RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 KRTAP10-8P60410 259 aa8.88□□□□□ -0.99
USP28-208ENST00000540438 SEC61GP60059 68 aa8.87□□□□□ -0.99
USP28-208ENST00000540438 KTN1-AS1Q86SY8 53 aa8.87□□□□□ -0.99
USP28-208ENST00000540438 SPATA8Q6RVD6 105 aa8.86□□□□□ -0.99
USP28-208ENST00000540438 XP32Q5T750 250 aa8.8□□□□□ -1
USP28-208ENST00000540438 KRTAP4-5Q9BYR2 181 aa8.8□□□□□ -1
USP28-208ENST00000540438 H0YAA0 97 aa8.76□□□□□ -1.01
USP28-208ENST00000540438 COX6B2Q6YFQ2 88 aa8.76□□□□□ -1.01
USP28-208ENST00000540438 RBM12B-AS1Q9P1G2 102 aa8.76□□□□□ -1.01
USP28-208ENST00000540438 MT1HL1P0DM35 61 aa8.74□□□□□ -1.01
USP28-208ENST00000540438 A0A1B0GU33 70 aa8.72□□□□□ -1.01
USP28-208ENST00000540438 RPL37P61927 97 aaKnown RBP8.7□□□□□ -1.02
USP28-208ENST00000540438 CRIPTQ9P021 101 aa8.68□□□□□ -1.02
USP28-208ENST00000540438 A0A0D9SG42 100 aa8.67□□□□□ -1.02
USP28-208ENST00000540438 MUC2Q02817 5179 aa8.65□□□□□ -1.03
USP28-208ENST00000540438 H1FX-AS1Q4G0G2 97 aa8.62□□□□□ -1.03
USP28-208ENST00000540438 KRTAP3-3Q9BYR6 98 aa8.62□□□□□ -1.03
USP28-208ENST00000540438 CSAG1Q6PB30 78 aa8.57□□□□□ -1.04
USP28-208ENST00000540438 KRTAP13-4Q3LI77 160 aa8.55□□□□□ -1.04
USP28-208ENST00000540438 P0C880 135 aa8.54□□□□□ -1.04
USP28-208ENST00000540438 S4R3F8 94 aa8.54□□□□□ -1.04
USP28-208ENST00000540438 HERC2O95714 4834 aa8.52□□□□□ -1.05
USP28-208ENST00000540438 KRTAP10-6P60371 365 aaPredicted RBP8.49□□□□□ -1.05
USP28-208ENST00000540438 KRTAP3-2Q9BYR7 98 aa8.43□□□□□ -1.06
USP28-208ENST00000540438 HERC1Q15751 4861 aa8.37□□□□□ -1.07
USP28-208ENST00000540438 J3QL48 77 aa8.36□□□□□ -1.07
USP28-208ENST00000540438 LINC01554Q52M75 96 aa8.33□□□□□ -1.08
USP28-208ENST00000540438 SPINT4Q6UDR6 99 aa8.32□□□□□ -1.08
USP28-208ENST00000540438 TPRXLQ17RH7 258 aa8.31□□□□□ -1.08
USP28-208ENST00000540438 KRTAP4-1Q9BYQ7 146 aa8.28□□□□□ -1.08
USP28-208ENST00000540438 K7ERS5 55 aa8.28□□□□□ -1.08
USP28-208ENST00000540438 KRTAP12-2P59991 146 aa8.23□□□□□ -1.09
USP28-208ENST00000540438 PCLOQ9Y6V0 5065 aa8.23□□□□□ -1.09
USP28-208ENST00000540438 C10orf95Q9H7T3 257 aa8.22□□□□□ -1.09
USP28-208ENST00000540438 MUC17Q685J3 4493 aa8.19□□□□□ -1.1
USP28-208ENST00000540438 FAT4Q6V0I7 4981 aa8.18□□□□□ -1.1
USP28-208ENST00000540438 RNF213Q63HN8 5207 aa8.16□□□□□ -1.1
USP28-208ENST00000540438 LORP23490 312 aaPredicted RBP8.14□□□□□ -1.11
USP28-208ENST00000540438 KRTAP25-1Q3LHN0 102 aa8.14□□□□□ -1.11
USP28-208ENST00000540438 ROMO1P60602 79 aa8.11□□□□□ -1.11
USP28-208ENST00000540438 M0QZ58 72 aa8.1□□□□□ -1.11
USP28-208ENST00000540438 KRTAP12-1P59990 96 aa8.06□□□□□ -1.12
USP28-208ENST00000540438 SEC61BP60468 96 aaKnown RBP8.06□□□□□ -1.12
USP28-208ENST00000540438 BIRC6Q9NR09 4857 aa8.05□□□□□ -1.12
USP28-208ENST00000540438 R4GN34 69 aa8.03□□□□□ -1.12
USP28-208ENST00000540438 UBR4Q5T4S7 5183 aa7.95□□□□□ -1.14
USP28-208ENST00000540438 HMCN2Q8NDA2 5059 aa7.89□□□□□ -1.15
USP28-208ENST00000540438 KRTAP19-2Q3LHN2 52 aa7.83□□□□□ -1.16
USP28-208ENST00000540438 FLGP20930 4061 aaPredicted RBP7.76□□□□□ -1.17
USP28-208ENST00000540438 CAMK2N1Q7Z7J9 78 aa7.67□□□□□ -1.18
USP28-208ENST00000540438 M0R2T5 61 aa7.63□□□□□ -1.19
USP28-208ENST00000540438 H3BS24 57 aa7.52□□□□□ -1.21
USP28-208ENST00000540438 LCE2CQ5TA81 110 aa7.51□□□□□ -1.21
USP28-208ENST00000540438 NDUFAF8A1L188 74 aa7.41□□□□□ -1.22
USP28-208ENST00000540438 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
USP28-208ENST00000540438 MT1HP80294 61 aa7.34□□□□□ -1.23
USP28-208ENST00000540438 KRTAP10-10P60014 251 aa7.33□□□□□ -1.24
USP28-208ENST00000540438 USH2AO75445 5202 aa7.27□□□□□ -1.25
USP28-208ENST00000540438 MT1FP04733 61 aa7.27□□□□□ -1.25
USP28-208ENST00000540438 KRTAP19-1Q8IUB9 90 aa7.26□□□□□ -1.25
USP28-208ENST00000540438 PLAC4Q8WY50 150 aa7.22□□□□□ -1.25
USP28-208ENST00000540438 MT2AP02795 61 aa7.2□□□□□ -1.26
USP28-208ENST00000540438 TNP1P09430 55 aa7.16□□□□□ -1.26
USP28-208ENST00000540438 KRTAP9-8Q9BYQ0 159 aa7.13□□□□□ -1.27
USP28-208ENST00000540438 SPRR2GQ9BYE4 73 aa7.1□□□□□ -1.27
USP28-208ENST00000540438 FSIP2Q5CZC0 6907 aa7.04□□□□□ -1.28
USP28-208ENST00000540438 KMT2DO14686 5537 aa7.04□□□□□ -1.28
USP28-208ENST00000540438 LCE3AQ5TA76 89 aa6.97□□□□□ -1.29
USP28-208ENST00000540438 PP632Q6XCG6 107 aa6.96□□□□□ -1.3
USP28-208ENST00000540438 MT1BP07438 61 aa6.9□□□□□ -1.31
USP28-208ENST00000540438 KRTAP10-5P60370 271 aa6.82□□□□□ -1.32
USP28-208ENST00000540438 MT1XP80297 61 aa6.82□□□□□ -1.32
USP28-208ENST00000540438 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
USP28-208ENST00000540438 KRTAP9-3Q9BYQ3 159 aa6.79□□□□□ -1.32
USP28-208ENST00000540438 KRTAP10-7P60409 375 aaPredicted RBP6.78□□□□□ -1.32
USP28-208ENST00000540438 KRTAP19-8Q3LI54 63 aa6.75□□□□□ -1.33
USP28-208ENST00000540438 LCE2BO14633 110 aa6.7□□□□□ -1.34
USP28-208ENST00000540438 KRTAP10-12P60413 245 aa6.64□□□□□ -1.35
USP28-208ENST00000540438 KRTAP23-1A1A580 65 aa6.56□□□□□ -1.36
USP28-208ENST00000540438 KRTAP4-8A0A0G2JLE6 195 aa6.55□□□□□ -1.36
USP28-208ENST00000540438 KRTAP4-8Q9BYQ9 185 aa6.55□□□□□ -1.36
USP28-208ENST00000540438 KRTAP12-3P60328 96 aa6.55□□□□□ -1.36
USP28-208ENST00000540438 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
USP28-208ENST00000540438 LCE2AQ5TA79 106 aaPredicted RBP6.47□□□□□ -1.37
USP28-208ENST00000540438 SPRR5A0A1B0GTR4 108 aa6.45□□□□□ -1.38
USP28-208ENST00000540438 PRO2289Q9P1D8 64 aa6.43□□□□□ -1.38
USP28-208ENST00000540438 SSPOA2VEC9 5147 aa6.43□□□□□ -1.38
USP28-208ENST00000540438 KRTAP19-5Q3LI72 72 aa6.42□□□□□ -1.38
USP28-208ENST00000540438 KRTAP4-7Q9BYR0 210 aa6.28□□□□□ -1.4
USP28-208ENST00000540438 A0A0A0MQY5 61 aa6.26□□□□□ -1.41
USP28-208ENST00000540438 DSTQ03001 7570 aaKnown RBP6.26□□□□□ -1.41
USP28-208ENST00000540438 MUC12Q9UKN1 5478 aa6.22□□□□□ -1.41
USP28-208ENST00000540438 FCGBPQ9Y6R7 5405 aaPredicted RBP6.19□□□□□ -1.42
USP28-208ENST00000540438 LCE3CQ5T5A8 94 aa6.09□□□□□ -1.43
USP28-208ENST00000540438 KRTAP19-7Q3SYF9 63 aa6.07□□□□□ -1.44
USP28-208ENST00000540438 KRTAP9-6A8MVA2 160 aa6.07□□□□□ -1.44
USP28-208ENST00000540438 KRTAP4-3Q9BYR4 195 aa5.93□□□□□ -1.46
USP28-208ENST00000540438 MACF1Q9UPN3 7388 aaKnown RBP5.9□□□□□ -1.46
USP28-208ENST00000540438 SYNE2Q8WXH0 6885 aaKnown RBP5.88□□□□□ -1.47
USP28-208ENST00000540438 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms