RNA–Protein interactions for RNA: ENST00000539680.1

ECHDC2-222, Transcript of enoyl-CoA hydratase domain containing 2, human

Gene ECHDC2, Length 5,817 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-222	ENST00000539680	SVEP1	Q4LDE5	3571 aa		3.6	□□□□□ -1.83
ECHDC2-222	ENST00000539680	PKD1L1	Q8TDX9	2849 aa		3.6	□□□□□ -1.83
ECHDC2-222	ENST00000539680	KRTAP9-2	Q9BYQ4	174 aa		3.6	□□□□□ -1.83
ECHDC2-222	ENST00000539680	MT1H	P80294	61 aa		3.58	□□□□□ -1.84
ECHDC2-222	ENST00000539680	CELSR1	Q9NYQ6	3014 aa		3.57	□□□□□ -1.84
ECHDC2-222	ENST00000539680	VWF	P04275	2813 aa		3.56	□□□□□ -1.84
ECHDC2-222	ENST00000539680	SPRR2G	Q9BYE4	73 aa		3.56	□□□□□ -1.84
ECHDC2-222	ENST00000539680	DNAH1	Q9P2D7	4330 aa		3.54	□□□□□ -1.84
ECHDC2-222	ENST00000539680	CUBN	O60494	3623 aa		3.53	□□□□□ -1.84
ECHDC2-222	ENST00000539680	LCE2D	Q5TA82	110 aa	Predicted RBP	3.52	□□□□□ -1.85
ECHDC2-222	ENST00000539680	KRTAP10-7	P60409	375 aa	Predicted RBP	3.51	□□□□□ -1.85
ECHDC2-222	ENST00000539680	MT2A	P02795	61 aa		3.5	□□□□□ -1.85
ECHDC2-222	ENST00000539680	DNAH9	Q9NYC9	4486 aa		3.48	□□□□□ -1.85
ECHDC2-222	ENST00000539680	DNAH10	Q8IVF4	4471 aa		3.48	□□□□□ -1.85
ECHDC2-222	ENST00000539680	CMYA5	Q8N3K9	4069 aa		3.47	□□□□□ -1.85
ECHDC2-222	ENST00000539680	KRTAP4-1	Q9BYQ7	146 aa		3.47	□□□□□ -1.85
ECHDC2-222	ENST00000539680	LCE3C	Q5T5A8	94 aa		3.46	□□□□□ -1.86
ECHDC2-222	ENST00000539680	ZNF469	Q96JG9	3925 aa	Predicted RBP	3.46	□□□□□ -1.86
ECHDC2-222	ENST00000539680	CSMD2	Q7Z408	3487 aa		3.46	□□□□□ -1.86
ECHDC2-222	ENST00000539680	FAT3	Q8TDW7	4589 aa		3.44	□□□□□ -1.86
ECHDC2-222	ENST00000539680	KRTAP19-5	Q3LI72	72 aa		3.44	□□□□□ -1.86
ECHDC2-222	ENST00000539680	ANK2	Q01484	3957 aa		3.44	□□□□□ -1.86
ECHDC2-222	ENST00000539680	LRP1B	Q9NZR2	4599 aa		3.42	□□□□□ -1.86
ECHDC2-222	ENST00000539680	SPRR2F	Q96RM1	72 aa		3.42	□□□□□ -1.86
ECHDC2-222	ENST00000539680	TRRAP	Q9Y4A5	3859 aa		3.41	□□□□□ -1.86
ECHDC2-222	ENST00000539680	DNAH11	Q96DT5	4516 aa		3.4	□□□□□ -1.86
ECHDC2-222	ENST00000539680	DYNC2H1	Q8NCM8	4307 aa	Known RBP	3.4	□□□□□ -1.87
ECHDC2-222	ENST00000539680	DYNC1H1	Q14204	4646 aa	Known RBP	3.4	□□□□□ -1.87
ECHDC2-222	ENST00000539680	DNAH3	Q8TD57	4116 aa		3.4	□□□□□ -1.87
ECHDC2-222	ENST00000539680	MT1F	P04733	61 aa		3.39	□□□□□ -1.87
ECHDC2-222	ENST00000539680	DNHD1	Q96M86	4753 aa		3.38	□□□□□ -1.87
ECHDC2-222	ENST00000539680	KRTAP9-7	A8MTY7	169 aa		3.37	□□□□□ -1.87
ECHDC2-222	ENST00000539680	MEGF8	Q7Z7M0	2845 aa		3.36	□□□□□ -1.87
ECHDC2-222	ENST00000539680	DNAH17	Q9UFH2	4485 aa		3.36	□□□□□ -1.87
ECHDC2-222	ENST00000539680	DNAH6	Q9C0G6	4158 aa		3.35	□□□□□ -1.87
ECHDC2-222	ENST00000539680	PCLO	Q9Y6V0	5065 aa		3.33	□□□□□ -1.88
ECHDC2-222	ENST00000539680	RYR3	Q15413	4870 aa		3.32	□□□□□ -1.88
ECHDC2-222	ENST00000539680	DNAH5	Q8TE73	4624 aa		3.31	□□□□□ -1.88
ECHDC2-222	ENST00000539680	VPS13D	Q5THJ4	4388 aa		3.3	□□□□□ -1.88
ECHDC2-222	ENST00000539680	SRRM2	Q9UQ35	2752 aa	Known RBP	3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	HERC2	O95714	4834 aa		3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	SPRR2E	P22531	72 aa		3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	SPRR2B	P35325	72 aa		3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	SPRR2A	P35326	72 aa		3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	KRTAP19-8	Q3LI54	63 aa		3.29	□□□□□ -1.88
ECHDC2-222	ENST00000539680	HERC1	Q15751	4861 aa		3.28	□□□□□ -1.88
ECHDC2-222	ENST00000539680	LCE2C	Q5TA81	110 aa		3.27	□□□□□ -1.89
ECHDC2-222	ENST00000539680	RYR2	Q92736	4967 aa		3.27	□□□□□ -1.89
ECHDC2-222	ENST00000539680	PLEC	Q15149	4684 aa	Known RBP	3.26	□□□□□ -1.89
ECHDC2-222	ENST00000539680	FAT2	Q9NYQ8	4349 aa		3.26	□□□□□ -1.89
ECHDC2-222	ENST00000539680	SACS	Q9NZJ4	4579 aa		3.26	□□□□□ -1.89
ECHDC2-222	ENST00000539680	DNAH8	Q96JB1	4490 aa		3.26	□□□□□ -1.89
ECHDC2-222	ENST00000539680	KRTAP20-1	Q3LI63	56 aa		3.25	□□□□□ -1.89
ECHDC2-222	ENST00000539680	COL7A1	Q02388	2944 aa		3.25	□□□□□ -1.89
ECHDC2-222	ENST00000539680	SPRR5	A0A1B0GTR4	108 aa		3.24	□□□□□ -1.89
ECHDC2-222	ENST00000539680	CSMD3	Q7Z407	3707 aa		3.24	□□□□□ -1.89
ECHDC2-222	ENST00000539680	HSPG2	P98160	4391 aa		3.22	□□□□□ -1.89
ECHDC2-222	ENST00000539680	DNAH7	Q8WXX0	4024 aa		3.22	□□□□□ -1.89
ECHDC2-222	ENST00000539680	PRKDC	P78527	4128 aa	Known RBP	3.21	□□□□□ -1.9
ECHDC2-222	ENST00000539680	MYCBP2	O75592	4640 aa		3.21	□□□□□ -1.9
ECHDC2-222	ENST00000539680	SPRR2D	P22532	72 aa		3.2	□□□□□ -1.9
ECHDC2-222	ENST00000539680	LYST	Q99698	3801 aa		3.18	□□□□□ -1.9
ECHDC2-222	ENST00000539680	LCE2B	O14633	110 aa		3.17	□□□□□ -1.9
ECHDC2-222	ENST00000539680	KRTAP12-4	P60329	112 aa		3.15	□□□□□ -1.9
ECHDC2-222	ENST00000539680	STARD9	Q9P2P6	4700 aa		3.15	□□□□□ -1.91
ECHDC2-222	ENST00000539680	MT1X	P80297	61 aa		3.15	□□□□□ -1.91
ECHDC2-222	ENST00000539680	LCE3B	Q5TA77	95 aa		3.14	□□□□□ -1.91
ECHDC2-222	ENST00000539680	KMT2C	Q8NEZ4	4911 aa	Known RBP	3.14	□□□□□ -1.91
ECHDC2-222	ENST00000539680	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.13	□□□□□ -1.91
ECHDC2-222	ENST00000539680	KRTAP19-1	Q8IUB9	90 aa		3.13	□□□□□ -1.91
ECHDC2-222	ENST00000539680	MT1G	P13640	62 aa		3.12	□□□□□ -1.91
ECHDC2-222	ENST00000539680	KRTAP6-3	Q3LI67	103 aa		3.12	□□□□□ -1.91
ECHDC2-222	ENST00000539680	KIAA1109	Q2LD37	5005 aa		3.09	□□□□□ -1.91
ECHDC2-222	ENST00000539680	RYR1	P21817	5038 aa		3.09	□□□□□ -1.92
ECHDC2-222	ENST00000539680	APOB	P04114	4563 aa	Known RBP	3.08	□□□□□ -1.92
ECHDC2-222	ENST00000539680	FAT1	Q14517	4588 aa		3.08	□□□□□ -1.92
ECHDC2-222	ENST00000539680	FRAS1	Q86XX4	4008 aa		3.08	□□□□□ -1.92
ECHDC2-222	ENST00000539680	MT1B	P07438	61 aa		3.08	□□□□□ -1.92
ECHDC2-222	ENST00000539680	LRP1	Q07954	4544 aa	Known RBP	3.07	□□□□□ -1.92
ECHDC2-222	ENST00000539680	KRTAP2-3	P0C7H8	128 aa		3.06	□□□□□ -1.92
ECHDC2-222	ENST00000539680	KRTAP2-4	Q9BYR9	128 aa		3.06	□□□□□ -1.92
ECHDC2-222	ENST00000539680	HECTD4	Q9Y4D8	3996 aa		3.05	□□□□□ -1.92
ECHDC2-222	ENST00000539680	LCE2A	Q5TA79	106 aa	Predicted RBP	3.04	□□□□□ -1.92
ECHDC2-222	ENST00000539680	LCE3D	Q9BYE3	92 aa		3.04	□□□□□ -1.92
ECHDC2-222	ENST00000539680	KRTAP9-8	Q9BYQ0	159 aa		3.03	□□□□□ -1.92
ECHDC2-222	ENST00000539680	PKHD1L1	Q86WI1	4243 aa		3.02	□□□□□ -1.93
ECHDC2-222	ENST00000539680	LCE3E	Q5T5B0	92 aa		3.01	□□□□□ -1.93
ECHDC2-222	ENST00000539680	KRTAP9-3	Q9BYQ3	159 aa		3	□□□□□ -1.93
ECHDC2-222	ENST00000539680	KMT2A	Q03164	3969 aa		2.96	□□□□□ -1.93
ECHDC2-222	ENST00000539680	KRTAP19-3	Q7Z4W3	81 aa		2.96	□□□□□ -1.93
ECHDC2-222	ENST00000539680	VPS13B	Q7Z7G8	4022 aa		2.95	□□□□□ -1.94
ECHDC2-222	ENST00000539680	MUC17	Q685J3	4493 aa		2.94	□□□□□ -1.94
ECHDC2-222	ENST00000539680	MT1L	Q93083	61 aa		2.94	□□□□□ -1.94
ECHDC2-222	ENST00000539680	KRTAP4-8	A0A0G2JLE6	195 aa		2.91	□□□□□ -1.94
ECHDC2-222	ENST00000539680	KRTAP4-8	Q9BYQ9	185 aa		2.91	□□□□□ -1.94
ECHDC2-222	ENST00000539680	PKD1	P98161	4303 aa		2.9	□□□□□ -1.94
ECHDC2-222	ENST00000539680	ABCA13	Q86UQ4	5058 aa		2.9	□□□□□ -1.95
ECHDC2-222	ENST00000539680	KRTAP2-2	Q9BYT5	123 aa		2.88	□□□□□ -1.95
ECHDC2-222	ENST00000539680	KRTAP2-1	Q9BYU5	128 aa		2.88	□□□□□ -1.95
ECHDC2-222	ENST00000539680	PKHD1	P08F94	4074 aa		2.88	□□□□□ -1.95

Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms