RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 ALMS1Q8TCU4 4167 aa5.75□□□□□ -1.49
TCOF1-214ENST00000515035 AKAP9Q99996 3911 aa5.72□□□□□ -1.49
TCOF1-214ENST00000515035 LCE3AQ5TA76 89 aa5.71□□□□□ -1.49
TCOF1-214ENST00000515035 LORP23490 312 aaPredicted RBP5.62□□□□□ -1.51
TCOF1-214ENST00000515035 DNAH9Q9NYC9 4486 aa5.55□□□□□ -1.52
TCOF1-214ENST00000515035 CSMD3Q7Z407 3707 aa5.53□□□□□ -1.52
TCOF1-214ENST00000515035 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
TCOF1-214ENST00000515035 DNAH5Q8TE73 4624 aa5.49□□□□□ -1.53
TCOF1-214ENST00000515035 DNAH11Q96DT5 4516 aa5.45□□□□□ -1.54
TCOF1-214ENST00000515035 DNAH1Q9P2D7 4330 aa5.43□□□□□ -1.54
TCOF1-214ENST00000515035 PLECQ15149 4684 aaKnown RBP5.43□□□□□ -1.54
TCOF1-214ENST00000515035 DNAH10Q8IVF4 4471 aa5.42□□□□□ -1.54
TCOF1-214ENST00000515035 DNHD1Q96M86 4753 aa5.42□□□□□ -1.54
TCOF1-214ENST00000515035 KRTAP4-1Q9BYQ7 146 aa5.33□□□□□ -1.56
TCOF1-214ENST00000515035 MT1HP80294 61 aa5.32□□□□□ -1.56
TCOF1-214ENST00000515035 DNAH17Q9UFH2 4485 aa5.31□□□□□ -1.56
TCOF1-214ENST00000515035 KRTAP8-1Q8IUC2 63 aa5.29□□□□□ -1.56
TCOF1-214ENST00000515035 VPS13DQ5THJ4 4388 aa5.28□□□□□ -1.56
TCOF1-214ENST00000515035 DYNC1H1Q14204 4646 aaKnown RBP5.26□□□□□ -1.57
TCOF1-214ENST00000515035 DNAH2Q9P225 4427 aa5.25□□□□□ -1.57
TCOF1-214ENST00000515035 ANK2Q01484 3957 aa5.23□□□□□ -1.57
TCOF1-214ENST00000515035 CMYA5Q8N3K9 4069 aa5.23□□□□□ -1.57
TCOF1-214ENST00000515035 MT2AP02795 61 aa5.23□□□□□ -1.57
TCOF1-214ENST00000515035 FAT1Q14517 4588 aa5.21□□□□□ -1.58
TCOF1-214ENST00000515035 DNAH3Q8TD57 4116 aa5.21□□□□□ -1.58
TCOF1-214ENST00000515035 RYR1P21817 5038 aa5.17□□□□□ -1.58
TCOF1-214ENST00000515035 DNAH8Q96JB1 4490 aa5.16□□□□□ -1.58
TCOF1-214ENST00000515035 LRP1BQ9NZR2 4599 aa5.16□□□□□ -1.58
TCOF1-214ENST00000515035 SPRR2GQ9BYE4 73 aa5.15□□□□□ -1.59
TCOF1-214ENST00000515035 STARD9Q9P2P6 4700 aa5.1□□□□□ -1.59
TCOF1-214ENST00000515035 MT1FP04733 61 aa5.09□□□□□ -1.59
TCOF1-214ENST00000515035 FAT2Q9NYQ8 4349 aa5.09□□□□□ -1.59
TCOF1-214ENST00000515035 SACSQ9NZJ4 4579 aa5.09□□□□□ -1.6
TCOF1-214ENST00000515035 DYNC2H1Q8NCM8 4307 aaKnown RBP5.08□□□□□ -1.6
TCOF1-214ENST00000515035 PRKDCP78527 4128 aaKnown RBP5.07□□□□□ -1.6
TCOF1-214ENST00000515035 LCE3CQ5T5A8 94 aa5.04□□□□□ -1.6
TCOF1-214ENST00000515035 KRTAP19-5Q3LI72 72 aa5.03□□□□□ -1.6
TCOF1-214ENST00000515035 RYR3Q15413 4870 aa4.96□□□□□ -1.62
TCOF1-214ENST00000515035 APOBP04114 4563 aaKnown RBP4.95□□□□□ -1.62
TCOF1-214ENST00000515035 SPRR2FQ96RM1 72 aa4.94□□□□□ -1.62
TCOF1-214ENST00000515035 KMT2AQ03164 3969 aa4.93□□□□□ -1.62
TCOF1-214ENST00000515035 KIAA1109Q2LD37 5005 aa4.93□□□□□ -1.62
TCOF1-214ENST00000515035 KRTAP17-1Q9BYP8 105 aa4.92□□□□□ -1.62
TCOF1-214ENST00000515035 DNAH6Q9C0G6 4158 aa4.92□□□□□ -1.62
TCOF1-214ENST00000515035 VPS13BQ7Z7G8 4022 aa4.91□□□□□ -1.62
TCOF1-214ENST00000515035 LYSTQ99698 3801 aa4.91□□□□□ -1.62
TCOF1-214ENST00000515035 DNAH7Q8WXX0 4024 aa4.9□□□□□ -1.63
TCOF1-214ENST00000515035 KRTAP10-7P60409 375 aaPredicted RBP4.9□□□□□ -1.63
TCOF1-214ENST00000515035 RYR2Q92736 4967 aa4.87□□□□□ -1.63
TCOF1-214ENST00000515035 KRTAP19-4Q3LI73 84 aa4.86□□□□□ -1.63
TCOF1-214ENST00000515035 MYCBP2O75592 4640 aa4.85□□□□□ -1.63
TCOF1-214ENST00000515035 KRTAP19-8Q3LI54 63 aa4.84□□□□□ -1.64
TCOF1-214ENST00000515035 HECTD4Q9Y4D8 3996 aa4.82□□□□□ -1.64
TCOF1-214ENST00000515035 FAT3Q8TDW7 4589 aa4.8□□□□□ -1.64
TCOF1-214ENST00000515035 BIRC6Q9NR09 4857 aa4.79□□□□□ -1.64
TCOF1-214ENST00000515035 KRTAP19-1Q8IUB9 90 aa4.78□□□□□ -1.64
TCOF1-214ENST00000515035 FRAS1Q86XX4 4008 aa4.77□□□□□ -1.65
TCOF1-214ENST00000515035 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
TCOF1-214ENST00000515035 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
TCOF1-214ENST00000515035 HERC1Q15751 4861 aa4.75□□□□□ -1.65
TCOF1-214ENST00000515035 LRP1Q07954 4544 aaKnown RBP4.72□□□□□ -1.65
TCOF1-214ENST00000515035 HERC2O95714 4834 aa4.7□□□□□ -1.66
TCOF1-214ENST00000515035 HYDINQ4G0P3 5121 aa4.7□□□□□ -1.66
TCOF1-214ENST00000515035 LCE3BQ5TA77 95 aa4.69□□□□□ -1.66
TCOF1-214ENST00000515035 KRTAP9-8Q9BYQ0 159 aa4.68□□□□□ -1.66
TCOF1-214ENST00000515035 SPRR2EP22531 72 aa4.67□□□□□ -1.66
TCOF1-214ENST00000515035 SPRR2BP35325 72 aa4.67□□□□□ -1.66
TCOF1-214ENST00000515035 SPRR2AP35326 72 aa4.67□□□□□ -1.66
TCOF1-214ENST00000515035 MT1BP07438 61 aa4.64□□□□□ -1.67
TCOF1-214ENST00000515035 LCE2CQ5TA81 110 aa4.63□□□□□ -1.67
TCOF1-214ENST00000515035 HSPG2P98160 4391 aa4.63□□□□□ -1.67
TCOF1-214ENST00000515035 MT1XP80297 61 aa4.63□□□□□ -1.67
TCOF1-214ENST00000515035 KRTAP9-3Q9BYQ3 159 aa4.59□□□□□ -1.68
TCOF1-214ENST00000515035 PKD1P98161 4303 aa4.58□□□□□ -1.68
TCOF1-214ENST00000515035 MT1GP13640 62 aa4.58□□□□□ -1.68
TCOF1-214ENST00000515035 PCLOQ9Y6V0 5065 aa4.57□□□□□ -1.68
TCOF1-214ENST00000515035 SPRR2DP22532 72 aa4.53□□□□□ -1.68
TCOF1-214ENST00000515035 LRP2P98164 4655 aa4.52□□□□□ -1.69
TCOF1-214ENST00000515035 KMT2CQ8NEZ4 4911 aaKnown RBP4.52□□□□□ -1.69
TCOF1-214ENST00000515035 PKHD1P08F94 4074 aa4.52□□□□□ -1.69
TCOF1-214ENST00000515035 PKHD1L1Q86WI1 4243 aa4.5□□□□□ -1.69
TCOF1-214ENST00000515035 LCE2BO14633 110 aa4.5□□□□□ -1.69
TCOF1-214ENST00000515035 LCE3DQ9BYE3 92 aa4.5□□□□□ -1.69
TCOF1-214ENST00000515035 KRTAP4-8A0A0G2JLE6 195 aa4.46□□□□□ -1.7
TCOF1-214ENST00000515035 KRTAP4-8Q9BYQ9 185 aa4.46□□□□□ -1.7
TCOF1-214ENST00000515035 LCE3EQ5T5B0 92 aa4.45□□□□□ -1.7
TCOF1-214ENST00000515035 KRTAP19-2Q3LHN2 52 aa4.4□□□□□ -1.7
TCOF1-214ENST00000515035 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
TCOF1-214ENST00000515035 EPPK1P58107 5090 aaKnown RBP4.34□□□□□ -1.71
TCOF1-214ENST00000515035 TNXBP22105 4242 aa4.33□□□□□ -1.72
TCOF1-214ENST00000515035 KRTAP4-7Q9BYR0 210 aa4.29□□□□□ -1.72
TCOF1-214ENST00000515035 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
TCOF1-214ENST00000515035 MUC17Q685J3 4493 aa4.27□□□□□ -1.73
TCOF1-214ENST00000515035 KRTAP9-2Q9BYQ4 174 aa4.27□□□□□ -1.73
TCOF1-214ENST00000515035 KRTAP19-6Q3LI70 58 aa4.25□□□□□ -1.73
TCOF1-214ENST00000515035 ABCA13Q86UQ4 5058 aa4.24□□□□□ -1.73
TCOF1-214ENST00000515035 MT1LQ93083 61 aa4.24□□□□□ -1.73
TCOF1-214ENST00000515035 LPAP08519 4548 aa4.22□□□□□ -1.73
TCOF1-214ENST00000515035 LCE2DQ5TA82 110 aaPredicted RBP4.21□□□□□ -1.74
TCOF1-214ENST00000515035 FLGP20930 4061 aaPredicted RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms