RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 LCA10Q71F78 164 aa3.78□□□□□ -1.8
USP28-203ENST00000537490 C1orf64Q8NEQ6 169 aa3.78□□□□□ -1.8
USP28-203ENST00000537490 KRTAP10-5P60370 271 aa3.76□□□□□ -1.81
USP28-203ENST00000537490 NEBP20929 6669 aa3.75□□□□□ -1.81
USP28-203ENST00000537490 SPCS1Q9Y6A9 102 aa3.75□□□□□ -1.81
USP28-203ENST00000537490 KLKP1Q107X0 134 aa3.74□□□□□ -1.81
USP28-203ENST00000537490 UBL5Q9BZL1 73 aa3.74□□□□□ -1.81
USP28-203ENST00000537490 PRO0461Q9UI25 63 aa3.72□□□□□ -1.81
USP28-203ENST00000537490 A0A087WVE0 104 aa3.7□□□□□ -1.82
USP28-203ENST00000537490 KRTAP5-9P26371 169 aa3.7□□□□□ -1.82
USP28-203ENST00000537490 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
USP28-203ENST00000537490 TP53AIP1Q9HCN2 124 aa3.7□□□□□ -1.82
USP28-203ENST00000537490 LOC105371267A0A1B0GV96 52 aa3.68□□□□□ -1.82
USP28-203ENST00000537490 CYP4F30PQ9H0H9 118 aa3.68□□□□□ -1.82
USP28-203ENST00000537490 MUC12Q9UKN1 5478 aa3.67□□□□□ -1.82
USP28-203ENST00000537490 K7EP34 96 aa3.66□□□□□ -1.82
USP28-203ENST00000537490 CRIPTQ9P021 101 aa3.66□□□□□ -1.82
USP28-203ENST00000537490 IMUPQ9GZP8 106 aa3.65□□□□□ -1.83
USP28-203ENST00000537490 COL5A1-AS1Q5SY13 56 aa3.64□□□□□ -1.83
USP28-203ENST00000537490 KRTAP15-1Q3LI76 137 aa3.62□□□□□ -1.83
USP28-203ENST00000537490 TRAV22A0A0B4J277 110 aa3.61□□□□□ -1.83
USP28-203ENST00000537490 LOC101927531A0A1B0GV80 90 aa3.61□□□□□ -1.83
USP28-203ENST00000537490 KMT2DO14686 5537 aa3.6□□□□□ -1.83
USP28-203ENST00000537490 ETDBQ3ZM63 59 aa3.6□□□□□ -1.83
USP28-203ENST00000537490 H0YAA0 97 aa3.59□□□□□ -1.83
USP28-203ENST00000537490 NDUFC1O43677 76 aa3.59□□□□□ -1.83
USP28-203ENST00000537490 F8W1H4 67 aa3.58□□□□□ -1.84
USP28-203ENST00000537490 KRTAP2-3P0C7H8 128 aa3.58□□□□□ -1.84
USP28-203ENST00000537490 KRTAP2-4Q9BYR9 128 aa3.58□□□□□ -1.84
USP28-203ENST00000537490 GTF2H5Q6ZYL4 71 aa3.57□□□□□ -1.84
USP28-203ENST00000537490 ADM2Q7Z4H4 148 aa3.57□□□□□ -1.84
USP28-203ENST00000537490 MT1XP80297 61 aa3.56□□□□□ -1.84
USP28-203ENST00000537490 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
USP28-203ENST00000537490 A8MUN3 132 aa3.55□□□□□ -1.84
USP28-203ENST00000537490 H0Y9P7 68 aa3.55□□□□□ -1.84
USP28-203ENST00000537490 UQCRQO14949 82 aa3.55□□□□□ -1.84
USP28-203ENST00000537490 SPRR2EP22531 72 aa3.54□□□□□ -1.84
USP28-203ENST00000537490 SPRR2BP35325 72 aa3.54□□□□□ -1.84
USP28-203ENST00000537490 SPRR2AP35326 72 aa3.54□□□□□ -1.84
USP28-203ENST00000537490 ACYP1P07311 99 aa3.53□□□□□ -1.84
USP28-203ENST00000537490 PRO2289Q9P1D8 64 aa3.53□□□□□ -1.84
USP28-203ENST00000537490 ATOX1O00244 68 aa3.52□□□□□ -1.85
USP28-203ENST00000537490 HIST1H4AP62805 103 aaKnown RBP3.52□□□□□ -1.85
USP28-203ENST00000537490 MDN1Q9NU22 5596 aa3.52□□□□□ -1.85
USP28-203ENST00000537490 KRTAP8-1Q8IUC2 63 aa3.51□□□□□ -1.85
USP28-203ENST00000537490 PLAC4Q8WY50 150 aa3.51□□□□□ -1.85
USP28-203ENST00000537490 LCE1AQ5T7P2 110 aa3.5□□□□□ -1.85
USP28-203ENST00000537490 ATP5EP2Q5VTU8 51 aa3.49□□□□□ -1.85
USP28-203ENST00000537490 LINC00208Q96KT6 92 aa3.49□□□□□ -1.85
USP28-203ENST00000537490 P0C880 135 aa3.48□□□□□ -1.85
USP28-203ENST00000537490 KRTAP12-2P59991 146 aa3.48□□□□□ -1.85
USP28-203ENST00000537490 FAM240AA0A1B0GVK7 77 aa3.47□□□□□ -1.85
USP28-203ENST00000537490 R4GN34 69 aa3.47□□□□□ -1.85
USP28-203ENST00000537490 PCP4L1A6NKN8 68 aa3.46□□□□□ -1.86
USP28-203ENST00000537490 KRTAP2-2Q9BYT5 123 aa3.46□□□□□ -1.86
USP28-203ENST00000537490 KRTAP2-1Q9BYU5 128 aa3.46□□□□□ -1.86
USP28-203ENST00000537490 M0QZ58 72 aa3.44□□□□□ -1.86
USP28-203ENST00000537490 LINC00643Q86TS7 51 aa3.43□□□□□ -1.86
USP28-203ENST00000537490 OCR1Q9BZK8 76 aa3.43□□□□□ -1.86
USP28-203ENST00000537490 SPRR2DP22532 72 aa3.42□□□□□ -1.86
USP28-203ENST00000537490 MP68P56378 58 aa3.42□□□□□ -1.86
USP28-203ENST00000537490 C20orf197Q8N268 126 aa3.42□□□□□ -1.86
USP28-203ENST00000537490 LINC01554Q52M75 96 aa3.41□□□□□ -1.86
USP28-203ENST00000537490 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.87
USP28-203ENST00000537490 DMAC1Q96GE9 116 aa3.39□□□□□ -1.87
USP28-203ENST00000537490 KRTAP10-12P60413 245 aa3.37□□□□□ -1.87
USP28-203ENST00000537490 H3BPC8 53 aa3.36□□□□□ -1.87
USP28-203ENST00000537490 TRAV7A0A075B6U4 112 aa3.3□□□□□ -1.88
USP28-203ENST00000537490 MT-ATP8P03928 68 aa3.3□□□□□ -1.88
USP28-203ENST00000537490 SCGB1A1P11684 91 aa3.29□□□□□ -1.88
USP28-203ENST00000537490 ACYP2P14621 99 aa3.28□□□□□ -1.88
USP28-203ENST00000537490 SVIPQ8NHG7 77 aa3.28□□□□□ -1.88
USP28-203ENST00000537490 A0A1B0GV90 55 aa3.27□□□□□ -1.89
USP28-203ENST00000537490 SPTSSBQ8NFR3 76 aa3.24□□□□□ -1.89
USP28-203ENST00000537490 J3QR89 54 aa3.22□□□□□ -1.89
USP28-203ENST00000537490 CHKB-CPT1BH3BT56 60 aa3.21□□□□□ -1.9
USP28-203ENST00000537490 KRTAP13-4Q3LI77 160 aa3.21□□□□□ -1.9
USP28-203ENST00000537490 KRTAP19-7Q3SYF9 63 aa3.19□□□□□ -1.9
USP28-203ENST00000537490 CAMK2N1Q7Z7J9 78 aa3.17□□□□□ -1.9
USP28-203ENST00000537490 MT1EP04732 61 aa3.16□□□□□ -1.9
USP28-203ENST00000537490 KRTAP19-3Q7Z4W3 81 aa3.16□□□□□ -1.9
USP28-203ENST00000537490 PCP4P48539 62 aa3.15□□□□□ -1.91
USP28-203ENST00000537490 SMIM20Q8N5G0 67 aa3.15□□□□□ -1.91
USP28-203ENST00000537490 SNURFQ9Y675 71 aa3.15□□□□□ -1.91
USP28-203ENST00000537490 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
USP28-203ENST00000537490 SPANXA2-OT1Q8N9U9 137 aa3.11□□□□□ -1.91
USP28-203ENST00000537490 A0A0D9SG42 100 aa3.08□□□□□ -1.92
USP28-203ENST00000537490 CYSTM1Q9H1C7 97 aa3.08□□□□□ -1.92
USP28-203ENST00000537490 MT1GP13640 62 aa3.07□□□□□ -1.92
USP28-203ENST00000537490 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
USP28-203ENST00000537490 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
USP28-203ENST00000537490 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.05□□□□□ -1.92
USP28-203ENST00000537490 SPATA8Q6RVD6 105 aa3.05□□□□□ -1.92
USP28-203ENST00000537490 SPINT4Q6UDR6 99 aa3.04□□□□□ -1.92
USP28-203ENST00000537490 COA5Q86WW8 74 aa3.04□□□□□ -1.92
USP28-203ENST00000537490 K7ERU9 68 aa3.03□□□□□ -1.92
USP28-203ENST00000537490 A0A0A0MQY5 61 aa3.02□□□□□ -1.93
USP28-203ENST00000537490 MT4P47944 62 aa3.02□□□□□ -1.93
USP28-203ENST00000537490 MT1MQ8N339 61 aa3.02□□□□□ -1.93
USP28-203ENST00000537490 SERP2Q8N6R1 65 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms