RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RPS29P62273 56 aaKnown RBP6.43□□□□□ -1.38
SHMT2-212ENST00000554467 KRTAP10-8P60410 259 aa6.38□□□□□ -1.39
SHMT2-212ENST00000554467 KRTAP4-5Q9BYR2 181 aa6.33□□□□□ -1.4
SHMT2-212ENST00000554467 MT1HL1P0DM35 61 aa6.29□□□□□ -1.4
SHMT2-212ENST00000554467 ROMO1P60602 79 aa6.29□□□□□ -1.4
SHMT2-212ENST00000554467 A8MUU9 505 aa6.28□□□□□ -1.4
SHMT2-212ENST00000554467 C20orf166-AS1Q96NR2 134 aa6.28□□□□□ -1.4
SHMT2-212ENST00000554467 ABCA13Q86UQ4 5058 aa6.27□□□□□ -1.41
SHMT2-212ENST00000554467 KRTAP25-1Q3LHN0 102 aa6.27□□□□□ -1.41
SHMT2-212ENST00000554467 H0YAA0 97 aa6.24□□□□□ -1.41
SHMT2-212ENST00000554467 LPAP08519 4548 aa6.23□□□□□ -1.41
SHMT2-212ENST00000554467 P0C880 135 aa6.22□□□□□ -1.41
SHMT2-212ENST00000554467 LRP2P98164 4655 aa6.21□□□□□ -1.42
SHMT2-212ENST00000554467 HERC2O95714 4834 aa6.19□□□□□ -1.42
SHMT2-212ENST00000554467 CRIPTQ9P021 101 aa6.18□□□□□ -1.42
SHMT2-212ENST00000554467 XP32Q5T750 250 aa6.17□□□□□ -1.42
SHMT2-212ENST00000554467 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
SHMT2-212ENST00000554467 RPL37P61927 97 aaKnown RBP6.11□□□□□ -1.43
SHMT2-212ENST00000554467 BIRC6Q9NR09 4857 aa6.09□□□□□ -1.43
SHMT2-212ENST00000554467 A0A1B0GU33 70 aa6.04□□□□□ -1.44
SHMT2-212ENST00000554467 J3QL48 77 aa6.04□□□□□ -1.44
SHMT2-212ENST00000554467 H1FX-AS1Q4G0G2 97 aa6.01□□□□□ -1.45
SHMT2-212ENST00000554467 COX6B2Q6YFQ2 88 aa6.01□□□□□ -1.45
SHMT2-212ENST00000554467 HERC1Q15751 4861 aa6□□□□□ -1.45
SHMT2-212ENST00000554467 TPRXLQ17RH7 258 aa5.99□□□□□ -1.45
SHMT2-212ENST00000554467 PCLOQ9Y6V0 5065 aa5.98□□□□□ -1.45
SHMT2-212ENST00000554467 A0A0D9SG42 100 aa5.92□□□□□ -1.46
SHMT2-212ENST00000554467 MUC2Q02817 5179 aa5.91□□□□□ -1.46
SHMT2-212ENST00000554467 NDUFAF8A1L188 74 aa5.88□□□□□ -1.47
SHMT2-212ENST00000554467 KRTAP15-1Q3LI76 137 aa5.88□□□□□ -1.47
SHMT2-212ENST00000554467 SPINT4Q6UDR6 99 aa5.87□□□□□ -1.47
SHMT2-212ENST00000554467 C10orf95Q9H7T3 257 aa5.87□□□□□ -1.47
SHMT2-212ENST00000554467 KRTAP3-3Q9BYR6 98 aa5.86□□□□□ -1.47
SHMT2-212ENST00000554467 K7ERS5 55 aa5.86□□□□□ -1.47
SHMT2-212ENST00000554467 MUC17Q685J3 4493 aa5.85□□□□□ -1.47
SHMT2-212ENST00000554467 S4R3F8 94 aa5.84□□□□□ -1.47
SHMT2-212ENST00000554467 KRTAP13-4Q3LI77 160 aa5.83□□□□□ -1.48
SHMT2-212ENST00000554467 KRTAP4-1Q9BYQ7 146 aa5.83□□□□□ -1.48
SHMT2-212ENST00000554467 SEC61BP60468 96 aaKnown RBP5.79□□□□□ -1.48
SHMT2-212ENST00000554467 KRTAP10-6P60371 365 aaPredicted RBP5.78□□□□□ -1.48
SHMT2-212ENST00000554467 HMCN2Q8NDA2 5059 aa5.78□□□□□ -1.48
SHMT2-212ENST00000554467 KRTAP3-2Q9BYR7 98 aa5.71□□□□□ -1.5
SHMT2-212ENST00000554467 KRTAP12-2P59991 146 aa5.65□□□□□ -1.5
SHMT2-212ENST00000554467 A0A0A0MQY5 61 aa5.65□□□□□ -1.5
SHMT2-212ENST00000554467 RNF213Q63HN8 5207 aa5.65□□□□□ -1.51
SHMT2-212ENST00000554467 FAT4Q6V0I7 4981 aa5.63□□□□□ -1.51
SHMT2-212ENST00000554467 UBR4Q5T4S7 5183 aa5.63□□□□□ -1.51
SHMT2-212ENST00000554467 KRTAP19-2Q3LHN2 52 aa5.6□□□□□ -1.51
SHMT2-212ENST00000554467 FLGP20930 4061 aaPredicted RBP5.58□□□□□ -1.52
SHMT2-212ENST00000554467 KRTAP12-1P59990 96 aa5.54□□□□□ -1.52
SHMT2-212ENST00000554467 M0QZ58 72 aa5.5□□□□□ -1.53
SHMT2-212ENST00000554467 LORP23490 312 aaPredicted RBP5.5□□□□□ -1.53
SHMT2-212ENST00000554467 R4GN34 69 aa5.47□□□□□ -1.53
SHMT2-212ENST00000554467 LCE2CQ5TA81 110 aa5.41□□□□□ -1.54
SHMT2-212ENST00000554467 LUZP6Q538Z0 58 aa5.41□□□□□ -1.54
SHMT2-212ENST00000554467 PLAC4Q8WY50 150 aa5.35□□□□□ -1.55
SHMT2-212ENST00000554467 M0R2T5 61 aa5.34□□□□□ -1.55
SHMT2-212ENST00000554467 MT1HP80294 61 aa5.29□□□□□ -1.56
SHMT2-212ENST00000554467 CAMK2N1Q7Z7J9 78 aa5.25□□□□□ -1.57
SHMT2-212ENST00000554467 MT1FP04733 61 aa5.14□□□□□ -1.59
SHMT2-212ENST00000554467 KRTAP10-10P60014 251 aa5.14□□□□□ -1.59
SHMT2-212ENST00000554467 MT2AP02795 61 aa5.14□□□□□ -1.59
SHMT2-212ENST00000554467 KRTAP9-8Q9BYQ0 159 aa5.11□□□□□ -1.59
SHMT2-212ENST00000554467 KRTAP19-1Q8IUB9 90 aa5.1□□□□□ -1.59
SHMT2-212ENST00000554467 SPRR2GQ9BYE4 73 aa5.05□□□□□ -1.6
SHMT2-212ENST00000554467 PP632Q6XCG6 107 aa4.97□□□□□ -1.61
SHMT2-212ENST00000554467 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
SHMT2-212ENST00000554467 TNP1P09430 55 aa4.93□□□□□ -1.62
SHMT2-212ENST00000554467 USH2AO75445 5202 aa4.92□□□□□ -1.62
SHMT2-212ENST00000554467 KRTAP9-3Q9BYQ3 159 aa4.91□□□□□ -1.62
SHMT2-212ENST00000554467 MT1BP07438 61 aa4.88□□□□□ -1.63
SHMT2-212ENST00000554467 LCE2AQ5TA79 106 aaPredicted RBP4.88□□□□□ -1.63
SHMT2-212ENST00000554467 KRTAP19-8Q3LI54 63 aa4.86□□□□□ -1.63
SHMT2-212ENST00000554467 LCE2BO14633 110 aa4.8□□□□□ -1.64
SHMT2-212ENST00000554467 MT1XP80297 61 aa4.78□□□□□ -1.64
SHMT2-212ENST00000554467 KRTAP10-5P60370 271 aa4.77□□□□□ -1.65
SHMT2-212ENST00000554467 PRO2289Q9P1D8 64 aa4.75□□□□□ -1.65
SHMT2-212ENST00000554467 FSIP2Q5CZC0 6907 aa4.72□□□□□ -1.65
SHMT2-212ENST00000554467 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
SHMT2-212ENST00000554467 LCE3AQ5TA76 89 aa4.69□□□□□ -1.66
SHMT2-212ENST00000554467 KMT2DO14686 5537 aa4.67□□□□□ -1.66
SHMT2-212ENST00000554467 KRTAP10-7P60409 375 aaPredicted RBP4.66□□□□□ -1.66
SHMT2-212ENST00000554467 KRTAP10-12P60413 245 aa4.58□□□□□ -1.68
SHMT2-212ENST00000554467 SSPOA2VEC9 5147 aa4.58□□□□□ -1.68
SHMT2-212ENST00000554467 INE1O15225 51 aa4.57□□□□□ -1.68
SHMT2-212ENST00000554467 KRTAP4-8A0A0G2JLE6 195 aa4.49□□□□□ -1.69
SHMT2-212ENST00000554467 KRTAP4-8Q9BYQ9 185 aa4.49□□□□□ -1.69
SHMT2-212ENST00000554467 KRTAP8-1Q8IUC2 63 aa4.48□□□□□ -1.69
SHMT2-212ENST00000554467 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
SHMT2-212ENST00000554467 KRTAP19-5Q3LI72 72 aa4.4□□□□□ -1.71
SHMT2-212ENST00000554467 FCGBPQ9Y6R7 5405 aaPredicted RBP4.33□□□□□ -1.72
SHMT2-212ENST00000554467 KRTAP19-6Q3LI70 58 aa4.33□□□□□ -1.72
SHMT2-212ENST00000554467 KRTAP19-7Q3SYF9 63 aa4.25□□□□□ -1.73
SHMT2-212ENST00000554467 LCE2DQ5TA82 110 aaPredicted RBP4.25□□□□□ -1.73
SHMT2-212ENST00000554467 MUC12Q9UKN1 5478 aa4.22□□□□□ -1.73
SHMT2-212ENST00000554467 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
SHMT2-212ENST00000554467 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
SHMT2-212ENST00000554467 LCE3CQ5T5A8 94 aa4.15□□□□□ -1.74
SHMT2-212ENST00000554467 MT1EP04732 61 aa4.15□□□□□ -1.75
SHMT2-212ENST00000554467 KRTAP9-2Q9BYQ4 174 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms