RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 MT1LQ93083 61 aa-0.75□□□□□ -2.53
VPS13A-213ENST00000539950 DUOX2Q9NRD8 1548 aa-0.75□□□□□ -2.53
VPS13A-213ENST00000539950 SRCAPQ6ZRS2 3230 aa-0.76□□□□□ -2.53
VPS13A-213ENST00000539950 FCER1GP30273 86 aa-0.76□□□□□ -2.53
VPS13A-213ENST00000539950 DNAH7Q8WXX0 4024 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 GLI2P10070 1586 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 K7EMI3 77 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 M0QZ58 72 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 HILPDAQ9Y5L2 63 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 DNAH17Q9UFH2 4485 aa-0.77□□□□□ -2.53
VPS13A-213ENST00000539950 CROCC2H7BZ55 1655 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 MGAQ8IWI9 3026 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 A8MTW9 85 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 M0QY20 66 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 SFTA3P0C7M3 94 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 LRBAP50851 2863 aa-0.78□□□□□ -2.53
VPS13A-213ENST00000539950 MT1HL1P0DM35 61 aa-0.79□□□□□ -2.54
VPS13A-213ENST00000539950 EYSQ5T1H1 3165 aa-0.79□□□□□ -2.54
VPS13A-213ENST00000539950 ABCA6Q8N139 1617 aa-0.79□□□□□ -2.54
VPS13A-213ENST00000539950 PDCD5O14737 125 aa-0.8□□□□□ -2.54
VPS13A-213ENST00000539950 SMCO4Q9NRQ5 59 aa-0.8□□□□□ -2.54
VPS13A-213ENST00000539950 ADGRG4Q8IZF6 3080 aa-0.8□□□□□ -2.54
VPS13A-213ENST00000539950 COL6A5A8TX70 2615 aa-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 DNAH10Q8IVF4 4471 aa-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 MYO9AB2RTY4 2548 aa-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 LINC01549A6NIU2 74 aa-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 A0A1B0GUL6 1792 aa-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 SPTAN1Q13813 2472 aaKnown RBP-0.81□□□□□ -2.54
VPS13A-213ENST00000539950 GNG13Q9P2W3 67 aa-0.82□□□□□ -2.54
VPS13A-213ENST00000539950 CEP295Q9C0D2 2601 aa-0.83□□□□□ -2.54
VPS13A-213ENST00000539950 EFCAB5A4FU69 1503 aa-0.83□□□□□ -2.54
VPS13A-213ENST00000539950 IGIPA6NJ69 53 aa-0.83□□□□□ -2.54
VPS13A-213ENST00000539950 ALS2Q96Q42 1657 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 CFAP46Q8IYW2 2715 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 KIF21BO75037 1637 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 LINC01546A6NGU7 62 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 MT1MQ8N339 61 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 TMEM167BQ9NRX6 74 aa-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 FAM208AQ9UK61 1670 aaKnown RBP-0.84□□□□□ -2.54
VPS13A-213ENST00000539950 PREX2Q70Z35 1606 aa-0.85□□□□□ -2.55
VPS13A-213ENST00000539950 M0R1W7 72 aa-0.85□□□□□ -2.55
VPS13A-213ENST00000539950 SERF2P84101 59 aa-0.85□□□□□ -2.55
VPS13A-213ENST00000539950 EEA1Q15075 1411 aa-0.86□□□□□ -2.55
VPS13A-213ENST00000539950 MT2AP02795 61 aa-0.86□□□□□ -2.55
VPS13A-213ENST00000539950 LINC00308Q8TCZ7 52 aa-0.86□□□□□ -2.55
VPS13A-213ENST00000539950 DNAH5Q8TE73 4624 aa-0.86□□□□□ -2.55
VPS13A-213ENST00000539950 CSMD2Q7Z408 3487 aa-0.87□□□□□ -2.55
VPS13A-213ENST00000539950 SMG1Q96Q15 3661 aaKnown RBP-0.87□□□□□ -2.55
VPS13A-213ENST00000539950 MT1GP13640 62 aa-0.87□□□□□ -2.55
VPS13A-213ENST00000539950 NMES1Q9C002 83 aa-0.87□□□□□ -2.55
VPS13A-213ENST00000539950 KAAG1Q9UBP8 84 aa-0.87□□□□□ -2.55
VPS13A-213ENST00000539950 A0A087WWC5 75 aa-0.88□□□□□ -2.55
VPS13A-213ENST00000539950 ABRACLQ9P1F3 81 aa-0.88□□□□□ -2.55
VPS13A-213ENST00000539950 ABCA10Q8WWZ4 1543 aa-0.89□□□□□ -2.55
VPS13A-213ENST00000539950 CCDC180Q9P1Z9 1646 aa-0.89□□□□□ -2.55
VPS13A-213ENST00000539950 TRRAPQ9Y4A5 3859 aa-0.89□□□□□ -2.55
VPS13A-213ENST00000539950 SMIM27A0A1W2PRY6 76 aa-0.89□□□□□ -2.55
VPS13A-213ENST00000539950 SPART-AS1P0CW21 52 aa-0.9□□□□□ -2.55
VPS13A-213ENST00000539950 H0YGX0 51 aa-0.91□□□□□ -2.56
VPS13A-213ENST00000539950 EFCAB6Q5THR3 1501 aa-0.91□□□□□ -2.56
VPS13A-213ENST00000539950 ITPR2Q14571 2701 aa-0.91□□□□□ -2.56
VPS13A-213ENST00000539950 LMO7Q8WWI1 1683 aa-0.91□□□□□ -2.56
VPS13A-213ENST00000539950 UGGT1Q9NYU2 1555 aa-0.91□□□□□ -2.56
VPS13A-213ENST00000539950 DMXL2Q8TDJ6 3036 aa-0.92□□□□□ -2.56
VPS13A-213ENST00000539950 MT1BP07438 61 aa-0.93□□□□□ -2.56
VPS13A-213ENST00000539950 DEFB131AP59861 70 aa-0.93□□□□□ -2.56
VPS13A-213ENST00000539950 WFDC10BQ8IUB3 73 aa-0.93□□□□□ -2.56
VPS13A-213ENST00000539950 AGLP35573 1532 aa-0.94□□□□□ -2.56
VPS13A-213ENST00000539950 SYCP2Q9BX26 1530 aa-0.94□□□□□ -2.56
VPS13A-213ENST00000539950 CPS1P31327 1500 aa-0.94□□□□□ -2.56
VPS13A-213ENST00000539950 ABCA5Q8WWZ7 1642 aa-0.95□□□□□ -2.56
VPS13A-213ENST00000539950 LEAP2Q969E1 77 aa-0.95□□□□□ -2.56
VPS13A-213ENST00000539950 ZFHX4Q86UP3 3567 aa-0.95□□□□□ -2.56
VPS13A-213ENST00000539950 ABCA13Q86UQ4 5058 aa-0.96□□□□□ -2.56
VPS13A-213ENST00000539950 S100ZQ8WXG8 99 aa-0.96□□□□□ -2.56
VPS13A-213ENST00000539950 MYO15AQ9UKN7 3530 aa-0.97□□□□□ -2.56
VPS13A-213ENST00000539950 DEFB4AO15263 64 aa-0.97□□□□□ -2.56
VPS13A-213ENST00000539950 CFAP54Q96N23 3096 aa-0.97□□□□□ -2.56
VPS13A-213ENST00000539950 CRYBG3Q68DQ2 2970 aa-0.97□□□□□ -2.57
VPS13A-213ENST00000539950 TLN1Q9Y490 2541 aaKnown RBP-0.98□□□□□ -2.57
VPS13A-213ENST00000539950 POLR2KP53803 58 aaKnown RBP-0.98□□□□□ -2.57
VPS13A-213ENST00000539950 DEFB136Q30KP8 78 aa-0.98□□□□□ -2.57
VPS13A-213ENST00000539950 ADCY10Q96PN6 1610 aa-0.98□□□□□ -2.57
VPS13A-213ENST00000539950 MROH2AA6NES4 1674 aa-0.98□□□□□ -2.57
VPS13A-213ENST00000539950 PRXQ9BXM0 1461 aa-0.99□□□□□ -2.57
VPS13A-213ENST00000539950 PRUNE2Q8WUY3 3088 aa-0.99□□□□□ -2.57
VPS13A-213ENST00000539950 ATMQ13315 3056 aa-0.99□□□□□ -2.57
VPS13A-213ENST00000539950 FREM2Q5SZK8 3169 aa-0.99□□□□□ -2.57
VPS13A-213ENST00000539950 NRXN3Q9Y4C0 1643 aa-1□□□□□ -2.57
VPS13A-213ENST00000539950 PLNP26678 52 aa-1□□□□□ -2.57
VPS13A-213ENST00000539950 SMIM5Q71RC9 77 aa-1.01□□□□□ -2.57
VPS13A-213ENST00000539950 TRPM2O94759 1503 aa-1.01□□□□□ -2.57
VPS13A-213ENST00000539950 ABCC8Q09428 1581 aa-1.03□□□□□ -2.57
VPS13A-213ENST00000539950 FANCD2Q9BXW9 1451 aa-1.03□□□□□ -2.57
VPS13A-213ENST00000539950 TFF3Q07654 80 aa-1.03□□□□□ -2.57
VPS13A-213ENST00000539950 SMIM2Q9BVW6 85 aa-1.03□□□□□ -2.57
VPS13A-213ENST00000539950 IQGAP1P46940 1657 aa-1.04□□□□□ -2.58
VPS13A-213ENST00000539950 NFAT5O94916 1531 aa-1.05□□□□□ -2.58
VPS13A-213ENST00000539950 FRYLO94915 3013 aa-1.05□□□□□ -2.58
VPS13A-213ENST00000539950 VPS13CQ709C8 3753 aa-1.06□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms