RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 H0YAA0 97 aa8.86□□□□□ -0.99
COL6A1-206ENST00000498614 H3BS24 57 aa8.81□□□□□ -1
COL6A1-206ENST00000498614 KRTAP3-3Q9BYR6 98 aa8.81□□□□□ -1
COL6A1-206ENST00000498614 KRTAP3-2Q9BYR7 98 aa8.81□□□□□ -1
COL6A1-206ENST00000498614 KRTAP3-1Q9BYR8 98 aa8.81□□□□□ -1
COL6A1-206ENST00000498614 A8MUU9 505 aa8.8□□□□□ -1
COL6A1-206ENST00000498614 C20orf166-AS1Q96NR2 134 aa8.8□□□□□ -1
COL6A1-206ENST00000498614 FAT3Q8TDW7 4589 aa8.78□□□□□ -1
COL6A1-206ENST00000498614 TNXBP22105 4242 aa8.77□□□□□ -1.01
COL6A1-206ENST00000498614 ABCA13Q86UQ4 5058 aa8.77□□□□□ -1.01
COL6A1-206ENST00000498614 HERC2O95714 4834 aa8.76□□□□□ -1.01
COL6A1-206ENST00000498614 A0A1B0GU33 70 aa8.75□□□□□ -1.01
COL6A1-206ENST00000498614 LCE2DQ5TA82 110 aaPredicted RBP8.72□□□□□ -1.01
COL6A1-206ENST00000498614 H1FX-AS1Q4G0G2 97 aa8.72□□□□□ -1.01
COL6A1-206ENST00000498614 DMBT1Q9UGM3 2413 aaPredicted RBP8.69□□□□□ -1.02
COL6A1-206ENST00000498614 KRTAP10-8P60410 259 aa8.64□□□□□ -1.03
COL6A1-206ENST00000498614 KRTAP25-1Q3LHN0 102 aa8.64□□□□□ -1.03
COL6A1-206ENST00000498614 MT1HL1P0DM35 61 aa8.61□□□□□ -1.03
COL6A1-206ENST00000498614 PCLOQ9Y6V0 5065 aa8.6□□□□□ -1.03
COL6A1-206ENST00000498614 COX6B2Q6YFQ2 88 aa8.57□□□□□ -1.04
COL6A1-206ENST00000498614 CRIPTQ9P021 101 aa8.53□□□□□ -1.04
COL6A1-206ENST00000498614 K7ERS5 55 aa8.49□□□□□ -1.05
COL6A1-206ENST00000498614 ROMO1P60602 79 aa8.44□□□□□ -1.06
COL6A1-206ENST00000498614 RPL37P61927 97 aaKnown RBP8.43□□□□□ -1.06
COL6A1-206ENST00000498614 XP32Q5T750 250 aa8.42□□□□□ -1.06
COL6A1-206ENST00000498614 KRTAP10-6P60371 365 aaPredicted RBP8.42□□□□□ -1.06
COL6A1-206ENST00000498614 HERC1Q15751 4861 aa8.4□□□□□ -1.06
COL6A1-206ENST00000498614 KRTAP13-4Q3LI77 160 aa8.39□□□□□ -1.07
COL6A1-206ENST00000498614 LPAP08519 4548 aa8.37□□□□□ -1.07
COL6A1-206ENST00000498614 A0A0D9SG42 100 aa8.35□□□□□ -1.07
COL6A1-206ENST00000498614 A0A0A0MQY5 61 aa8.32□□□□□ -1.08
COL6A1-206ENST00000498614 S4R3F8 94 aa8.26□□□□□ -1.09
COL6A1-206ENST00000498614 TPRXLQ17RH7 258 aa8.24□□□□□ -1.09
COL6A1-206ENST00000498614 P0C880 135 aa8.24□□□□□ -1.09
COL6A1-206ENST00000498614 LRP2P98164 4655 aa8.23□□□□□ -1.09
COL6A1-206ENST00000498614 C10orf95Q9H7T3 257 aa8.17□□□□□ -1.1
COL6A1-206ENST00000498614 KRTAP12-2P59991 146 aa8.13□□□□□ -1.11
COL6A1-206ENST00000498614 HMCN2Q8NDA2 5059 aa8.12□□□□□ -1.11
COL6A1-206ENST00000498614 SPINT4Q6UDR6 99 aa8.1□□□□□ -1.11
COL6A1-206ENST00000498614 KRTAP12-1P59990 96 aa8.04□□□□□ -1.12
COL6A1-206ENST00000498614 MUC2Q02817 5179 aa7.99□□□□□ -1.13
COL6A1-206ENST00000498614 KRTAP15-1Q3LI76 137 aa7.95□□□□□ -1.14
COL6A1-206ENST00000498614 UBR4Q5T4S7 5183 aa7.92□□□□□ -1.14
COL6A1-206ENST00000498614 M0QZ58 72 aa7.89□□□□□ -1.15
COL6A1-206ENST00000498614 NDUFAF8A1L188 74 aa7.85□□□□□ -1.15
COL6A1-206ENST00000498614 RNF213Q63HN8 5207 aa7.84□□□□□ -1.15
COL6A1-206ENST00000498614 KRTAP4-1Q9BYQ7 146 aa7.82□□□□□ -1.16
COL6A1-206ENST00000498614 SEC61BP60468 96 aaKnown RBP7.82□□□□□ -1.16
COL6A1-206ENST00000498614 MUC17Q685J3 4493 aa7.81□□□□□ -1.16
COL6A1-206ENST00000498614 R4GN34 69 aa7.68□□□□□ -1.18
COL6A1-206ENST00000498614 FAT4Q6V0I7 4981 aa7.62□□□□□ -1.19
COL6A1-206ENST00000498614 LORP23490 312 aaPredicted RBP7.61□□□□□ -1.19
COL6A1-206ENST00000498614 LCE2BO14633 110 aa7.6□□□□□ -1.19
COL6A1-206ENST00000498614 KRTAP19-2Q3LHN2 52 aa7.57□□□□□ -1.2
COL6A1-206ENST00000498614 LCE2CQ5TA81 110 aa7.55□□□□□ -1.2
COL6A1-206ENST00000498614 LCE2AQ5TA79 106 aaPredicted RBP7.49□□□□□ -1.21
COL6A1-206ENST00000498614 PLAC4Q8WY50 150 aa7.48□□□□□ -1.21
COL6A1-206ENST00000498614 FLGP20930 4061 aaPredicted RBP7.41□□□□□ -1.22
COL6A1-206ENST00000498614 CAMK2N1Q7Z7J9 78 aa7.32□□□□□ -1.24
COL6A1-206ENST00000498614 PP632Q6XCG6 107 aa7.28□□□□□ -1.24
COL6A1-206ENST00000498614 MT1HP80294 61 aa7.27□□□□□ -1.25
COL6A1-206ENST00000498614 M0R2T5 61 aa7.24□□□□□ -1.25
COL6A1-206ENST00000498614 LUZP6Q538Z0 58 aa7.16□□□□□ -1.26
COL6A1-206ENST00000498614 TNP1P09430 55 aa7.06□□□□□ -1.28
COL6A1-206ENST00000498614 KRTAP9-8Q9BYQ0 159 aa6.98□□□□□ -1.29
COL6A1-206ENST00000498614 KRTAP23-1A1A580 65 aa6.97□□□□□ -1.29
COL6A1-206ENST00000498614 SPRR2GQ9BYE4 73 aa6.95□□□□□ -1.3
COL6A1-206ENST00000498614 KRTAP19-1Q8IUB9 90 aa6.95□□□□□ -1.3
COL6A1-206ENST00000498614 MT2AP02795 61 aa6.94□□□□□ -1.3
COL6A1-206ENST00000498614 SPRR5A0A1B0GTR4 108 aa6.93□□□□□ -1.3
COL6A1-206ENST00000498614 MT1FP04733 61 aa6.93□□□□□ -1.3
COL6A1-206ENST00000498614 KRTAP10-10P60014 251 aa6.91□□□□□ -1.3
COL6A1-206ENST00000498614 KRTAP9-3Q9BYQ3 159 aa6.72□□□□□ -1.33
COL6A1-206ENST00000498614 LCE3AQ5TA76 89 aa6.71□□□□□ -1.34
COL6A1-206ENST00000498614 USH2AO75445 5202 aa6.68□□□□□ -1.34
COL6A1-206ENST00000498614 FSIP2Q5CZC0 6907 aa6.66□□□□□ -1.34
COL6A1-206ENST00000498614 KRTAP19-8Q3LI54 63 aa6.65□□□□□ -1.34
COL6A1-206ENST00000498614 MT1BP07438 61 aa6.6□□□□□ -1.35
COL6A1-206ENST00000498614 KRTAP10-5P60370 271 aa6.54□□□□□ -1.36
COL6A1-206ENST00000498614 MT1XP80297 61 aa6.53□□□□□ -1.36
COL6A1-206ENST00000498614 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
COL6A1-206ENST00000498614 SSPOA2VEC9 5147 aa6.39□□□□□ -1.39
COL6A1-206ENST00000498614 KRTAP10-12P60413 245 aa6.38□□□□□ -1.39
COL6A1-206ENST00000498614 KRTAP10-7P60409 375 aaPredicted RBP6.37□□□□□ -1.39
COL6A1-206ENST00000498614 KRTAP12-3P60328 96 aa6.36□□□□□ -1.39
COL6A1-206ENST00000498614 KRTAP9-2Q9BYQ4 174 aa6.36□□□□□ -1.39
COL6A1-206ENST00000498614 PRO2289Q9P1D8 64 aa6.3□□□□□ -1.4
COL6A1-206ENST00000498614 INE1O15225 51 aa6.23□□□□□ -1.41
COL6A1-206ENST00000498614 KRTAP19-6Q3LI70 58 aa6.14□□□□□ -1.43
COL6A1-206ENST00000498614 FCGBPQ9Y6R7 5405 aaPredicted RBP6.13□□□□□ -1.43
COL6A1-206ENST00000498614 KMT2DO14686 5537 aa6.13□□□□□ -1.43
COL6A1-206ENST00000498614 KRTAP19-5Q3LI72 72 aa6.08□□□□□ -1.44
COL6A1-206ENST00000498614 CRCT1Q9UGL9 99 aa6.08□□□□□ -1.44
COL6A1-206ENST00000498614 KRTAP4-8A0A0G2JLE6 195 aa6.01□□□□□ -1.45
COL6A1-206ENST00000498614 KRTAP4-8Q9BYQ9 185 aa6.01□□□□□ -1.45
COL6A1-206ENST00000498614 LCE3CQ5T5A8 94 aa6□□□□□ -1.45
COL6A1-206ENST00000498614 MACF1Q9UPN3 7388 aaKnown RBP5.94□□□□□ -1.46
COL6A1-206ENST00000498614 KRTAP9-6A0A140TA67 174 aa5.87□□□□□ -1.47
COL6A1-206ENST00000498614 KRTAP9-6A8MVA2 160 aa5.85□□□□□ -1.47
COL6A1-206ENST00000498614 SYNE2Q8WXH0 6885 aaKnown RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 530 ms