RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MUC17Q685J3 4493 aa8.01□□□□□ -1.13
NUP54-214ENST00000514307 S4R3F8 94 aa8□□□□□ -1.13
NUP54-214ENST00000514307 MUC2Q02817 5179 aa7.96□□□□□ -1.14
NUP54-214ENST00000514307 Q1T7F1 81 aa7.94□□□□□ -1.14
NUP54-214ENST00000514307 LCA10Q71F78 164 aa7.92□□□□□ -1.14
NUP54-214ENST00000514307 CSAG1Q6PB30 78 aa7.91□□□□□ -1.14
NUP54-214ENST00000514307 LINC01558Q9Y6Z2 57 aa7.89□□□□□ -1.15
NUP54-214ENST00000514307 SEC61GP60059 68 aa7.88□□□□□ -1.15
NUP54-214ENST00000514307 KRTAP19-2Q3LHN2 52 aa7.86□□□□□ -1.15
NUP54-214ENST00000514307 PRR15LQ9BU68 103 aa7.86□□□□□ -1.15
NUP54-214ENST00000514307 KRTAP3-3Q9BYR6 98 aa7.86□□□□□ -1.15
NUP54-214ENST00000514307 A0A1B0GU69 56 aa7.82□□□□□ -1.16
NUP54-214ENST00000514307 PSPHP1O15172 72 aa7.75□□□□□ -1.17
NUP54-214ENST00000514307 LCE2CQ5TA81 110 aa7.73□□□□□ -1.17
NUP54-214ENST00000514307 FAT4Q6V0I7 4981 aa7.73□□□□□ -1.17
NUP54-214ENST00000514307 H0YAA0 97 aa7.68□□□□□ -1.18
NUP54-214ENST00000514307 M0R2T5 61 aa7.65□□□□□ -1.18
NUP54-214ENST00000514307 Q5VV11 94 aa7.65□□□□□ -1.18
NUP54-214ENST00000514307 LCE2AQ5TA79 106 aaPredicted RBP7.63□□□□□ -1.19
NUP54-214ENST00000514307 ADM2Q7Z4H4 148 aa7.63□□□□□ -1.19
NUP54-214ENST00000514307 A0A1B0GU33 70 aa7.6□□□□□ -1.19
NUP54-214ENST00000514307 MT1HP80294 61 aa7.6□□□□□ -1.19
NUP54-214ENST00000514307 UQCR11O14957 56 aa7.59□□□□□ -1.19
NUP54-214ENST00000514307 KRTAP3-2Q9BYR7 98 aa7.58□□□□□ -1.2
NUP54-214ENST00000514307 A6NED7 52 aa7.57□□□□□ -1.2
NUP54-214ENST00000514307 KRTAP10-6P60371 365 aaPredicted RBP7.56□□□□□ -1.2
NUP54-214ENST00000514307 FLGP20930 4061 aaPredicted RBP7.53□□□□□ -1.2
NUP54-214ENST00000514307 P0C880 135 aa7.51□□□□□ -1.21
NUP54-214ENST00000514307 M0QZ58 72 aa7.48□□□□□ -1.21
NUP54-214ENST00000514307 MIR22HGQ0VDD5 57 aa7.47□□□□□ -1.21
NUP54-214ENST00000514307 SPATA8Q6RVD6 105 aa7.45□□□□□ -1.22
NUP54-214ENST00000514307 KRTAP9-2Q9BYQ4 174 aa7.45□□□□□ -1.22
NUP54-214ENST00000514307 CRIPTQ9P021 101 aa7.44□□□□□ -1.22
NUP54-214ENST00000514307 BRK1Q8WUW1 75 aa7.42□□□□□ -1.22
NUP54-214ENST00000514307 CDC42SE1Q9NRR8 79 aa7.42□□□□□ -1.22
NUP54-214ENST00000514307 R4GN34 69 aa7.4□□□□□ -1.22
NUP54-214ENST00000514307 KRTAP10-10P60014 251 aa7.33□□□□□ -1.24
NUP54-214ENST00000514307 KRTAP9-8Q9BYQ0 159 aa7.32□□□□□ -1.24
NUP54-214ENST00000514307 MT2AP02795 61 aa7.29□□□□□ -1.24
NUP54-214ENST00000514307 LORP23490 312 aaPredicted RBP7.28□□□□□ -1.24
NUP54-214ENST00000514307 KRTAP13-4Q3LI77 160 aa7.28□□□□□ -1.24
NUP54-214ENST00000514307 K7ERS5 55 aa7.26□□□□□ -1.25
NUP54-214ENST00000514307 PRO0628Q9UI54 55 aa7.26□□□□□ -1.25
NUP54-214ENST00000514307 A0A0D9SG42 100 aa7.24□□□□□ -1.25
NUP54-214ENST00000514307 A8MU10 97 aa7.23□□□□□ -1.25
NUP54-214ENST00000514307 LINC01554Q52M75 96 aa7.22□□□□□ -1.25
NUP54-214ENST00000514307 MT1FP04733 61 aa7.21□□□□□ -1.26
NUP54-214ENST00000514307 KRTAP9-6A0A140TA67 174 aa7.17□□□□□ -1.26
NUP54-214ENST00000514307 SPRR2GQ9BYE4 73 aa7.17□□□□□ -1.26
NUP54-214ENST00000514307 A6NN06 94 aa7.15□□□□□ -1.26
NUP54-214ENST00000514307 FSIP2Q5CZC0 6907 aa7.14□□□□□ -1.27
NUP54-214ENST00000514307 LCE2DQ5TA82 110 aaPredicted RBP7.14□□□□□ -1.27
NUP54-214ENST00000514307 SPINT4Q6UDR6 99 aa7.13□□□□□ -1.27
NUP54-214ENST00000514307 KRTAP19-1Q8IUB9 90 aa7.09□□□□□ -1.27
NUP54-214ENST00000514307 KRTAP12-1P59990 96 aa7.08□□□□□ -1.28
NUP54-214ENST00000514307 PMAIP1Q13794 54 aa7.07□□□□□ -1.28
NUP54-214ENST00000514307 KRTAP9-3Q9BYQ3 159 aa7.06□□□□□ -1.28
NUP54-214ENST00000514307 PLAC4Q8WY50 150 aa7.04□□□□□ -1.28
NUP54-214ENST00000514307 KRTAP12-2P59991 146 aa7.03□□□□□ -1.28
NUP54-214ENST00000514307 CRCT1Q9UGL9 99 aa7.02□□□□□ -1.29
NUP54-214ENST00000514307 KRTAP19-8Q3LI54 63 aa6.99□□□□□ -1.29
NUP54-214ENST00000514307 CAMK2N1Q7Z7J9 78 aa6.95□□□□□ -1.3
NUP54-214ENST00000514307 ROMO1P60602 79 aa6.85□□□□□ -1.31
NUP54-214ENST00000514307 LCE2BO14633 110 aa6.83□□□□□ -1.32
NUP54-214ENST00000514307 MT1BP07438 61 aa6.82□□□□□ -1.32
NUP54-214ENST00000514307 USH2AO75445 5202 aa6.82□□□□□ -1.32
NUP54-214ENST00000514307 SSPOA2VEC9 5147 aa6.75□□□□□ -1.33
NUP54-214ENST00000514307 PRO2289Q9P1D8 64 aa6.72□□□□□ -1.33
NUP54-214ENST00000514307 KTN1-AS1Q86SY8 53 aa6.7□□□□□ -1.34
NUP54-214ENST00000514307 C10orf95Q9H7T3 257 aa6.7□□□□□ -1.34
NUP54-214ENST00000514307 KRTAP25-1Q3LHN0 102 aa6.63□□□□□ -1.35
NUP54-214ENST00000514307 TNP1P09430 55 aa6.62□□□□□ -1.35
NUP54-214ENST00000514307 MT1XP80297 61 aa6.6□□□□□ -1.35
NUP54-214ENST00000514307 KRTAP10-5P60370 271 aa6.59□□□□□ -1.35
NUP54-214ENST00000514307 FCGBPQ9Y6R7 5405 aaPredicted RBP6.58□□□□□ -1.36
NUP54-214ENST00000514307 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.56□□□□□ -1.36
NUP54-214ENST00000514307 KRTAP19-6Q3LI70 58 aa6.5□□□□□ -1.37
NUP54-214ENST00000514307 PRAC1Q96KF2 57 aa6.48□□□□□ -1.37
NUP54-214ENST00000514307 KRTAP9-7A8MTY7 169 aa6.46□□□□□ -1.38
NUP54-214ENST00000514307 KRTAP23-1A1A580 65 aa6.44□□□□□ -1.38
NUP54-214ENST00000514307 SVIPQ8NHG7 77 aa6.44□□□□□ -1.38
NUP54-214ENST00000514307 MACF1Q9UPN3 7388 aaKnown RBP6.43□□□□□ -1.38
NUP54-214ENST00000514307 PP632Q6XCG6 107 aa6.43□□□□□ -1.38
NUP54-214ENST00000514307 SYNE2Q8WXH0 6885 aaKnown RBP6.36□□□□□ -1.39
NUP54-214ENST00000514307 KRTAP10-7P60409 375 aaPredicted RBP6.31□□□□□ -1.4
NUP54-214ENST00000514307 KRTAP10-12P60413 245 aa6.3□□□□□ -1.4
NUP54-214ENST00000514307 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
NUP54-214ENST00000514307 KRTAP8-1Q8IUC2 63 aa6.14□□□□□ -1.43
NUP54-214ENST00000514307 KRTAP4-8A0A0G2JLE6 195 aa6.07□□□□□ -1.44
NUP54-214ENST00000514307 KRTAP4-8Q9BYQ9 185 aa6.07□□□□□ -1.44
NUP54-214ENST00000514307 KRTAP6-3Q3LI67 103 aa6.06□□□□□ -1.44
NUP54-214ENST00000514307 KRTAP12-3P60328 96 aa6.03□□□□□ -1.44
NUP54-214ENST00000514307 KRTAP19-5Q3LI72 72 aa5.98□□□□□ -1.45
NUP54-214ENST00000514307 NEBP20929 6669 aa5.95□□□□□ -1.46
NUP54-214ENST00000514307 MUC12Q9UKN1 5478 aa5.94□□□□□ -1.46
NUP54-214ENST00000514307 KRTAP15-1Q3LI76 137 aa5.92□□□□□ -1.46
NUP54-214ENST00000514307 KMT2DO14686 5537 aa5.91□□□□□ -1.46
NUP54-214ENST00000514307 KRTAP19-7Q3SYF9 63 aa5.87□□□□□ -1.47
NUP54-214ENST00000514307 KRTAP19-4Q3LI73 84 aa5.85□□□□□ -1.47
NUP54-214ENST00000514307 KRTAP5-9P26371 169 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms