RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 A8MUU9 505 aa9.2□□□□□ -0.94
SPIDR-227ENST00000541342 KRTAP4-5Q9BYR2 181 aa9.18□□□□□ -0.94
SPIDR-227ENST00000541342 KRTAP3-1Q9BYR8 98 aa9.18□□□□□ -0.94
SPIDR-227ENST00000541342 H0YAA0 97 aa9.12□□□□□ -0.95
SPIDR-227ENST00000541342 ABCA13Q86UQ4 5058 aa9.08□□□□□ -0.96
SPIDR-227ENST00000541342 LINC01554Q52M75 96 aa9.05□□□□□ -0.96
SPIDR-227ENST00000541342 CSAG1Q6PB30 78 aa9.05□□□□□ -0.96
SPIDR-227ENST00000541342 BIRC6Q9NR09 4857 aa9.01□□□□□ -0.97
SPIDR-227ENST00000541342 XP32Q5T750 250 aa8.99□□□□□ -0.97
SPIDR-227ENST00000541342 HERC2O95714 4834 aa8.99□□□□□ -0.97
SPIDR-227ENST00000541342 A0A1B0GU33 70 aa8.97□□□□□ -0.97
SPIDR-227ENST00000541342 RPL37P61927 97 aaKnown RBP8.95□□□□□ -0.98
SPIDR-227ENST00000541342 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
SPIDR-227ENST00000541342 LPAP08519 4548 aa8.93□□□□□ -0.98
SPIDR-227ENST00000541342 LRP2P98164 4655 aa8.89□□□□□ -0.99
SPIDR-227ENST00000541342 COX6B2Q6YFQ2 88 aa8.89□□□□□ -0.99
SPIDR-227ENST00000541342 TPRXLQ17RH7 258 aa8.85□□□□□ -0.99
SPIDR-227ENST00000541342 KRTAP3-3Q9BYR6 98 aa8.78□□□□□ -1
SPIDR-227ENST00000541342 KRTAP25-1Q3LHN0 102 aa8.77□□□□□ -1
SPIDR-227ENST00000541342 J3QL48 77 aa8.77□□□□□ -1.01
SPIDR-227ENST00000541342 KRTAP10-6P60371 365 aaPredicted RBP8.74□□□□□ -1.01
SPIDR-227ENST00000541342 KRTAP13-4Q3LI77 160 aa8.7□□□□□ -1.02
SPIDR-227ENST00000541342 PCLOQ9Y6V0 5065 aa8.69□□□□□ -1.02
SPIDR-227ENST00000541342 KRTAP3-2Q9BYR7 98 aa8.67□□□□□ -1.02
SPIDR-227ENST00000541342 CRIPTQ9P021 101 aa8.66□□□□□ -1.02
SPIDR-227ENST00000541342 K7ERS5 55 aa8.61□□□□□ -1.03
SPIDR-227ENST00000541342 HERC1Q15751 4861 aa8.58□□□□□ -1.04
SPIDR-227ENST00000541342 MUC17Q685J3 4493 aa8.57□□□□□ -1.04
SPIDR-227ENST00000541342 S4R3F8 94 aa8.55□□□□□ -1.04
SPIDR-227ENST00000541342 A0A0D9SG42 100 aa8.55□□□□□ -1.04
SPIDR-227ENST00000541342 ROMO1P60602 79 aa8.55□□□□□ -1.04
SPIDR-227ENST00000541342 P0C880 135 aa8.54□□□□□ -1.04
SPIDR-227ENST00000541342 SEC61BP60468 96 aaKnown RBP8.49□□□□□ -1.05
SPIDR-227ENST00000541342 HMCN2Q8NDA2 5059 aa8.47□□□□□ -1.05
SPIDR-227ENST00000541342 KRTAP4-1Q9BYQ7 146 aa8.46□□□□□ -1.05
SPIDR-227ENST00000541342 H3BS24 57 aa8.41□□□□□ -1.06
SPIDR-227ENST00000541342 KRTAP12-2P59991 146 aa8.4□□□□□ -1.07
SPIDR-227ENST00000541342 MUC2Q02817 5179 aa8.36□□□□□ -1.07
SPIDR-227ENST00000541342 C10orf95Q9H7T3 257 aa8.34□□□□□ -1.07
SPIDR-227ENST00000541342 KRTAP12-1P59990 96 aa8.31□□□□□ -1.08
SPIDR-227ENST00000541342 KRTAP19-2Q3LHN2 52 aa8.26□□□□□ -1.09
SPIDR-227ENST00000541342 SPINT4Q6UDR6 99 aa8.21□□□□□ -1.09
SPIDR-227ENST00000541342 M0QZ58 72 aa8.16□□□□□ -1.1
SPIDR-227ENST00000541342 FLGP20930 4061 aaPredicted RBP8.13□□□□□ -1.11
SPIDR-227ENST00000541342 UBR4Q5T4S7 5183 aa8.08□□□□□ -1.12
SPIDR-227ENST00000541342 KRTAP15-1Q3LI76 137 aa8.08□□□□□ -1.12
SPIDR-227ENST00000541342 RNF213Q63HN8 5207 aa8.04□□□□□ -1.12
SPIDR-227ENST00000541342 FAT4Q6V0I7 4981 aa7.99□□□□□ -1.13
SPIDR-227ENST00000541342 LCE2CQ5TA81 110 aa7.96□□□□□ -1.14
SPIDR-227ENST00000541342 LORP23490 312 aaPredicted RBP7.96□□□□□ -1.14
SPIDR-227ENST00000541342 R4GN34 69 aa7.93□□□□□ -1.14
SPIDR-227ENST00000541342 NDUFAF8A1L188 74 aa7.88□□□□□ -1.15
SPIDR-227ENST00000541342 MT1HP80294 61 aa7.76□□□□□ -1.17
SPIDR-227ENST00000541342 M0R2T5 61 aa7.66□□□□□ -1.18
SPIDR-227ENST00000541342 PLAC4Q8WY50 150 aa7.61□□□□□ -1.19
SPIDR-227ENST00000541342 CAMK2N1Q7Z7J9 78 aa7.52□□□□□ -1.21
SPIDR-227ENST00000541342 KRTAP9-8Q9BYQ0 159 aa7.52□□□□□ -1.21
SPIDR-227ENST00000541342 MT2AP02795 61 aa7.51□□□□□ -1.21
SPIDR-227ENST00000541342 MT1FP04733 61 aa7.49□□□□□ -1.21
SPIDR-227ENST00000541342 PP632Q6XCG6 107 aa7.47□□□□□ -1.21
SPIDR-227ENST00000541342 KRTAP19-1Q8IUB9 90 aa7.45□□□□□ -1.22
SPIDR-227ENST00000541342 SPRR2GQ9BYE4 73 aa7.45□□□□□ -1.22
SPIDR-227ENST00000541342 KRTAP10-10P60014 251 aa7.43□□□□□ -1.22
SPIDR-227ENST00000541342 LCE2AQ5TA79 106 aaPredicted RBP7.27□□□□□ -1.25
SPIDR-227ENST00000541342 TNP1P09430 55 aa7.27□□□□□ -1.25
SPIDR-227ENST00000541342 KRTAP9-3Q9BYQ3 159 aa7.23□□□□□ -1.25
SPIDR-227ENST00000541342 KRTAP23-1A1A580 65 aa7.21□□□□□ -1.25
SPIDR-227ENST00000541342 KRTAP19-8Q3LI54 63 aa7.2□□□□□ -1.26
SPIDR-227ENST00000541342 LUZP6Q538Z0 58 aa7.19□□□□□ -1.26
SPIDR-227ENST00000541342 SPRR5A0A1B0GTR4 108 aa7.14□□□□□ -1.27
SPIDR-227ENST00000541342 MT1BP07438 61 aa7.14□□□□□ -1.27
SPIDR-227ENST00000541342 LCE2BO14633 110 aa7.02□□□□□ -1.29
SPIDR-227ENST00000541342 KRTAP10-5P60370 271 aa6.97□□□□□ -1.29
SPIDR-227ENST00000541342 MT1XP80297 61 aa6.97□□□□□ -1.29
SPIDR-227ENST00000541342 LCE3AQ5TA76 89 aa6.96□□□□□ -1.29
SPIDR-227ENST00000541342 USH2AO75445 5202 aa6.92□□□□□ -1.3
SPIDR-227ENST00000541342 A0A0A0MQY5 61 aa6.9□□□□□ -1.31
SPIDR-227ENST00000541342 KRTAP8-1Q8IUC2 63 aa6.77□□□□□ -1.33
SPIDR-227ENST00000541342 PRO2289Q9P1D8 64 aa6.74□□□□□ -1.33
SPIDR-227ENST00000541342 KRTAP10-7P60409 375 aaPredicted RBP6.73□□□□□ -1.33
SPIDR-227ENST00000541342 KRTAP10-12P60413 245 aa6.64□□□□□ -1.35
SPIDR-227ENST00000541342 SSPOA2VEC9 5147 aa6.64□□□□□ -1.35
SPIDR-227ENST00000541342 KRTAP12-3P60328 96 aa6.59□□□□□ -1.35
SPIDR-227ENST00000541342 KMT2DO14686 5537 aa6.56□□□□□ -1.36
SPIDR-227ENST00000541342 FSIP2Q5CZC0 6907 aa6.53□□□□□ -1.36
SPIDR-227ENST00000541342 KRTAP19-6Q3LI70 58 aa6.46□□□□□ -1.38
SPIDR-227ENST00000541342 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
SPIDR-227ENST00000541342 KRTAP4-8A0A0G2JLE6 195 aa6.43□□□□□ -1.38
SPIDR-227ENST00000541342 KRTAP4-8Q9BYQ9 185 aa6.43□□□□□ -1.38
SPIDR-227ENST00000541342 KRTAP19-5Q3LI72 72 aa6.35□□□□□ -1.39
SPIDR-227ENST00000541342 FCGBPQ9Y6R7 5405 aaPredicted RBP6.27□□□□□ -1.41
SPIDR-227ENST00000541342 INE1O15225 51 aa6.27□□□□□ -1.41
SPIDR-227ENST00000541342 LCE3CQ5T5A8 94 aa6.23□□□□□ -1.41
SPIDR-227ENST00000541342 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
SPIDR-227ENST00000541342 KRTAP9-6A8MVA2 160 aa6.12□□□□□ -1.43
SPIDR-227ENST00000541342 KRTAP9-2Q9BYQ4 174 aa6.12□□□□□ -1.43
SPIDR-227ENST00000541342 MT1EP04732 61 aa6.07□□□□□ -1.44
SPIDR-227ENST00000541342 MT1LQ93083 61 aa5.99□□□□□ -1.45
SPIDR-227ENST00000541342 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
SPIDR-227ENST00000541342 MACF1Q9UPN3 7388 aaKnown RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms