RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 KRTAP9-6A0A140TA67 174 aa6.67□□□□□ -1.34
NUP54-216ENST00000514901 NDUFC1O43677 76 aa6.67□□□□□ -1.34
NUP54-216ENST00000514901 FSIP2Q5CZC0 6907 aa6.66□□□□□ -1.34
NUP54-216ENST00000514901 CRCT1Q9UGL9 99 aa6.66□□□□□ -1.34
NUP54-216ENST00000514901 SERP2Q8N6R1 65 aa6.64□□□□□ -1.35
NUP54-216ENST00000514901 DMAC1Q96GE9 116 aa6.63□□□□□ -1.35
NUP54-216ENST00000514901 LCE2BO14633 110 aa6.59□□□□□ -1.35
NUP54-216ENST00000514901 SNURFQ9Y675 71 aa6.57□□□□□ -1.36
NUP54-216ENST00000514901 C20orf197Q8N268 126 aa6.56□□□□□ -1.36
NUP54-216ENST00000514901 USH2AO75445 5202 aa6.56□□□□□ -1.36
NUP54-216ENST00000514901 ACYP2P14621 99 aa6.55□□□□□ -1.36
NUP54-216ENST00000514901 H0YAA0 97 aa6.54□□□□□ -1.36
NUP54-216ENST00000514901 SPANXA2-OT1Q8N9U9 137 aa6.51□□□□□ -1.37
NUP54-216ENST00000514901 COX7CP15954 63 aa6.5□□□□□ -1.37
NUP54-216ENST00000514901 CRIPTQ9P021 101 aa6.49□□□□□ -1.37
NUP54-216ENST00000514901 KRTAP19-1Q8IUB9 90 aa6.46□□□□□ -1.38
NUP54-216ENST00000514901 ADM2Q7Z4H4 148 aa6.45□□□□□ -1.38
NUP54-216ENST00000514901 SPTSSBQ8NFR3 76 aa6.45□□□□□ -1.38
NUP54-216ENST00000514901 SPRR2GQ9BYE4 73 aa6.45□□□□□ -1.38
NUP54-216ENST00000514901 SSPOA2VEC9 5147 aa6.43□□□□□ -1.38
NUP54-216ENST00000514901 CHKB-CPT1BH3BT56 60 aa6.42□□□□□ -1.38
NUP54-216ENST00000514901 ANAPC13Q9BS18 74 aa6.39□□□□□ -1.39
NUP54-216ENST00000514901 KRTAP19-8Q3LI54 63 aa6.36□□□□□ -1.39
NUP54-216ENST00000514901 KRTAP19-6Q3LI70 58 aa6.36□□□□□ -1.39
NUP54-216ENST00000514901 Q5VV11 94 aa6.36□□□□□ -1.39
NUP54-216ENST00000514901 H7BZZ5 65 aa6.33□□□□□ -1.4
NUP54-216ENST00000514901 KRTAP3-2Q9BYR7 98 aa6.31□□□□□ -1.4
NUP54-216ENST00000514901 FCGBPQ9Y6R7 5405 aaPredicted RBP6.3□□□□□ -1.4
NUP54-216ENST00000514901 P0C880 135 aa6.3□□□□□ -1.4
NUP54-216ENST00000514901 MT1BP07438 61 aa6.29□□□□□ -1.4
NUP54-216ENST00000514901 CYSTM1Q9H1C7 97 aa6.29□□□□□ -1.4
NUP54-216ENST00000514901 R4GN34 69 aa6.28□□□□□ -1.4
NUP54-216ENST00000514901 COA5Q86WW8 74 aa6.27□□□□□ -1.41
NUP54-216ENST00000514901 CCDC179H3BU77 68 aa6.23□□□□□ -1.41
NUP54-216ENST00000514901 M0QZ58 72 aa6.22□□□□□ -1.41
NUP54-216ENST00000514901 A6NN06 94 aa6.17□□□□□ -1.42
NUP54-216ENST00000514901 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.17□□□□□ -1.42
NUP54-216ENST00000514901 ATP5EP56381 51 aaPredicted RBP6.15□□□□□ -1.42
NUP54-216ENST00000514901 PLAC4Q8WY50 150 aa6.15□□□□□ -1.42
NUP54-216ENST00000514901 SEC61GP60059 68 aa6.13□□□□□ -1.43
NUP54-216ENST00000514901 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
NUP54-216ENST00000514901 SERP1Q9Y6X1 66 aa6.11□□□□□ -1.43
NUP54-216ENST00000514901 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
NUP54-216ENST00000514901 TMEM258P61165 79 aa6.06□□□□□ -1.44
NUP54-216ENST00000514901 MACF1Q9UPN3 7388 aaKnown RBP6.06□□□□□ -1.44
NUP54-216ENST00000514901 PRO2289Q9P1D8 64 aa6.05□□□□□ -1.44
NUP54-216ENST00000514901 KRTAP9-7A8MTY7 169 aa6.02□□□□□ -1.45
NUP54-216ENST00000514901 A0A1B0GU33 70 aa5.97□□□□□ -1.45
NUP54-216ENST00000514901 A0A1B0GU69 56 aa5.97□□□□□ -1.45
NUP54-216ENST00000514901 MT1XP80297 61 aa5.97□□□□□ -1.45
NUP54-216ENST00000514901 KRTAP13-4Q3LI77 160 aa5.97□□□□□ -1.45
NUP54-216ENST00000514901 SYNE2Q8WXH0 6885 aaKnown RBP5.95□□□□□ -1.46
NUP54-216ENST00000514901 PRR15LQ9BU68 103 aa5.9□□□□□ -1.46
NUP54-216ENST00000514901 KRTAP6-3Q3LI67 103 aa5.89□□□□□ -1.47
NUP54-216ENST00000514901 SPATA8Q6RVD6 105 aa5.87□□□□□ -1.47
NUP54-216ENST00000514901 LINC01558Q9Y6Z2 57 aa5.87□□□□□ -1.47
NUP54-216ENST00000514901 A0A0D9SG42 100 aa5.84□□□□□ -1.47
NUP54-216ENST00000514901 SMIM26A0A096LP01 95 aa5.83□□□□□ -1.48
NUP54-216ENST00000514901 KRTAP12-2P59991 146 aa5.82□□□□□ -1.48
NUP54-216ENST00000514901 CAMK2N1Q7Z7J9 78 aa5.81□□□□□ -1.48
NUP54-216ENST00000514901 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
NUP54-216ENST00000514901 PCP4P48539 62 aa5.74□□□□□ -1.49
NUP54-216ENST00000514901 KRTAP12-1P59990 96 aa5.74□□□□□ -1.49
NUP54-216ENST00000514901 V9GYY9 64 aa5.73□□□□□ -1.49
NUP54-216ENST00000514901 KRTAP5-9P26371 169 aa5.71□□□□□ -1.5
NUP54-216ENST00000514901 KRTAP10-12P60413 245 aa5.7□□□□□ -1.5
NUP54-216ENST00000514901 A8MU10 97 aa5.69□□□□□ -1.5
NUP54-216ENST00000514901 UQCR11O14957 56 aa5.69□□□□□ -1.5
NUP54-216ENST00000514901 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
NUP54-216ENST00000514901 KMT2DO14686 5537 aa5.68□□□□□ -1.5
NUP54-216ENST00000514901 Q1T7F1 81 aa5.66□□□□□ -1.5
NUP54-216ENST00000514901 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
NUP54-216ENST00000514901 RPS28P62857 69 aaKnown RBP5.62□□□□□ -1.51
NUP54-216ENST00000514901 MUC12Q9UKN1 5478 aa5.61□□□□□ -1.51
NUP54-216ENST00000514901 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
NUP54-216ENST00000514901 KRTAP4-8Q9BYQ9 185 aa5.61□□□□□ -1.51
NUP54-216ENST00000514901 NEBP20929 6669 aa5.61□□□□□ -1.51
NUP54-216ENST00000514901 SPRR2FQ96RM1 72 aa5.59□□□□□ -1.51
NUP54-216ENST00000514901 PSPHP1O15172 72 aa5.58□□□□□ -1.52
NUP54-216ENST00000514901 MIR22HGQ0VDD5 57 aa5.57□□□□□ -1.52
NUP54-216ENST00000514901 MDN1Q9NU22 5596 aa5.52□□□□□ -1.53
NUP54-216ENST00000514901 K7ERS5 55 aa5.47□□□□□ -1.53
NUP54-216ENST00000514901 C10orf95Q9H7T3 257 aa5.46□□□□□ -1.54
NUP54-216ENST00000514901 TNP1P09430 55 aa5.45□□□□□ -1.54
NUP54-216ENST00000514901 SPRR2EP22531 72 aa5.44□□□□□ -1.54
NUP54-216ENST00000514901 SPRR2BP35325 72 aa5.44□□□□□ -1.54
NUP54-216ENST00000514901 SPRR2AP35326 72 aa5.44□□□□□ -1.54
NUP54-216ENST00000514901 A6NED7 52 aa5.43□□□□□ -1.54
NUP54-216ENST00000514901 LCE1AQ5T7P2 110 aa5.41□□□□□ -1.54
NUP54-216ENST00000514901 KRTAP19-7Q3SYF9 63 aa5.33□□□□□ -1.56
NUP54-216ENST00000514901 KRTAP20-1Q3LI63 56 aa5.32□□□□□ -1.56
NUP54-216ENST00000514901 MT1EP04732 61 aa5.28□□□□□ -1.56
NUP54-216ENST00000514901 KRTAP2-3P0C7H8 128 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 SPRR2DP22532 72 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 KRTAP25-1Q3LHN0 102 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 KRTAP2-4Q9BYR9 128 aa5.27□□□□□ -1.57
NUP54-216ENST00000514901 CDC42SE1Q9NRR8 79 aa5.24□□□□□ -1.57
NUP54-216ENST00000514901 KRTAP19-3Q7Z4W3 81 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms