RNA–Protein interactions for RNA: ENST00000549655.5

BRF1-215, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 2

Gene BRF1, Length 1,962 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-215ENST00000549655 A6NED7 52 aa9.77□□□□□ -0.85
BRF1-215ENST00000549655 SEC61BP60468 96 aaKnown RBP9.69□□□□□ -0.86
BRF1-215ENST00000549655 A8MU10 97 aa9.67□□□□□ -0.86
BRF1-215ENST00000549655 LCA10Q71F78 164 aa9.66□□□□□ -0.86
BRF1-215ENST00000549655 SEC61GP60059 68 aa9.65□□□□□ -0.86
BRF1-215ENST00000549655 RBM12B-AS1Q9P1G2 102 aa9.63□□□□□ -0.87
BRF1-215ENST00000549655 H1FX-AS1Q4G0G2 97 aa9.62□□□□□ -0.87
BRF1-215ENST00000549655 KRTAP3-3Q9BYR6 98 aa9.62□□□□□ -0.87
BRF1-215ENST00000549655 S4R3F8 94 aa9.62□□□□□ -0.87
BRF1-215ENST00000549655 CDC42SE1Q9NRR8 79 aa9.61□□□□□ -0.87
BRF1-215ENST00000549655 PCLOQ9Y6V0 5065 aa9.55□□□□□ -0.88
BRF1-215ENST00000549655 UQCR11O14957 56 aa9.55□□□□□ -0.88
BRF1-215ENST00000549655 KRTAP4-1Q9BYQ7 146 aa9.52□□□□□ -0.89
BRF1-215ENST00000549655 MIR22HGQ0VDD5 57 aa9.48□□□□□ -0.89
BRF1-215ENST00000549655 SPATA8Q6RVD6 105 aa9.48□□□□□ -0.89
BRF1-215ENST00000549655 A0A1B0GU33 70 aa9.43□□□□□ -0.9
BRF1-215ENST00000549655 MUC17Q685J3 4493 aa9.42□□□□□ -0.9
BRF1-215ENST00000549655 HERC1Q15751 4861 aa9.41□□□□□ -0.9
BRF1-215ENST00000549655 LCE2DQ5TA82 110 aaPredicted RBP9.4□□□□□ -0.9
BRF1-215ENST00000549655 CSAG1Q6PB30 78 aa9.37□□□□□ -0.91
BRF1-215ENST00000549655 KRTAP10-6P60371 365 aaPredicted RBP9.36□□□□□ -0.91
BRF1-215ENST00000549655 PMAIP1Q13794 54 aa9.35□□□□□ -0.91
BRF1-215ENST00000549655 KRTAP3-2Q9BYR7 98 aa9.35□□□□□ -0.91
BRF1-215ENST00000549655 H0YAA0 97 aa9.33□□□□□ -0.92
BRF1-215ENST00000549655 HMCN2Q8NDA2 5059 aa9.31□□□□□ -0.92
BRF1-215ENST00000549655 KRTAP19-2Q3LHN2 52 aa9.29□□□□□ -0.92
BRF1-215ENST00000549655 P0C880 135 aa9.26□□□□□ -0.93
BRF1-215ENST00000549655 ADM2Q7Z4H4 148 aa9.26□□□□□ -0.93
BRF1-215ENST00000549655 A6NN06 94 aa9.24□□□□□ -0.93
BRF1-215ENST00000549655 MUC2Q02817 5179 aa9.19□□□□□ -0.94
BRF1-215ENST00000549655 KRTAP13-4Q3LI77 160 aa9.16□□□□□ -0.94
BRF1-215ENST00000549655 A0A0D9SG42 100 aa9.04□□□□□ -0.96
BRF1-215ENST00000549655 KTN1-AS1Q86SY8 53 aa9.01□□□□□ -0.97
BRF1-215ENST00000549655 FLGP20930 4061 aaPredicted RBP9.01□□□□□ -0.97
BRF1-215ENST00000549655 M0QZ58 72 aa8.99□□□□□ -0.97
BRF1-215ENST00000549655 K7ERS5 55 aa8.97□□□□□ -0.97
BRF1-215ENST00000549655 LCE2CQ5TA81 110 aa8.96□□□□□ -0.98
BRF1-215ENST00000549655 UBR4Q5T4S7 5183 aa8.91□□□□□ -0.98
BRF1-215ENST00000549655 R4GN34 69 aa8.9□□□□□ -0.99
BRF1-215ENST00000549655 LORP23490 312 aaPredicted RBP8.88□□□□□ -0.99
BRF1-215ENST00000549655 RNF213Q63HN8 5207 aa8.86□□□□□ -0.99
BRF1-215ENST00000549655 KRTAP12-2P59991 146 aa8.82□□□□□ -1
BRF1-215ENST00000549655 KRTAP12-1P59990 96 aa8.81□□□□□ -1
BRF1-215ENST00000549655 LINC01554Q52M75 96 aa8.79□□□□□ -1
BRF1-215ENST00000549655 SPINT4Q6UDR6 99 aa8.79□□□□□ -1
BRF1-215ENST00000549655 FAT4Q6V0I7 4981 aa8.76□□□□□ -1.01
BRF1-215ENST00000549655 MT1HP80294 61 aa8.76□□□□□ -1.01
BRF1-215ENST00000549655 PRAC1Q96KF2 57 aa8.75□□□□□ -1.01
BRF1-215ENST00000549655 M0R2T5 61 aa8.73□□□□□ -1.01
BRF1-215ENST00000549655 ROMO1P60602 79 aa8.66□□□□□ -1.02
BRF1-215ENST00000549655 CRIPTQ9P021 101 aa8.65□□□□□ -1.02
BRF1-215ENST00000549655 MT2AP02795 61 aa8.48□□□□□ -1.05
BRF1-215ENST00000549655 KRTAP9-8Q9BYQ0 159 aa8.48□□□□□ -1.05
BRF1-215ENST00000549655 MT1FP04733 61 aa8.46□□□□□ -1.06
BRF1-215ENST00000549655 KRTAP10-10P60014 251 aa8.44□□□□□ -1.06
BRF1-215ENST00000549655 KRTAP25-1Q3LHN0 102 aa8.44□□□□□ -1.06
BRF1-215ENST00000549655 SPRR2GQ9BYE4 73 aa8.44□□□□□ -1.06
BRF1-215ENST00000549655 KRTAP19-1Q8IUB9 90 aa8.41□□□□□ -1.06
BRF1-215ENST00000549655 CAMK2N1Q7Z7J9 78 aa8.37□□□□□ -1.07
BRF1-215ENST00000549655 C10orf95Q9H7T3 257 aa8.33□□□□□ -1.08
BRF1-215ENST00000549655 PLAC4Q8WY50 150 aa8.23□□□□□ -1.09
BRF1-215ENST00000549655 LCE2AQ5TA79 106 aaPredicted RBP8.19□□□□□ -1.1
BRF1-215ENST00000549655 KRTAP19-8Q3LI54 63 aa8.16□□□□□ -1.1
BRF1-215ENST00000549655 KRTAP9-3Q9BYQ3 159 aa8.16□□□□□ -1.1
BRF1-215ENST00000549655 LOC100996750A0A140TA64 210 aa8.09□□□□□ -1.11
BRF1-215ENST00000549655 KRTAP4-6Q9BYQ5 205 aa8.09□□□□□ -1.11
BRF1-215ENST00000549655 MT1BP07438 61 aa8.06□□□□□ -1.12
BRF1-215ENST00000549655 TNP1P09430 55 aa7.99□□□□□ -1.13
BRF1-215ENST00000549655 LCE2BO14633 110 aa7.9□□□□□ -1.14
BRF1-215ENST00000549655 PP632Q6XCG6 107 aa7.89□□□□□ -1.15
BRF1-215ENST00000549655 MT1XP80297 61 aa7.87□□□□□ -1.15
BRF1-215ENST00000549655 KRTAP10-5P60370 271 aa7.86□□□□□ -1.15
BRF1-215ENST00000549655 H3BS24 57 aa7.84□□□□□ -1.15
BRF1-215ENST00000549655 KRTAP23-1A1A580 65 aa7.79□□□□□ -1.16
BRF1-215ENST00000549655 PRO2289Q9P1D8 64 aa7.71□□□□□ -1.18
BRF1-215ENST00000549655 LCE3AQ5TA76 89 aa7.63□□□□□ -1.19
BRF1-215ENST00000549655 USH2AO75445 5202 aa7.59□□□□□ -1.19
BRF1-215ENST00000549655 KRTAP10-7P60409 375 aaPredicted RBP7.59□□□□□ -1.2
BRF1-215ENST00000549655 KRTAP10-12P60413 245 aa7.55□□□□□ -1.2
BRF1-215ENST00000549655 KRTAP15-1Q3LI76 137 aa7.55□□□□□ -1.2
BRF1-215ENST00000549655 KRTAP8-1Q8IUC2 63 aa7.46□□□□□ -1.22
BRF1-215ENST00000549655 SSPOA2VEC9 5147 aa7.31□□□□□ -1.24
BRF1-215ENST00000549655 KRTAP12-3P60328 96 aa7.31□□□□□ -1.24
BRF1-215ENST00000549655 KRTAP19-6Q3LI70 58 aa7.3□□□□□ -1.24
BRF1-215ENST00000549655 KRTAP4-8A0A0G2JLE6 195 aa7.23□□□□□ -1.25
BRF1-215ENST00000549655 KRTAP4-8Q9BYQ9 185 aa7.23□□□□□ -1.25
BRF1-215ENST00000549655 FSIP2Q5CZC0 6907 aa7.21□□□□□ -1.26
BRF1-215ENST00000549655 NDUFAF8A1L188 74 aa7.19□□□□□ -1.26
BRF1-215ENST00000549655 KRTAP19-5Q3LI72 72 aa7.19□□□□□ -1.26
BRF1-215ENST00000549655 KMT2DO14686 5537 aa7.18□□□□□ -1.26
BRF1-215ENST00000549655 SPRR5A0A1B0GTR4 108 aa7.12□□□□□ -1.27
BRF1-215ENST00000549655 LUZP6Q538Z0 58 aa7.03□□□□□ -1.28
BRF1-215ENST00000549655 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
BRF1-215ENST00000549655 FCGBPQ9Y6R7 5405 aaPredicted RBP6.95□□□□□ -1.3
BRF1-215ENST00000549655 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.95□□□□□ -1.3
BRF1-215ENST00000549655 KRTAP9-2Q9BYQ4 174 aa6.93□□□□□ -1.3
BRF1-215ENST00000549655 KRTAP9-6A0A140TA67 174 aa6.9□□□□□ -1.3
BRF1-215ENST00000549655 MT1EP04732 61 aa6.86□□□□□ -1.31
BRF1-215ENST00000549655 LCE3CQ5T5A8 94 aa6.85□□□□□ -1.31
BRF1-215ENST00000549655 MT1LQ93083 61 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms