa5.3□□□□□ -1.56
SHMT2-216ENST00000554975 ROMO1P60602 79 aa5.28□□□□□ -1.56
SHMT2-216ENST00000554975 KRTAP20-1Q3LI63 56 aa5.28□□□□□ -1.56
SHMT2-216ENST00000554975 MUC12Q9UKN1 5478 aa5.27□□□□□ -1.57
SHMT2-216ENST00000554975 KRTAP13-4Q3LI77 160 aa5.27□□□□□ -1.57
SHMT2-216ENST00000554975 LINC01554Q52M75 96 aa5.26□□□□□ -1.57
SHMT2-216ENST00000554975 A0A0D9SG42 100 aa5.25□□□□□ -1.57
SHMT2-216ENST00000554975 KRTAP25-1Q3LHN0 102 aa5.23□□□□□ -1.57
SHMT2-216ENST00000554975 R4GN34 69 aa5.18□□□□□ -1.58
SHMT2-216ENST00000554975 KRTAP12-1P59990 96 aa5.16□□□□□ -1.58
SHMT2-216ENST00000554975 SPINT4Q6UDR6 99 aa5.14□□□□□ -1.59
SHMT2-216ENST00000554975 KRTAP12-2P59991 146 aa5.12□□□□□ -1.59
SHMT2-216ENST00000554975 CRIPTQ9P021 101 aa5.09□□□□□ -1.59
SHMT2-216ENST00000554975 MDN1Q9NU22 5596 aa5.03□□□□□ -1.6
SHMT2-216ENST00000554975 KMT2DO14686 5537 aa5.02□□□□□ -1.61
SHMT2-216ENST00000554975 KRTAP5-9P26371 169 aa5.01□□□□□ -1.61
SHMT2-216ENST00000554975 KRTAP2-3P0C7H8 128 aa4.99□□□□□ -1.61
SHMT2-216ENST00000554975 KRTAP2-4Q9BYR9 128 aa4.99□□□□□ -1.61
SHMT2-216ENST00000554975 CAMK2N1Q7Z7J9 78 aa4.91□□□□□ -1.62
SHMT2-216ENST00000554975 MT1BP07438 61 aa4.89□□□□□ -1.63
SHMT2-216ENST00000554975 C10orf95Q9H7T3 257 aa4.88□□□□□ -1.63
SHMT2-216ENST00000554975 PP632Q6XCG6 107 aa4.87□□□□□ -1.63
SHMT2-216ENST00000554975 KRTAP10-5P60370 271 aa4.84□□□□□ -1.63
SHMT2-216ENST00000554975 H3BS24 57 aa4.83□□□□□ -1.64
SHMT2-216ENST00000554975 SPRR2EP22531 72 aa4.8□□□□□ -1.64
SHMT2-216ENST00000554975 SPRR2BP35325 72 aa4.8□□□□□ -1.64
SHMT2-216ENST00000554975 SPRR2AP35326 72 aa4.8□□□□□ -1.64
SHMT2-216ENST00000554975 KRTAP2-2Q9BYT5 123 aa4.8□□□□□ -1.64
SHMT2-216ENST00000554975 KRTAP2-1Q9BYU5 128 aa4.8□□□□□ -1.64
SHMT2-216ENST00000554975 SPRR2GQ9BYE4 73 aa4.79□□□□□ -1.64
SHMT2-216ENST00000554975 KRTAP19-8Q3LI54 63 aa4.77□□□□□ -1.65
SHMT2-216ENST00000554975 PLAC4Q8WY50 150 aa4.76□□□□□ -1.65
SHMT2-216ENST00000554975 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
SHMT2-216ENST00000554975 TNP1P09430 55 aa4.75□□□□□ -1.65
SHMT2-216ENST00000554975 SPRR2FQ96RM1 72 aa4.75□□□□□ -1.65
SHMT2-216ENST00000554975 LCE1AQ5T7P2 110 aa4.69□□□□□ -1.66
SHMT2-216ENST00000554975 KRTAP15-1Q3LI76 137 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms