RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 MT1HP80294 61 aa7.12□□□□□ -1.27
SHMT2-210ENST00000553950 CHKB-CPT1BH3BT56 60 aa7.1□□□□□ -1.27
SHMT2-210ENST00000553950 M0R2T5 61 aa7.1□□□□□ -1.27
SHMT2-210ENST00000553950 SPTSSBQ8NFR3 76 aa7.09□□□□□ -1.27
SHMT2-210ENST00000553950 LCA10Q71F78 164 aa7.08□□□□□ -1.28
SHMT2-210ENST00000553950 CSAG1Q6PB30 78 aa7.05□□□□□ -1.28
SHMT2-210ENST00000553950 COA5Q86WW8 74 aa7.05□□□□□ -1.28
SHMT2-210ENST00000553950 LCE2AQ5TA79 106 aaPredicted RBP7.03□□□□□ -1.28
SHMT2-210ENST00000553950 KRTAP3-3Q9BYR6 98 aa6.97□□□□□ -1.29
SHMT2-210ENST00000553950 SERP1Q9Y6X1 66 aa6.95□□□□□ -1.3
SHMT2-210ENST00000553950 KRTAP10-6P60371 365 aaPredicted RBP6.91□□□□□ -1.3
SHMT2-210ENST00000553950 H0YAA0 97 aa6.9□□□□□ -1.3
SHMT2-210ENST00000553950 LORP23490 312 aaPredicted RBP6.87□□□□□ -1.31
SHMT2-210ENST00000553950 SEC61GP60059 68 aa6.81□□□□□ -1.32
SHMT2-210ENST00000553950 RPS28P62857 69 aaKnown RBP6.79□□□□□ -1.32
SHMT2-210ENST00000553950 ADM2Q7Z4H4 148 aa6.78□□□□□ -1.32
SHMT2-210ENST00000553950 KRTAP9-8Q9BYQ0 159 aa6.78□□□□□ -1.32
SHMT2-210ENST00000553950 MT2AP02795 61 aa6.77□□□□□ -1.33
SHMT2-210ENST00000553950 KRTAP10-10P60014 251 aa6.74□□□□□ -1.33
SHMT2-210ENST00000553950 V9GYY9 64 aa6.74□□□□□ -1.33
SHMT2-210ENST00000553950 PRR15LQ9BU68 103 aa6.73□□□□□ -1.33
SHMT2-210ENST00000553950 CRIPTQ9P021 101 aa6.73□□□□□ -1.33
SHMT2-210ENST00000553950 SMIM26A0A096LP01 95 aa6.72□□□□□ -1.33
SHMT2-210ENST00000553950 A0A1B0GU69 56 aa6.71□□□□□ -1.34
SHMT2-210ENST00000553950 MT1FP04733 61 aa6.71□□□□□ -1.34
SHMT2-210ENST00000553950 LINC01558Q9Y6Z2 57 aa6.7□□□□□ -1.34
SHMT2-210ENST00000553950 KRTAP3-2Q9BYR7 98 aa6.66□□□□□ -1.34
SHMT2-210ENST00000553950 P0C880 135 aa6.64□□□□□ -1.35
SHMT2-210ENST00000553950 Q1T7F1 81 aa6.64□□□□□ -1.35
SHMT2-210ENST00000553950 KRTAP9-2Q9BYQ4 174 aa6.64□□□□□ -1.35
SHMT2-210ENST00000553950 R4GN34 69 aa6.62□□□□□ -1.35
SHMT2-210ENST00000553950 M0QZ58 72 aa6.59□□□□□ -1.35
SHMT2-210ENST00000553950 A0A1B0GU33 70 aa6.56□□□□□ -1.36
SHMT2-210ENST00000553950 SPRR2GQ9BYE4 73 aa6.56□□□□□ -1.36
SHMT2-210ENST00000553950 KRTAP9-3Q9BYQ3 159 aa6.55□□□□□ -1.36
SHMT2-210ENST00000553950 LCE2DQ5TA82 110 aaPredicted RBP6.53□□□□□ -1.36
SHMT2-210ENST00000553950 Q5VV11 94 aa6.52□□□□□ -1.37
SHMT2-210ENST00000553950 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
SHMT2-210ENST00000553950 PSPHP1O15172 72 aa6.48□□□□□ -1.37
SHMT2-210ENST00000553950 UQCR11O14957 56 aa6.47□□□□□ -1.37
SHMT2-210ENST00000553950 KRTAP9-6A0A140TA67 174 aa6.42□□□□□ -1.38
SHMT2-210ENST00000553950 KRTAP19-8Q3LI54 63 aa6.42□□□□□ -1.38
SHMT2-210ENST00000553950 LINC01554Q52M75 96 aa6.41□□□□□ -1.38
SHMT2-210ENST00000553950 A6NN06 94 aa6.4□□□□□ -1.38
SHMT2-210ENST00000553950 KRTAP13-4Q3LI77 160 aa6.4□□□□□ -1.38
SHMT2-210ENST00000553950 LCE2BO14633 110 aa6.39□□□□□ -1.39
SHMT2-210ENST00000553950 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
SHMT2-210ENST00000553950 A6NED7 52 aa6.36□□□□□ -1.39
SHMT2-210ENST00000553950 MIR22HGQ0VDD5 57 aa6.35□□□□□ -1.39
SHMT2-210ENST00000553950 PLAC4Q8WY50 150 aa6.33□□□□□ -1.4
SHMT2-210ENST00000553950 A0A0D9SG42 100 aa6.31□□□□□ -1.4
SHMT2-210ENST00000553950 MT1BP07438 61 aa6.29□□□□□ -1.4
SHMT2-210ENST00000553950 CRCT1Q9UGL9 99 aa6.29□□□□□ -1.4
SHMT2-210ENST00000553950 FSIP2Q5CZC0 6907 aa6.25□□□□□ -1.41
SHMT2-210ENST00000553950 USH2AO75445 5202 aa6.24□□□□□ -1.41
SHMT2-210ENST00000553950 A8MU10 97 aa6.24□□□□□ -1.41
SHMT2-210ENST00000553950 K7ERS5 55 aa6.22□□□□□ -1.41
SHMT2-210ENST00000553950 SPINT4Q6UDR6 99 aa6.21□□□□□ -1.42
SHMT2-210ENST00000553950 CDC42SE1Q9NRR8 79 aa6.21□□□□□ -1.42
SHMT2-210ENST00000553950 KRTAP12-1P59990 96 aa6.2□□□□□ -1.42
SHMT2-210ENST00000553950 CAMK2N1Q7Z7J9 78 aa6.18□□□□□ -1.42
SHMT2-210ENST00000553950 PRO2289Q9P1D8 64 aa6.18□□□□□ -1.42
SHMT2-210ENST00000553950 KRTAP12-2P59991 146 aa6.15□□□□□ -1.42
SHMT2-210ENST00000553950 KRTAP19-6Q3LI70 58 aa6.15□□□□□ -1.42
SHMT2-210ENST00000553950 KRTAP10-5P60370 271 aa6.09□□□□□ -1.43
SHMT2-210ENST00000553950 SSPOA2VEC9 5147 aa6.08□□□□□ -1.44
SHMT2-210ENST00000553950 BRK1Q8WUW1 75 aa6.07□□□□□ -1.44
SHMT2-210ENST00000553950 MT1XP80297 61 aa6.04□□□□□ -1.44
SHMT2-210ENST00000553950 FCGBPQ9Y6R7 5405 aaPredicted RBP5.9□□□□□ -1.46
SHMT2-210ENST00000553950 TNP1P09430 55 aa5.84□□□□□ -1.47
SHMT2-210ENST00000553950 C10orf95Q9H7T3 257 aa5.84□□□□□ -1.47
SHMT2-210ENST00000553950 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.83□□□□□ -1.48
SHMT2-210ENST00000553950 ROMO1P60602 79 aa5.82□□□□□ -1.48
SHMT2-210ENST00000553950 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
SHMT2-210ENST00000553950 KRTAP25-1Q3LHN0 102 aa5.79□□□□□ -1.48
SHMT2-210ENST00000553950 KRTAP9-7A8MTY7 169 aa5.78□□□□□ -1.48
SHMT2-210ENST00000553950 KRTAP10-12P60413 245 aa5.77□□□□□ -1.49
SHMT2-210ENST00000553950 KRTAP10-7P60409 375 aaPredicted RBP5.75□□□□□ -1.49
SHMT2-210ENST00000553950 PMAIP1Q13794 54 aa5.73□□□□□ -1.49
SHMT2-210ENST00000553950 MACF1Q9UPN3 7388 aaKnown RBP5.66□□□□□ -1.5
SHMT2-210ENST00000553950 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
SHMT2-210ENST00000553950 KRTAP8-1Q8IUC2 63 aa5.6□□□□□ -1.51
SHMT2-210ENST00000553950 PP632Q6XCG6 107 aa5.58□□□□□ -1.52
SHMT2-210ENST00000553950 LCE3AQ5TA76 89 aa5.55□□□□□ -1.52
SHMT2-210ENST00000553950 KMT2DO14686 5537 aa5.54□□□□□ -1.52
SHMT2-210ENST00000553950 KRTAP4-8A0A0G2JLE6 195 aa5.54□□□□□ -1.52
SHMT2-210ENST00000553950 KRTAP4-8Q9BYQ9 185 aa5.54□□□□□ -1.52
SHMT2-210ENST00000553950 KRTAP6-3Q3LI67 103 aa5.5□□□□□ -1.53
SHMT2-210ENST00000553950 SYNE2Q8WXH0 6885 aaKnown RBP5.49□□□□□ -1.53
SHMT2-210ENST00000553950 KRTAP5-9P26371 169 aa5.47□□□□□ -1.53
SHMT2-210ENST00000553950 KTN1-AS1Q86SY8 53 aa5.45□□□□□ -1.54
SHMT2-210ENST00000553950 SPRR2FQ96RM1 72 aa5.43□□□□□ -1.54
SHMT2-210ENST00000553950 KRTAP19-5Q3LI72 72 aa5.39□□□□□ -1.55
SHMT2-210ENST00000553950 KRTAP19-7Q3SYF9 63 aa5.38□□□□□ -1.55
SHMT2-210ENST00000553950 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
SHMT2-210ENST00000553950 MT1EP04732 61 aa5.33□□□□□ -1.56
SHMT2-210ENST00000553950 SVIPQ8NHG7 77 aa5.32□□□□□ -1.56
SHMT2-210ENST00000553950 PRAC1Q96KF2 57 aa5.3□□□□□ -1.56
SHMT2-210ENST00000553950 MUC12Q9UKN1 5478 aa5.25□□□□□ -1.57
SHMT2-210ENST00000553950 SPRR2EP22531 72 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms