RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 HTN3P15516 51 aa1.58□□□□□ -2.16
NIPBL-204ENST00000504430 MTORP42345 2549 aa1.57□□□□□ -2.16
NIPBL-204ENST00000504430 OBSCNQ5VST9 7968 aa1.57□□□□□ -2.16
NIPBL-204ENST00000504430 H3BUX3 64 aa1.57□□□□□ -2.16
NIPBL-204ENST00000504430 FASNP49327 2511 aaKnown RBP1.57□□□□□ -2.16
NIPBL-204ENST00000504430 CFAP46Q8IYW2 2715 aa1.57□□□□□ -2.16
NIPBL-204ENST00000504430 TEX15Q9BXT5 2789 aa1.56□□□□□ -2.16
NIPBL-204ENST00000504430 USP9YO00507 2555 aaPredicted RBP1.56□□□□□ -2.16
NIPBL-204ENST00000504430 MYO18BQ8IUG5 2567 aa1.55□□□□□ -2.16
NIPBL-204ENST00000504430 SMG1Q96Q15 3661 aaKnown RBP1.55□□□□□ -2.16
NIPBL-204ENST00000504430 CSMD2Q7Z408 3487 aa1.55□□□□□ -2.16
NIPBL-204ENST00000504430 ACACBO00763 2458 aa1.54□□□□□ -2.16
NIPBL-204ENST00000504430 BIRC6Q9NR09 4857 aa1.54□□□□□ -2.16
NIPBL-204ENST00000504430 TLN2Q9Y4G6 2542 aa1.54□□□□□ -2.16
NIPBL-204ENST00000504430 LCE1CQ5T751 118 aa1.54□□□□□ -2.16
NIPBL-204ENST00000504430 LCE1BQ5T7P3 118 aa1.54□□□□□ -2.16
NIPBL-204ENST00000504430 LYSTQ99698 3801 aa1.53□□□□□ -2.16
NIPBL-204ENST00000504430 TEP1Q99973 2627 aaKnown RBP1.53□□□□□ -2.17
NIPBL-204ENST00000504430 DEFB4AO15263 64 aa1.52□□□□□ -2.17
NIPBL-204ENST00000504430 MYO9AB2RTY4 2548 aa1.52□□□□□ -2.17
NIPBL-204ENST00000504430 KRTAP5-5Q701N2 237 aaPredicted RBP1.52□□□□□ -2.17
NIPBL-204ENST00000504430 PCLOQ9Y6V0 5065 aa1.52□□□□□ -2.17
NIPBL-204ENST00000504430 FLNBO75369 2602 aaKnown RBP1.51□□□□□ -2.17
NIPBL-204ENST00000504430 EYSQ5T1H1 3165 aa1.51□□□□□ -2.17
NIPBL-204ENST00000504430 HIVEP1P15822 2718 aa1.5□□□□□ -2.17
NIPBL-204ENST00000504430 NBPF19A0A087WUL8 3843 aa1.5□□□□□ -2.17
NIPBL-204ENST00000504430 AHNAKQ09666 5890 aaKnown RBP1.5□□□□□ -2.17
NIPBL-204ENST00000504430 COL7A1Q02388 2944 aa1.49□□□□□ -2.17
NIPBL-204ENST00000504430 ANKRD11Q6UB99 2663 aaPredicted RBP1.49□□□□□ -2.17
NIPBL-204ENST00000504430 CENPEQ02224 2701 aa1.48□□□□□ -2.17
NIPBL-204ENST00000504430 NSD1Q96L73 2696 aaPredicted RBP1.48□□□□□ -2.17
NIPBL-204ENST00000504430 KRTAP4-3Q9BYR4 195 aa1.48□□□□□ -2.17
NIPBL-204ENST00000504430 ITPR2Q14571 2701 aa1.47□□□□□ -2.17
NIPBL-204ENST00000504430 SPART-AS1P0CW21 52 aa1.47□□□□□ -2.17
NIPBL-204ENST00000504430 RYR3Q15413 4870 aa1.47□□□□□ -2.17
NIPBL-204ENST00000504430 HRNRQ86YZ3 2850 aaPredicted RBP1.47□□□□□ -2.17
NIPBL-204ENST00000504430 AKAP9Q99996 3911 aa1.46□□□□□ -2.17
NIPBL-204ENST00000504430 KRTAP5-2Q701N4 177 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 NBEAL1Q6ZS30 2694 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 TGP01266 2768 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 NIPBLQ6KC79 2804 aaeCLIP1.46□□□□□ -2.186e-7■■□□□ 12.1
NIPBL-204ENST00000504430 RYR1P21817 5038 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 DEFB135Q30KP9 77 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 SVEP1Q4LDE5 3571 aa1.46□□□□□ -2.18
NIPBL-204ENST00000504430 DNAH11Q96DT5 4516 aa1.45□□□□□ -2.18
NIPBL-204ENST00000504430 STAB1Q9NY15 2570 aa1.45□□□□□ -2.18
NIPBL-204ENST00000504430 MXRA5Q9NR99 2828 aa1.44□□□□□ -2.18
NIPBL-204ENST00000504430 ZANQ9Y493 2812 aa1.44□□□□□ -2.18
NIPBL-204ENST00000504430 U3KQA8 63 aa1.44□□□□□ -2.18
NIPBL-204ENST00000504430 STAB2Q8WWQ8 2551 aa1.44□□□□□ -2.18
NIPBL-204ENST00000504430 LINC01556Q5JQF7 62 aa1.43□□□□□ -2.18
NIPBL-204ENST00000504430 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
NIPBL-204ENST00000504430 KRTAP2-3P0C7H8 128 aa1.43□□□□□ -2.18
NIPBL-204ENST00000504430 KRTAP2-4Q9BYR9 128 aa1.43□□□□□ -2.18
NIPBL-204ENST00000504430 KRTAP2-1Q9BYU5 128 aa1.43□□□□□ -2.18
NIPBL-204ENST00000504430 M0QZ58 72 aa1.42□□□□□ -2.18
NIPBL-204ENST00000504430 CMYA5Q8N3K9 4069 aa1.42□□□□□ -2.18
NIPBL-204ENST00000504430 FAT2Q9NYQ8 4349 aa1.41□□□□□ -2.18
NIPBL-204ENST00000504430 ITPR3Q14573 2671 aa1.41□□□□□ -2.18
NIPBL-204ENST00000504430 SYNE1Q8NF91 8797 aaKnown RBP1.41□□□□□ -2.18
NIPBL-204ENST00000504430 DNHD1Q96M86 4753 aa1.41□□□□□ -2.18
NIPBL-204ENST00000504430 TENM1Q9UKZ4 2725 aa1.41□□□□□ -2.18
NIPBL-204ENST00000504430 IGSF10Q6WRI0 2623 aa1.4□□□□□ -2.18
NIPBL-204ENST00000504430 CEP295Q9C0D2 2601 aa1.4□□□□□ -2.18
NIPBL-204ENST00000504430 C9orf92A6NGG3 77 aa1.4□□□□□ -2.19
NIPBL-204ENST00000504430 SSPOA2VEC9 5147 aa1.4□□□□□ -2.19
NIPBL-204ENST00000504430 NEBP20929 6669 aa1.39□□□□□ -2.19
NIPBL-204ENST00000504430 HERC2O95714 4834 aa1.39□□□□□ -2.19
NIPBL-204ENST00000504430 MYCBP2O75592 4640 aa1.38□□□□□ -2.19
NIPBL-204ENST00000504430 SMR3AQ99954 134 aa1.38□□□□□ -2.19
NIPBL-204ENST00000504430 KIAA1109Q2LD37 5005 aa1.38□□□□□ -2.19
NIPBL-204ENST00000504430 DEFB124Q8NES8 71 aa1.38□□□□□ -2.19
NIPBL-204ENST00000504430 FLNAP21333 2647 aaKnown RBP1.38□□□□□ -2.19
NIPBL-204ENST00000504430 NOTCH1P46531 2555 aa1.37□□□□□ -2.19
NIPBL-204ENST00000504430 VPS13CQ709C8 3753 aa1.36□□□□□ -2.19
NIPBL-204ENST00000504430 TENM3Q9P273 2699 aa1.36□□□□□ -2.19
NIPBL-204ENST00000504430 RYR2Q92736 4967 aa1.35□□□□□ -2.19
NIPBL-204ENST00000504430 KMT2AQ03164 3969 aa1.35□□□□□ -2.19
NIPBL-204ENST00000504430 H3BNG1 76 aa1.35□□□□□ -2.19
NIPBL-204ENST00000504430 ZNF469Q96JG9 3925 aaPredicted RBP1.34□□□□□ -2.19
NIPBL-204ENST00000504430 TNP1P09430 55 aa1.34□□□□□ -2.2
NIPBL-204ENST00000504430 MGAM2Q2M2H8 2515 aa1.33□□□□□ -2.2
NIPBL-204ENST00000504430 KRTAP20-1Q3LI63 56 aa1.33□□□□□ -2.2
NIPBL-204ENST00000504430 PRM1P04553 51 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 KRTAP19-3Q7Z4W3 81 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 DNAH8Q96JB1 4490 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 VPS13DQ5THJ4 4388 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 TNXBP22105 4242 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 HECTD4Q9Y4D8 3996 aa1.32□□□□□ -2.2
NIPBL-204ENST00000504430 EPPK1P58107 5090 aaKnown RBP1.31□□□□□ -2.2
NIPBL-204ENST00000504430 CRCT1Q9UGL9 99 aa1.31□□□□□ -2.2
NIPBL-204ENST00000504430 DNAH10Q8IVF4 4471 aa1.31□□□□□ -2.2
NIPBL-204ENST00000504430 TRRAPQ9Y4A5 3859 aa1.31□□□□□ -2.2
NIPBL-204ENST00000504430 FRAS1Q86XX4 4008 aa1.29□□□□□ -2.2
NIPBL-204ENST00000504430 M0R2T5 61 aa1.29□□□□□ -2.2
NIPBL-204ENST00000504430 KRTAP5-8O75690 187 aa1.28□□□□□ -2.2
NIPBL-204ENST00000504430 HYDINQ4G0P3 5121 aa1.28□□□□□ -2.21
NIPBL-204ENST00000504430 DYNC2H1Q8NCM8 4307 aaKnown RBP1.27□□□□□ -2.21
NIPBL-204ENST00000504430 PKHD1L1Q86WI1 4243 aa1.26□□□□□ -2.21
NIPBL-204ENST00000504430 UBR4Q5T4S7 5183 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms