RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 TYMSOSQ8TAI1 123 aa3.35□□□□□ -1.87
CHMP4A-210ENST00000552620 SACSQ9NZJ4 4579 aa3.34□□□□□ -1.87
CHMP4A-210ENST00000552620 RETNLBQ9BQ08 111 aa3.34□□□□□ -1.87
CHMP4A-210ENST00000552620 LRP1BQ9NZR2 4599 aa3.33□□□□□ -1.88
CHMP4A-210ENST00000552620 SPATA8Q6RVD6 105 aa3.33□□□□□ -1.88
CHMP4A-210ENST00000552620 C7orf65Q6ZTY9 151 aa3.33□□□□□ -1.88
CHMP4A-210ENST00000552620 UQCR11O14957 56 aa3.31□□□□□ -1.88
CHMP4A-210ENST00000552620 LINC00304Q8N9R0 145 aa3.3□□□□□ -1.88
CHMP4A-210ENST00000552620 FBN3Q75N90 2809 aa3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 KRTAP10-6P60371 365 aaPredicted RBP3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 MIR22HGQ0VDD5 57 aa3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 PKD1P98161 4303 aa3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 DNHD1Q96M86 4753 aa3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 TGP01266 2768 aa3.29□□□□□ -1.88
CHMP4A-210ENST00000552620 MEGF8Q7Z7M0 2845 aa3.28□□□□□ -1.88
CHMP4A-210ENST00000552620 HYDINQ4G0P3 5121 aa3.27□□□□□ -1.89
CHMP4A-210ENST00000552620 KRTAP10-7P60409 375 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-210ENST00000552620 FAT2Q9NYQ8 4349 aa3.27□□□□□ -1.89
CHMP4A-210ENST00000552620 A8MUU9 505 aa3.26□□□□□ -1.89
CHMP4A-210ENST00000552620 KRTAP21-3Q3LHN1 58 aa3.26□□□□□ -1.89
CHMP4A-210ENST00000552620 C20orf166-AS1Q96NR2 134 aa3.26□□□□□ -1.89
CHMP4A-210ENST00000552620 VPS13BQ7Z7G8 4022 aa3.25□□□□□ -1.89
CHMP4A-210ENST00000552620 DYNC1H1Q14204 4646 aaKnown RBP3.23□□□□□ -1.89
CHMP4A-210ENST00000552620 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.21□□□□□ -1.9
CHMP4A-210ENST00000552620 A0A1B0GVY2 172 aa3.2□□□□□ -1.9
CHMP4A-210ENST00000552620 KRTAP5-11Q6L8G4 156 aa3.2□□□□□ -1.9
CHMP4A-210ENST00000552620 PKHD1L1Q86WI1 4243 aa3.2□□□□□ -1.9
CHMP4A-210ENST00000552620 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
CHMP4A-210ENST00000552620 C9orf92A6NGG3 77 aa3.18□□□□□ -1.9
CHMP4A-210ENST00000552620 SMR3BP02814 79 aaPredicted RBP3.18□□□□□ -1.9
CHMP4A-210ENST00000552620 KRTAP10-4P60372 401 aaPredicted RBP3.18□□□□□ -1.9
CHMP4A-210ENST00000552620 LINC01554Q52M75 96 aa3.18□□□□□ -1.9
CHMP4A-210ENST00000552620 APOBP04114 4563 aaKnown RBP3.18□□□□□ -1.9
CHMP4A-210ENST00000552620 A0A1B0GU33 70 aa3.17□□□□□ -1.9
CHMP4A-210ENST00000552620 COX6B2Q6YFQ2 88 aa3.17□□□□□ -1.9
CHMP4A-210ENST00000552620 H1FX-AS1Q4G0G2 97 aa3.15□□□□□ -1.91
CHMP4A-210ENST00000552620 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
CHMP4A-210ENST00000552620 H0YAA0 97 aa3.13□□□□□ -1.91
CHMP4A-210ENST00000552620 ADM2Q7Z4H4 148 aa3.13□□□□□ -1.91
CHMP4A-210ENST00000552620 PKHD1P08F94 4074 aa3.13□□□□□ -1.91
CHMP4A-210ENST00000552620 FAT1Q14517 4588 aa3.13□□□□□ -1.91
CHMP4A-210ENST00000552620 K7ERS5 55 aa3.12□□□□□ -1.91
CHMP4A-210ENST00000552620 KRTAP10-8P60410 259 aa3.12□□□□□ -1.91
CHMP4A-210ENST00000552620 RYR2Q92736 4967 aa3.11□□□□□ -1.91
CHMP4A-210ENST00000552620 FAT3Q8TDW7 4589 aa3.11□□□□□ -1.91
CHMP4A-210ENST00000552620 CSAG1Q6PB30 78 aa3.1□□□□□ -1.91
CHMP4A-210ENST00000552620 RPL37P61927 97 aaKnown RBP3.09□□□□□ -1.91
CHMP4A-210ENST00000552620 KRTAP10-12P60413 245 aa3.08□□□□□ -1.92
CHMP4A-210ENST00000552620 TNXBP22105 4242 aa3.07□□□□□ -1.92
CHMP4A-210ENST00000552620 CAMK2N1Q7Z7J9 78 aa3.07□□□□□ -1.92
CHMP4A-210ENST00000552620 FLG2Q5D862 2391 aaPredicted RBP3.05□□□□□ -1.92
CHMP4A-210ENST00000552620 HSPG2P98160 4391 aa3.05□□□□□ -1.92
CHMP4A-210ENST00000552620 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
CHMP4A-210ENST00000552620 S4R3F8 94 aa3.04□□□□□ -1.92
CHMP4A-210ENST00000552620 RYR1P21817 5038 aa3.04□□□□□ -1.92
CHMP4A-210ENST00000552620 Q5VSD8 79 aa3.03□□□□□ -1.92
CHMP4A-210ENST00000552620 LRP1Q07954 4544 aaKnown RBP3.03□□□□□ -1.92
CHMP4A-210ENST00000552620 ROMO1P60602 79 aa3.02□□□□□ -1.93
CHMP4A-210ENST00000552620 LUZP6Q538Z0 58 aa3.02□□□□□ -1.93
CHMP4A-210ENST00000552620 LCE3CQ5T5A8 94 aa2.98□□□□□ -1.93
CHMP4A-210ENST00000552620 MYCBP2O75592 4640 aa2.97□□□□□ -1.93
CHMP4A-210ENST00000552620 MT1HL1P0DM35 61 aa2.96□□□□□ -1.94
CHMP4A-210ENST00000552620 KRTAP13-4Q3LI77 160 aa2.96□□□□□ -1.94
CHMP4A-210ENST00000552620 M0QZ58 72 aa2.95□□□□□ -1.94
CHMP4A-210ENST00000552620 P0C880 135 aa2.95□□□□□ -1.94
CHMP4A-210ENST00000552620 TPRXLQ17RH7 258 aa2.95□□□□□ -1.94
CHMP4A-210ENST00000552620 A0A0D9SG42 100 aa2.94□□□□□ -1.94
CHMP4A-210ENST00000552620 DMBT1Q9UGM3 2413 aaPredicted RBP2.93□□□□□ -1.94
CHMP4A-210ENST00000552620 KMT2CQ8NEZ4 4911 aaKnown RBP2.93□□□□□ -1.94
CHMP4A-210ENST00000552620 KRTAP10-5P60370 271 aa2.93□□□□□ -1.94
CHMP4A-210ENST00000552620 RYR3Q15413 4870 aa2.91□□□□□ -1.94
CHMP4A-210ENST00000552620 CRIPTQ9P021 101 aa2.9□□□□□ -1.95
CHMP4A-210ENST00000552620 KRTAP12-1P59990 96 aa2.89□□□□□ -1.95
CHMP4A-210ENST00000552620 KRTAP12-2P59991 146 aa2.88□□□□□ -1.95
CHMP4A-210ENST00000552620 SPINT4Q6UDR6 99 aa2.88□□□□□ -1.95
CHMP4A-210ENST00000552620 KIAA1109Q2LD37 5005 aa2.87□□□□□ -1.95
CHMP4A-210ENST00000552620 LRP2P98164 4655 aa2.83□□□□□ -1.96
CHMP4A-210ENST00000552620 C10orf95Q9H7T3 257 aa2.81□□□□□ -1.96
CHMP4A-210ENST00000552620 R4GN34 69 aa2.81□□□□□ -1.96
CHMP4A-210ENST00000552620 KRTAP9-6A8MVA2 160 aa2.79□□□□□ -1.96
CHMP4A-210ENST00000552620 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
CHMP4A-210ENST00000552620 MUC17Q685J3 4493 aa2.78□□□□□ -1.96
CHMP4A-210ENST00000552620 LPAP08519 4548 aa2.76□□□□□ -1.97
CHMP4A-210ENST00000552620 HERC1Q15751 4861 aa2.76□□□□□ -1.97
CHMP4A-210ENST00000552620 EPPK1P58107 5090 aaKnown RBP2.75□□□□□ -1.97
CHMP4A-210ENST00000552620 ABCA13Q86UQ4 5058 aa2.74□□□□□ -1.97
CHMP4A-210ENST00000552620 KRTAP19-2Q3LHN2 52 aa2.72□□□□□ -1.97
CHMP4A-210ENST00000552620 PP632Q6XCG6 107 aa2.72□□□□□ -1.97
CHMP4A-210ENST00000552620 KRTAP4-1Q9BYQ7 146 aa2.72□□□□□ -1.97
CHMP4A-210ENST00000552620 LCE3EQ5T5B0 92 aa2.71□□□□□ -1.98
CHMP4A-210ENST00000552620 HERC2O95714 4834 aa2.68□□□□□ -1.98
CHMP4A-210ENST00000552620 BIRC6Q9NR09 4857 aa2.68□□□□□ -1.98
CHMP4A-210ENST00000552620 KRTAP5-4Q6L8H1 288 aa2.68□□□□□ -1.98
CHMP4A-210ENST00000552620 PLAC4Q8WY50 150 aa2.67□□□□□ -1.98
CHMP4A-210ENST00000552620 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
CHMP4A-210ENST00000552620 FLGP20930 4061 aaPredicted RBP2.64□□□□□ -1.99
CHMP4A-210ENST00000552620 KRTAP5-9P26371 169 aa2.62□□□□□ -1.99
CHMP4A-210ENST00000552620 TNP1P09430 55 aa2.61□□□□□ -1.99
CHMP4A-210ENST00000552620 SPRR2GQ9BYE4 73 aa2.56□□□□□ -2
CHMP4A-210ENST00000552620 HMCN2Q8NDA2 5059 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms