RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 hDV103S1A0JD37 113 aa4.36□□□□□ -1.71
USP28-215ENST00000545608 Q96NJ1 140 aa4.36□□□□□ -1.71
USP28-215ENST00000545608 CYP4F30PQ9H0H9 118 aa4.35□□□□□ -1.71
USP28-215ENST00000545608 MP68P56378 58 aa4.34□□□□□ -1.71
USP28-215ENST00000545608 H3BPC8 53 aa4.33□□□□□ -1.72
USP28-215ENST00000545608 C20orf166-AS1Q96NR2 134 aa4.33□□□□□ -1.72
USP28-215ENST00000545608 A8MUU9 505 aa4.32□□□□□ -1.72
USP28-215ENST00000545608 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
USP28-215ENST00000545608 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
USP28-215ENST00000545608 A0A087WSZ3 146 aa4.31□□□□□ -1.72
USP28-215ENST00000545608 C1orf64Q8NEQ6 169 aa4.31□□□□□ -1.72
USP28-215ENST00000545608 NDUFS5O43920 106 aa4.29□□□□□ -1.72
USP28-215ENST00000545608 DSCR10P59022 87 aa4.29□□□□□ -1.72
USP28-215ENST00000545608 SPANXA2-OT1Q8N9U9 137 aa4.29□□□□□ -1.72
USP28-215ENST00000545608 ZCCHC13Q8WW36 166 aaKnown RBP4.29□□□□□ -1.72
USP28-215ENST00000545608 TRAV22A0A0B4J277 110 aa4.28□□□□□ -1.72
USP28-215ENST00000545608 KRTAP16-1A8MUX0 517 aa4.28□□□□□ -1.72
USP28-215ENST00000545608 HCG22E2RYF7 251 aa4.28□□□□□ -1.72
USP28-215ENST00000545608 Q8N9L7 120 aa4.28□□□□□ -1.72
USP28-215ENST00000545608 A0A1W2PNM2 257 aa4.27□□□□□ -1.73
USP28-215ENST00000545608 PSPHP1O15172 72 aa4.25□□□□□ -1.73
USP28-215ENST00000545608 CHKB-CPT1BH3BT56 60 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 MT2AP02795 61 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 LINC00313P59037 77 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 NOTCH2NLQ7Z3S9 236 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 KTN1-AS1Q86SY8 53 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 LINC00208Q96KT6 92 aa4.24□□□□□ -1.73
USP28-215ENST00000545608 HRES1P13985 223 aa4.22□□□□□ -1.73
USP28-215ENST00000545608 DEFB116Q30KQ4 102 aa4.22□□□□□ -1.73
USP28-215ENST00000545608 A8MUN3 132 aa4.21□□□□□ -1.74
USP28-215ENST00000545608 MT1FP04733 61 aa4.21□□□□□ -1.74
USP28-215ENST00000545608 A6NED7 52 aa4.2□□□□□ -1.74
USP28-215ENST00000545608 H0Y9P7 68 aa4.2□□□□□ -1.74
USP28-215ENST00000545608 K7EQZ3 153 aa4.2□□□□□ -1.74
USP28-215ENST00000545608 PRR15LQ9BU68 103 aa4.2□□□□□ -1.74
USP28-215ENST00000545608 LINC00472Q9H8W2 130 aa4.2□□□□□ -1.74
USP28-215ENST00000545608 USH2AO75445 5202 aa4.19□□□□□ -1.74
USP28-215ENST00000545608 Q5VV11 94 aa4.19□□□□□ -1.74
USP28-215ENST00000545608 RBM12B-AS1Q9P1G2 102 aa4.19□□□□□ -1.74
USP28-215ENST00000545608 SSPOA2VEC9 5147 aa4.19□□□□□ -1.74
USP28-215ENST00000545608 IGHV6-1A0A0B4J1U7 121 aa4.18□□□□□ -1.74
USP28-215ENST00000545608 LOC101927531A0A1B0GV80 90 aa4.18□□□□□ -1.74
USP28-215ENST00000545608 CASC2Q6XLA1 102 aa4.18□□□□□ -1.74
USP28-215ENST00000545608 KRTAP10-10P60014 251 aa4.17□□□□□ -1.74
USP28-215ENST00000545608 SPTSSBQ8NFR3 76 aa4.17□□□□□ -1.74
USP28-215ENST00000545608 TP53AIP1Q9HCN2 124 aa4.17□□□□□ -1.74
USP28-215ENST00000545608 CDC42SE1Q9NRR8 79 aa4.17□□□□□ -1.74
USP28-215ENST00000545608 WFDC13Q8IUB5 93 aa4.16□□□□□ -1.74
USP28-215ENST00000545608 C7orf65Q6ZTY9 151 aa4.15□□□□□ -1.75
USP28-215ENST00000545608 A0A1B0GVX0 72 aa4.14□□□□□ -1.75
USP28-215ENST00000545608 A8MWP4 228 aa4.14□□□□□ -1.75
USP28-215ENST00000545608 C8orf87E5RJ46 101 aa4.14□□□□□ -1.75
USP28-215ENST00000545608 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
USP28-215ENST00000545608 COA5Q86WW8 74 aa4.13□□□□□ -1.75
USP28-215ENST00000545608 LINC01558Q9Y6Z2 57 aa4.13□□□□□ -1.75
USP28-215ENST00000545608 NDUFAF8A1L188 74 aa4.12□□□□□ -1.75
USP28-215ENST00000545608 SPINK7P58062 85 aa4.12□□□□□ -1.75
USP28-215ENST00000545608 LCA10Q71F78 164 aa4.12□□□□□ -1.75
USP28-215ENST00000545608 A6NN06 94 aa4.11□□□□□ -1.75
USP28-215ENST00000545608 LCE1AQ5T7P2 110 aa4.11□□□□□ -1.75
USP28-215ENST00000545608 FCGBPQ9Y6R7 5405 aaPredicted RBP4.1□□□□□ -1.75
USP28-215ENST00000545608 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
USP28-215ENST00000545608 C8orf17Q9NRJ1 99 aa4.06□□□□□ -1.76
USP28-215ENST00000545608 MMP24-AS1A0A0U1RRL7 71 aa4.03□□□□□ -1.76
USP28-215ENST00000545608 MT3P25713 68 aa4.03□□□□□ -1.76
USP28-215ENST00000545608 ACYP2P14621 99 aa4.02□□□□□ -1.77
USP28-215ENST00000545608 MACF1Q9UPN3 7388 aaKnown RBP4.01□□□□□ -1.77
USP28-215ENST00000545608 MRPL34Q9BQ48 92 aaKnown RBP3.99□□□□□ -1.77
USP28-215ENST00000545608 A8MU10 97 aa3.98□□□□□ -1.77
USP28-215ENST00000545608 H1FX-AS1Q4G0G2 97 aa3.98□□□□□ -1.77
USP28-215ENST00000545608 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
USP28-215ENST00000545608 A0A1B0GU69 56 aa3.96□□□□□ -1.78
USP28-215ENST00000545608 LINC01554Q52M75 96 aa3.96□□□□□ -1.78
USP28-215ENST00000545608 UQCR11O14957 56 aa3.94□□□□□ -1.78
USP28-215ENST00000545608 KRTAP6-3Q3LI67 103 aa3.94□□□□□ -1.78
USP28-215ENST00000545608 Q5W150 140 aa3.93□□□□□ -1.78
USP28-215ENST00000545608 SPATA8Q6RVD6 105 aa3.93□□□□□ -1.78
USP28-215ENST00000545608 MIR22HGQ0VDD5 57 aa3.91□□□□□ -1.78
USP28-215ENST00000545608 DMAC1Q96GE9 116 aa3.91□□□□□ -1.78
USP28-215ENST00000545608 MT1BP07438 61 aa3.84□□□□□ -1.79
USP28-215ENST00000545608 KRTAP19-8Q3LI54 63 aa3.8□□□□□ -1.8
USP28-215ENST00000545608 CSAG1Q6PB30 78 aa3.79□□□□□ -1.8
USP28-215ENST00000545608 SPRR2GQ9BYE4 73 aa3.79□□□□□ -1.8
USP28-215ENST00000545608 S4R3F8 94 aa3.79□□□□□ -1.8
USP28-215ENST00000545608 K7ERS5 55 aa3.78□□□□□ -1.8
USP28-215ENST00000545608 KRTAP10-5P60370 271 aa3.76□□□□□ -1.81
USP28-215ENST00000545608 ADM2Q7Z4H4 148 aa3.76□□□□□ -1.81
USP28-215ENST00000545608 NEBP20929 6669 aa3.75□□□□□ -1.81
USP28-215ENST00000545608 KRTAP2-2Q9BYT5 123 aa3.74□□□□□ -1.81
USP28-215ENST00000545608 KRTAP25-1Q3LHN0 102 aa3.71□□□□□ -1.82
USP28-215ENST00000545608 KRTAP5-9P26371 169 aa3.7□□□□□ -1.82
USP28-215ENST00000545608 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
USP28-215ENST00000545608 ROMO1P60602 79 aa3.68□□□□□ -1.82
USP28-215ENST00000545608 MUC12Q9UKN1 5478 aa3.67□□□□□ -1.82
USP28-215ENST00000545608 A0A1B0GU33 70 aa3.67□□□□□ -1.82
USP28-215ENST00000545608 CRIPTQ9P021 101 aa3.66□□□□□ -1.82
USP28-215ENST00000545608 H0YAA0 97 aa3.6□□□□□ -1.83
USP28-215ENST00000545608 KMT2DO14686 5537 aa3.6□□□□□ -1.83
USP28-215ENST00000545608 KRTAP2-3P0C7H8 128 aa3.58□□□□□ -1.84
USP28-215ENST00000545608 KRTAP2-4Q9BYR9 128 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms