RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 XP32Q5T750 250 aa9.41□□□□□ -0.9
VIM-209ENST00000544301 MYCBP2O75592 4640 aa9.4□□□□□ -0.9
VIM-209ENST00000544301 MT1HL1P0DM35 61 aa9.39□□□□□ -0.91
VIM-209ENST00000544301 EPPK1P58107 5090 aaKnown RBP9.28□□□□□ -0.92
VIM-209ENST00000544301 A0A1B0GU33 70 aa9.26□□□□□ -0.93
VIM-209ENST00000544301 H0YAA0 97 aa9.26□□□□□ -0.93
VIM-209ENST00000544301 H1FX-AS1Q4G0G2 97 aa9.24□□□□□ -0.93
VIM-209ENST00000544301 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
VIM-209ENST00000544301 TPRXLQ17RH7 258 aa9.13□□□□□ -0.95
VIM-209ENST00000544301 ADM2Q7Z4H4 148 aa9.13□□□□□ -0.95
VIM-209ENST00000544301 S4R3F8 94 aa9.13□□□□□ -0.95
VIM-209ENST00000544301 PRAC1Q96KF2 57 aa9.12□□□□□ -0.95
VIM-209ENST00000544301 LRP2P98164 4655 aa9.09□□□□□ -0.95
VIM-209ENST00000544301 LPAP08519 4548 aa9.08□□□□□ -0.96
VIM-209ENST00000544301 KRTAP10-6P60371 365 aaPredicted RBP9.07□□□□□ -0.96
VIM-209ENST00000544301 KRTAP4-5Q9BYR2 181 aa9.07□□□□□ -0.96
VIM-209ENST00000544301 ABCA13Q86UQ4 5058 aa9.04□□□□□ -0.96
VIM-209ENST00000544301 KRTAP3-2Q9BYR7 98 aa9.03□□□□□ -0.96
VIM-209ENST00000544301 KRTAP13-4Q3LI77 160 aa8.94□□□□□ -0.98
VIM-209ENST00000544301 H3BS24 57 aa8.92□□□□□ -0.98
VIM-209ENST00000544301 P0C880 135 aa8.91□□□□□ -0.98
VIM-209ENST00000544301 LINC01554Q52M75 96 aa8.91□□□□□ -0.98
VIM-209ENST00000544301 K7ERS5 55 aa8.89□□□□□ -0.99
VIM-209ENST00000544301 LCE2DQ5TA82 110 aaPredicted RBP8.89□□□□□ -0.99
VIM-209ENST00000544301 CSAG1Q6PB30 78 aa8.89□□□□□ -0.99
VIM-209ENST00000544301 A0A0D9SG42 100 aa8.83□□□□□ -1
VIM-209ENST00000544301 SEC61BP60468 96 aaKnown RBP8.78□□□□□ -1
VIM-209ENST00000544301 HERC2O95714 4834 aa8.78□□□□□ -1
VIM-209ENST00000544301 J3QL48 77 aa8.77□□□□□ -1.01
VIM-209ENST00000544301 MUC17Q685J3 4493 aa8.76□□□□□ -1.01
VIM-209ENST00000544301 KRTAP25-1Q3LHN0 102 aa8.69□□□□□ -1.02
VIM-209ENST00000544301 ROMO1P60602 79 aa8.68□□□□□ -1.02
VIM-209ENST00000544301 KRTAP4-1Q9BYQ7 146 aa8.68□□□□□ -1.02
VIM-209ENST00000544301 M0QZ58 72 aa8.63□□□□□ -1.03
VIM-209ENST00000544301 KRTAP12-2P59991 146 aa8.63□□□□□ -1.03
VIM-209ENST00000544301 BIRC6Q9NR09 4857 aa8.63□□□□□ -1.03
VIM-209ENST00000544301 CRIPTQ9P021 101 aa8.6□□□□□ -1.03
VIM-209ENST00000544301 KRTAP12-1P59990 96 aa8.59□□□□□ -1.03
VIM-209ENST00000544301 SPINT4Q6UDR6 99 aa8.55□□□□□ -1.04
VIM-209ENST00000544301 KRTAP19-2Q3LHN2 52 aa8.53□□□□□ -1.04
VIM-209ENST00000544301 R4GN34 69 aa8.45□□□□□ -1.06
VIM-209ENST00000544301 LORP23490 312 aaPredicted RBP8.41□□□□□ -1.06
VIM-209ENST00000544301 MUC2Q02817 5179 aa8.37□□□□□ -1.07
VIM-209ENST00000544301 FLGP20930 4061 aaPredicted RBP8.36□□□□□ -1.07
VIM-209ENST00000544301 C10orf95Q9H7T3 257 aa8.35□□□□□ -1.07
VIM-209ENST00000544301 HERC1Q15751 4861 aa8.35□□□□□ -1.07
VIM-209ENST00000544301 HMCN2Q8NDA2 5059 aa8.31□□□□□ -1.08
VIM-209ENST00000544301 PCLOQ9Y6V0 5065 aa8.31□□□□□ -1.08
VIM-209ENST00000544301 LCE2CQ5TA81 110 aa8.08□□□□□ -1.12
VIM-209ENST00000544301 CAMK2N1Q7Z7J9 78 aa7.99□□□□□ -1.13
VIM-209ENST00000544301 FAT4Q6V0I7 4981 aa7.97□□□□□ -1.13
VIM-209ENST00000544301 RNF213Q63HN8 5207 aa7.95□□□□□ -1.14
VIM-209ENST00000544301 UBR4Q5T4S7 5183 aa7.89□□□□□ -1.15
VIM-209ENST00000544301 KRTAP15-1Q3LI76 137 aa7.88□□□□□ -1.15
VIM-209ENST00000544301 MT1HP80294 61 aa7.86□□□□□ -1.15
VIM-209ENST00000544301 M0R2T5 61 aa7.84□□□□□ -1.15
VIM-209ENST00000544301 SPRR2GQ9BYE4 73 aa7.81□□□□□ -1.16
VIM-209ENST00000544301 KRTAP19-1Q8IUB9 90 aa7.78□□□□□ -1.16
VIM-209ENST00000544301 PP632Q6XCG6 107 aa7.76□□□□□ -1.17
VIM-209ENST00000544301 NDUFAF8A1L188 74 aa7.73□□□□□ -1.17
VIM-209ENST00000544301 MT2AP02795 61 aa7.7□□□□□ -1.18
VIM-209ENST00000544301 MT1FP04733 61 aa7.69□□□□□ -1.18
VIM-209ENST00000544301 TNP1P09430 55 aa7.69□□□□□ -1.18
VIM-209ENST00000544301 PLAC4Q8WY50 150 aa7.68□□□□□ -1.18
VIM-209ENST00000544301 KRTAP9-8Q9BYQ0 159 aa7.67□□□□□ -1.18
VIM-209ENST00000544301 KRTAP10-10P60014 251 aa7.66□□□□□ -1.18
VIM-209ENST00000544301 A0A0A0MQY5 61 aa7.62□□□□□ -1.19
VIM-209ENST00000544301 KRTAP23-1A1A580 65 aa7.58□□□□□ -1.2
VIM-209ENST00000544301 KRTAP19-8Q3LI54 63 aa7.5□□□□□ -1.21
VIM-209ENST00000544301 LCE2BO14633 110 aa7.42□□□□□ -1.22
VIM-209ENST00000544301 MT1BP07438 61 aa7.4□□□□□ -1.23
VIM-209ENST00000544301 KRTAP9-3Q9BYQ3 159 aa7.35□□□□□ -1.23
VIM-209ENST00000544301 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
VIM-209ENST00000544301 LCE3AQ5TA76 89 aa7.31□□□□□ -1.24
VIM-209ENST00000544301 MT1XP80297 61 aa7.3□□□□□ -1.24
VIM-209ENST00000544301 LUZP6Q538Z0 58 aa7.28□□□□□ -1.24
VIM-209ENST00000544301 SPRR5A0A1B0GTR4 108 aa7.18□□□□□ -1.26
VIM-209ENST00000544301 KRTAP8-1Q8IUC2 63 aa7.14□□□□□ -1.27
VIM-209ENST00000544301 KRTAP10-12P60413 245 aa7.09□□□□□ -1.27
VIM-209ENST00000544301 LCE2AQ5TA79 106 aaPredicted RBP7.09□□□□□ -1.28
VIM-209ENST00000544301 KRTAP10-7P60409 375 aaPredicted RBP7.07□□□□□ -1.28
VIM-209ENST00000544301 PRO2289Q9P1D8 64 aa7.06□□□□□ -1.28
VIM-209ENST00000544301 KRTAP12-3P60328 96 aa6.97□□□□□ -1.29
VIM-209ENST00000544301 USH2AO75445 5202 aa6.88□□□□□ -1.31
VIM-209ENST00000544301 KRTAP19-5Q3LI72 72 aa6.75□□□□□ -1.33
VIM-209ENST00000544301 KMT2DO14686 5537 aa6.7□□□□□ -1.34
VIM-209ENST00000544301 KRTAP4-8A0A0G2JLE6 195 aa6.67□□□□□ -1.34
VIM-209ENST00000544301 KRTAP4-8Q9BYQ9 185 aa6.67□□□□□ -1.34
VIM-209ENST00000544301 SSPOA2VEC9 5147 aa6.58□□□□□ -1.36
VIM-209ENST00000544301 LCE3CQ5T5A8 94 aa6.56□□□□□ -1.36
VIM-209ENST00000544301 KRTAP19-7Q3SYF9 63 aa6.51□□□□□ -1.37
VIM-209ENST00000544301 KRTAP19-6Q3LI70 58 aa6.43□□□□□ -1.38
VIM-209ENST00000544301 MT1EP04732 61 aa6.34□□□□□ -1.39
VIM-209ENST00000544301 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
VIM-209ENST00000544301 MT1LQ93083 61 aa6.31□□□□□ -1.4
VIM-209ENST00000544301 KRTAP19-4Q3LI73 84 aa6.29□□□□□ -1.4
VIM-209ENST00000544301 KRTAP4-7Q9BYR0 210 aa6.29□□□□□ -1.4
VIM-209ENST00000544301 INE1O15225 51 aa6.28□□□□□ -1.4
VIM-209ENST00000544301 FSIP2Q5CZC0 6907 aa6.28□□□□□ -1.4
VIM-209ENST00000544301 FCGBPQ9Y6R7 5405 aaPredicted RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms