RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CYP4F30PQ9H0H9 118 aa6.31□□□□□ -1.4
CLSTN3-208ENST00000538933 RBM12B-AS1Q9P1G2 102 aa6.31□□□□□ -1.4
CLSTN3-208ENST00000538933 FAM236DA0A1B0GTK5 79 aa6.3□□□□□ -1.4
CLSTN3-208ENST00000538933 FAM236CP0DP71 79 aa6.3□□□□□ -1.4
CLSTN3-208ENST00000538933 COX7CP15954 63 aa6.3□□□□□ -1.4
CLSTN3-208ENST00000538933 KRTAP19-6Q3LI70 58 aa6.3□□□□□ -1.4
CLSTN3-208ENST00000538933 C20orf197Q8N268 126 aa6.29□□□□□ -1.4
CLSTN3-208ENST00000538933 HRES1P13985 223 aa6.27□□□□□ -1.41
CLSTN3-208ENST00000538933 SNURFQ9Y675 71 aa6.27□□□□□ -1.41
CLSTN3-208ENST00000538933 C4orf26Q17RF5 130 aa6.23□□□□□ -1.41
CLSTN3-208ENST00000538933 KLKP1Q107X0 134 aa6.22□□□□□ -1.41
CLSTN3-208ENST00000538933 KRTAP10-10P60014 251 aa6.2□□□□□ -1.42
CLSTN3-208ENST00000538933 MUC12Q9UKN1 5478 aa6.2□□□□□ -1.42
CLSTN3-208ENST00000538933 MPLKIPQ8TAP9 179 aa6.18□□□□□ -1.42
CLSTN3-208ENST00000538933 CCDC179H3BU77 68 aa6.16□□□□□ -1.42
CLSTN3-208ENST00000538933 NDUFC1O43677 76 aa6.16□□□□□ -1.42
CLSTN3-208ENST00000538933 KRTAP20-1Q3LI63 56 aa6.14□□□□□ -1.43
CLSTN3-208ENST00000538933 H1FX-AS1Q4G0G2 97 aa6.12□□□□□ -1.43
CLSTN3-208ENST00000538933 A8MUN3 132 aa6.11□□□□□ -1.43
CLSTN3-208ENST00000538933 SPANXA2-OT1Q8N9U9 137 aa6.09□□□□□ -1.43
CLSTN3-208ENST00000538933 H7BZZ5 65 aa6.07□□□□□ -1.44
CLSTN3-208ENST00000538933 CYSTM1Q9H1C7 97 aa6.07□□□□□ -1.44
CLSTN3-208ENST00000538933 PCP4P48539 62 aa6.06□□□□□ -1.44
CLSTN3-208ENST00000538933 DMAC1Q96GE9 116 aa6.06□□□□□ -1.44
CLSTN3-208ENST00000538933 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
CLSTN3-208ENST00000538933 ACYP2P14621 99 aa6.05□□□□□ -1.44
CLSTN3-208ENST00000538933 S4R3F8 94 aa6.05□□□□□ -1.44
CLSTN3-208ENST00000538933 CHKB-CPT1BH3BT56 60 aa6□□□□□ -1.45
CLSTN3-208ENST00000538933 ATP5EP56381 51 aaPredicted RBP5.98□□□□□ -1.45
CLSTN3-208ENST00000538933 TMEM258P61165 79 aa5.98□□□□□ -1.45
CLSTN3-208ENST00000538933 MDN1Q9NU22 5596 aa5.98□□□□□ -1.45
CLSTN3-208ENST00000538933 LCA10Q71F78 164 aa5.97□□□□□ -1.45
CLSTN3-208ENST00000538933 CSAG1Q6PB30 78 aa5.95□□□□□ -1.46
CLSTN3-208ENST00000538933 SPTSSBQ8NFR3 76 aa5.93□□□□□ -1.46
CLSTN3-208ENST00000538933 KMT2DO14686 5537 aa5.93□□□□□ -1.46
CLSTN3-208ENST00000538933 COA5Q86WW8 74 aa5.92□□□□□ -1.46
CLSTN3-208ENST00000538933 KRTAP5-9P26371 169 aa5.86□□□□□ -1.47
CLSTN3-208ENST00000538933 KRTAP3-3Q9BYR6 98 aa5.86□□□□□ -1.47
CLSTN3-208ENST00000538933 KRTAP2-3P0C7H8 128 aa5.85□□□□□ -1.47
CLSTN3-208ENST00000538933 KRTAP2-4Q9BYR9 128 aa5.85□□□□□ -1.47
CLSTN3-208ENST00000538933 SERP1Q9Y6X1 66 aa5.79□□□□□ -1.48
CLSTN3-208ENST00000538933 ADM2Q7Z4H4 148 aa5.74□□□□□ -1.49
CLSTN3-208ENST00000538933 A6NN06 94 aa5.73□□□□□ -1.49
CLSTN3-208ENST00000538933 SEC61GP60059 68 aa5.73□□□□□ -1.49
CLSTN3-208ENST00000538933 H0YAA0 97 aa5.72□□□□□ -1.49
CLSTN3-208ENST00000538933 A0A1B0GU69 56 aa5.65□□□□□ -1.5
CLSTN3-208ENST00000538933 MT1BP07438 61 aa5.65□□□□□ -1.5
CLSTN3-208ENST00000538933 RPS28P62857 69 aaKnown RBP5.63□□□□□ -1.51
CLSTN3-208ENST00000538933 PRR15LQ9BU68 103 aa5.63□□□□□ -1.51
CLSTN3-208ENST00000538933 P0C880 135 aa5.62□□□□□ -1.51
CLSTN3-208ENST00000538933 KRTAP10-5P60370 271 aa5.62□□□□□ -1.51
CLSTN3-208ENST00000538933 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
CLSTN3-208ENST00000538933 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
CLSTN3-208ENST00000538933 SMIM26A0A096LP01 95 aa5.61□□□□□ -1.51
CLSTN3-208ENST00000538933 CRIPTQ9P021 101 aa5.61□□□□□ -1.51
CLSTN3-208ENST00000538933 GPR98Q8WXG9 6306 aa5.61□□□□□ -1.51
CLSTN3-208ENST00000538933 V9GYY9 64 aa5.6□□□□□ -1.51
CLSTN3-208ENST00000538933 KRTAP3-2Q9BYR7 98 aa5.59□□□□□ -1.51
CLSTN3-208ENST00000538933 LINC01558Q9Y6Z2 57 aa5.59□□□□□ -1.51
CLSTN3-208ENST00000538933 R4GN34 69 aa5.58□□□□□ -1.52
CLSTN3-208ENST00000538933 M0QZ58 72 aa5.55□□□□□ -1.52
CLSTN3-208ENST00000538933 SPRR2EP22531 72 aa5.54□□□□□ -1.52
CLSTN3-208ENST00000538933 SPRR2BP35325 72 aa5.54□□□□□ -1.52
CLSTN3-208ENST00000538933 SPRR2AP35326 72 aa5.54□□□□□ -1.52
CLSTN3-208ENST00000538933 KRTAP19-8Q3LI54 63 aa5.54□□□□□ -1.52
CLSTN3-208ENST00000538933 A0A1B0GU33 70 aa5.52□□□□□ -1.53
CLSTN3-208ENST00000538933 Q1T7F1 81 aa5.52□□□□□ -1.53
CLSTN3-208ENST00000538933 Q5VV11 94 aa5.52□□□□□ -1.53
CLSTN3-208ENST00000538933 PSPHP1O15172 72 aa5.48□□□□□ -1.53
CLSTN3-208ENST00000538933 LINC01554Q52M75 96 aa5.48□□□□□ -1.53
CLSTN3-208ENST00000538933 SPRR2FQ96RM1 72 aa5.48□□□□□ -1.53
CLSTN3-208ENST00000538933 SPRR2GQ9BYE4 73 aa5.47□□□□□ -1.53
CLSTN3-208ENST00000538933 LCE1AQ5T7P2 110 aa5.45□□□□□ -1.54
CLSTN3-208ENST00000538933 UQCR11O14957 56 aa5.42□□□□□ -1.54
CLSTN3-208ENST00000538933 SPATA8Q6RVD6 105 aa5.42□□□□□ -1.54
CLSTN3-208ENST00000538933 KRTAP13-4Q3LI77 160 aa5.4□□□□□ -1.54
CLSTN3-208ENST00000538933 A0A0D9SG42 100 aa5.38□□□□□ -1.55
CLSTN3-208ENST00000538933 SPRR2DP22532 72 aa5.36□□□□□ -1.55
CLSTN3-208ENST00000538933 PLAC4Q8WY50 150 aa5.36□□□□□ -1.55
CLSTN3-208ENST00000538933 A6NED7 52 aa5.35□□□□□ -1.55
CLSTN3-208ENST00000538933 MIR22HGQ0VDD5 57 aa5.33□□□□□ -1.56
CLSTN3-208ENST00000538933 A8MU10 97 aa5.3□□□□□ -1.56
CLSTN3-208ENST00000538933 SPINT4Q6UDR6 99 aa5.3□□□□□ -1.56
CLSTN3-208ENST00000538933 LCE3BQ5TA77 95 aa5.28□□□□□ -1.56
CLSTN3-208ENST00000538933 KRTAP8-1Q8IUC2 63 aa5.26□□□□□ -1.57
CLSTN3-208ENST00000538933 CAMK2N1Q7Z7J9 78 aa5.23□□□□□ -1.57
CLSTN3-208ENST00000538933 K7ERS5 55 aa5.22□□□□□ -1.57
CLSTN3-208ENST00000538933 DSTQ03001 7570 aaKnown RBP5.22□□□□□ -1.57
CLSTN3-208ENST00000538933 KRTAP12-1P59990 96 aa5.21□□□□□ -1.58
CLSTN3-208ENST00000538933 KRTAP12-2P59991 146 aa5.18□□□□□ -1.58
CLSTN3-208ENST00000538933 CDC42SE1Q9NRR8 79 aa5.18□□□□□ -1.58
CLSTN3-208ENST00000538933 PRO2289Q9P1D8 64 aa5.17□□□□□ -1.58
CLSTN3-208ENST00000538933 MT1XP80297 61 aa5.15□□□□□ -1.59
CLSTN3-208ENST00000538933 KRTAP4-8A0A0G2JLE6 195 aa5.13□□□□□ -1.59
CLSTN3-208ENST00000538933 KRTAP4-8Q9BYQ9 185 aa5.13□□□□□ -1.59
CLSTN3-208ENST00000538933 BRK1Q8WUW1 75 aa5.11□□□□□ -1.59
CLSTN3-208ENST00000538933 KRTAP4-9Q9BYQ8 210 aa5.1□□□□□ -1.59
CLSTN3-208ENST00000538933 HMCN1Q96RW7 5635 aa4.99□□□□□ -1.61
CLSTN3-208ENST00000538933 AHNAK2Q8IVF2 5795 aa4.97□□□□□ -1.61
CLSTN3-208ENST00000538933 C10orf95Q9H7T3 257 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms