RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 LOC101927531A0A1B0GV80 90 aa6.79□□□□□ -1.32
USP28-204ENST00000537642 FAM236AA0A1B0GUQ0 79 aa6.76□□□□□ -1.33
USP28-204ENST00000537642 FAM236BA0A1B0GV22 79 aa6.76□□□□□ -1.33
USP28-204ENST00000537642 UQCRQO14949 82 aa6.76□□□□□ -1.33
USP28-204ENST00000537642 MACF1Q9UPN3 7388 aaKnown RBP6.75□□□□□ -1.33
USP28-204ENST00000537642 A0A087WVE0 104 aa6.75□□□□□ -1.33
USP28-204ENST00000537642 H0Y9P7 68 aa6.73□□□□□ -1.33
USP28-204ENST00000537642 CCDC179H3BU77 68 aa6.72□□□□□ -1.33
USP28-204ENST00000537642 ATOX1O00244 68 aa6.71□□□□□ -1.34
USP28-204ENST00000537642 COX7CP15954 63 aa6.67□□□□□ -1.34
USP28-204ENST00000537642 SPRR2GQ9BYE4 73 aa6.66□□□□□ -1.34
USP28-204ENST00000537642 KLKP1Q107X0 134 aa6.65□□□□□ -1.34
USP28-204ENST00000537642 MT1BP07438 61 aa6.64□□□□□ -1.35
USP28-204ENST00000537642 RPS28P62857 69 aaKnown RBP6.64□□□□□ -1.35
USP28-204ENST00000537642 OCR1Q9BZK8 76 aa6.64□□□□□ -1.35
USP28-204ENST00000537642 SYNE2Q8WXH0 6885 aaKnown RBP6.63□□□□□ -1.35
USP28-204ENST00000537642 LINC00208Q96KT6 92 aa6.63□□□□□ -1.35
USP28-204ENST00000537642 KRTAP19-8Q3LI54 63 aa6.62□□□□□ -1.35
USP28-204ENST00000537642 Q5VV11 94 aa6.61□□□□□ -1.35
USP28-204ENST00000537642 SERP2Q8N6R1 65 aa6.61□□□□□ -1.35
USP28-204ENST00000537642 NDUFC1O43677 76 aa6.58□□□□□ -1.36
USP28-204ENST00000537642 MP68P56378 58 aa6.58□□□□□ -1.36
USP28-204ENST00000537642 TMEM258P61165 79 aa6.58□□□□□ -1.36
USP28-204ENST00000537642 A8MUN3 132 aa6.57□□□□□ -1.36
USP28-204ENST00000537642 SMIM20Q8N5G0 67 aa6.57□□□□□ -1.36
USP28-204ENST00000537642 CRIPTQ9P021 101 aa6.54□□□□□ -1.36
USP28-204ENST00000537642 A6NN06 94 aa6.52□□□□□ -1.37
USP28-204ENST00000537642 H0YAA0 97 aa6.52□□□□□ -1.37
USP28-204ENST00000537642 H3BPC8 53 aa6.49□□□□□ -1.37
USP28-204ENST00000537642 KRTAP6-3Q3LI67 103 aa6.48□□□□□ -1.37
USP28-204ENST00000537642 TRAV7A0A075B6U4 112 aa6.47□□□□□ -1.37
USP28-204ENST00000537642 KRTAP10-5P60370 271 aa6.47□□□□□ -1.37
USP28-204ENST00000537642 ADM2Q7Z4H4 148 aa6.46□□□□□ -1.38
USP28-204ENST00000537642 DMAC1Q96GE9 116 aa6.42□□□□□ -1.38
USP28-204ENST00000537642 ATP5EP56381 51 aaPredicted RBP6.41□□□□□ -1.38
USP28-204ENST00000537642 CYSTM1Q9H1C7 97 aa6.38□□□□□ -1.39
USP28-204ENST00000537642 SERP1Q9Y6X1 66 aa6.37□□□□□ -1.39
USP28-204ENST00000537642 H7BZZ5 65 aa6.35□□□□□ -1.39
USP28-204ENST00000537642 C20orf197Q8N268 126 aa6.34□□□□□ -1.39
USP28-204ENST00000537642 P0C880 135 aa6.33□□□□□ -1.4
USP28-204ENST00000537642 MUC12Q9UKN1 5478 aa6.29□□□□□ -1.4
USP28-204ENST00000537642 R4GN34 69 aa6.28□□□□□ -1.4
USP28-204ENST00000537642 SMIM26A0A096LP01 95 aa6.27□□□□□ -1.41
USP28-204ENST00000537642 NEBP20929 6669 aa6.26□□□□□ -1.41
USP28-204ENST00000537642 ACYP2P14621 99 aa6.25□□□□□ -1.41
USP28-204ENST00000537642 M0QZ58 72 aa6.24□□□□□ -1.41
USP28-204ENST00000537642 MT1XP80297 61 aa6.23□□□□□ -1.41
USP28-204ENST00000537642 PLAC4Q8WY50 150 aa6.23□□□□□ -1.41
USP28-204ENST00000537642 KRTAP5-9P26371 169 aa6.2□□□□□ -1.42
USP28-204ENST00000537642 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
USP28-204ENST00000537642 SNURFQ9Y675 71 aa6.19□□□□□ -1.42
USP28-204ENST00000537642 KMT2DO14686 5537 aa6.18□□□□□ -1.42
USP28-204ENST00000537642 LINC01554Q52M75 96 aa6.15□□□□□ -1.42
USP28-204ENST00000537642 SPTSSBQ8NFR3 76 aa6.15□□□□□ -1.42
USP28-204ENST00000537642 PRO0628Q9UI54 55 aa6.14□□□□□ -1.43
USP28-204ENST00000537642 CHKB-CPT1BH3BT56 60 aa6.13□□□□□ -1.43
USP28-204ENST00000537642 MDN1Q9NU22 5596 aa6.1□□□□□ -1.43
USP28-204ENST00000537642 SPANXA2-OT1Q8N9U9 137 aa6.1□□□□□ -1.43
USP28-204ENST00000537642 KRTAP12-2P59991 146 aa6.06□□□□□ -1.44
USP28-204ENST00000537642 Q1T7F1 81 aa6.05□□□□□ -1.44
USP28-204ENST00000537642 V9GYY9 64 aa6.02□□□□□ -1.45
USP28-204ENST00000537642 SPRR2FQ96RM1 72 aa6.01□□□□□ -1.45
USP28-204ENST00000537642 KRTAP8-1Q8IUC2 63 aa5.99□□□□□ -1.45
USP28-204ENST00000537642 KRTAP20-1Q3LI63 56 aa5.97□□□□□ -1.45
USP28-204ENST00000537642 KRTAP4-8A0A0G2JLE6 195 aa5.95□□□□□ -1.46
USP28-204ENST00000537642 KRTAP10-7P60409 375 aaPredicted RBP5.95□□□□□ -1.46
USP28-204ENST00000537642 KRTAP4-8Q9BYQ9 185 aa5.95□□□□□ -1.46
USP28-204ENST00000537642 KRTAP13-4Q3LI77 160 aa5.94□□□□□ -1.46
USP28-204ENST00000537642 COA5Q86WW8 74 aa5.94□□□□□ -1.46
USP28-204ENST00000537642 SPRR2EP22531 72 aa5.91□□□□□ -1.46
USP28-204ENST00000537642 SPRR2BP35325 72 aa5.91□□□□□ -1.46
USP28-204ENST00000537642 SPRR2AP35326 72 aa5.91□□□□□ -1.46
USP28-204ENST00000537642 KRTAP10-12P60413 245 aa5.91□□□□□ -1.46
USP28-204ENST00000537642 BRK1Q8WUW1 75 aa5.9□□□□□ -1.46
USP28-204ENST00000537642 LCE1AQ5T7P2 110 aa5.86□□□□□ -1.47
USP28-204ENST00000537642 KRTAP2-3P0C7H8 128 aa5.83□□□□□ -1.48
USP28-204ENST00000537642 KRTAP2-4Q9BYR9 128 aa5.83□□□□□ -1.48
USP28-204ENST00000537642 SEC61GP60059 68 aa5.79□□□□□ -1.48
USP28-204ENST00000537642 CAMK2N1Q7Z7J9 78 aa5.77□□□□□ -1.49
USP28-204ENST00000537642 LINC01558Q9Y6Z2 57 aa5.76□□□□□ -1.49
USP28-204ENST00000537642 A0A0D9SG42 100 aa5.74□□□□□ -1.49
USP28-204ENST00000537642 PSPHP1O15172 72 aa5.74□□□□□ -1.49
USP28-204ENST00000537642 SPATA8Q6RVD6 105 aa5.73□□□□□ -1.49
USP28-204ENST00000537642 PMAIP1Q13794 54 aa5.72□□□□□ -1.49
USP28-204ENST00000537642 A0A1B0GU33 70 aa5.71□□□□□ -1.5
USP28-204ENST00000537642 SPRR2DP22532 72 aa5.71□□□□□ -1.5
USP28-204ENST00000537642 PRR15LQ9BU68 103 aa5.69□□□□□ -1.5
USP28-204ENST00000537642 CDC42SE1Q9NRR8 79 aa5.69□□□□□ -1.5
USP28-204ENST00000537642 SPINT4Q6UDR6 99 aa5.64□□□□□ -1.51
USP28-204ENST00000537642 KRTAP2-2Q9BYT5 123 aa5.64□□□□□ -1.51
USP28-204ENST00000537642 KRTAP2-1Q9BYU5 128 aa5.64□□□□□ -1.51
USP28-204ENST00000537642 KRTAP12-1P59990 96 aa5.63□□□□□ -1.51
USP28-204ENST00000537642 A0A1B0GU69 56 aa5.62□□□□□ -1.51
USP28-204ENST00000537642 A6NED7 52 aa5.62□□□□□ -1.51
USP28-204ENST00000537642 KTN1-AS1Q86SY8 53 aa5.61□□□□□ -1.51
USP28-204ENST00000537642 KRTAP19-7Q3SYF9 63 aa5.57□□□□□ -1.52
USP28-204ENST00000537642 LCE3BQ5TA77 95 aa5.56□□□□□ -1.52
USP28-204ENST00000537642 A8MU10 97 aa5.53□□□□□ -1.52
USP28-204ENST00000537642 MT1EP04732 61 aa5.52□□□□□ -1.53
USP28-204ENST00000537642 LCE5AQ5TCM9 118 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms