RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 KRTAP3-3Q9BYR6 98 aa6.04□□□□□ -1.44
HDAC4-210ENST00000493582 KRTAP3-2Q9BYR7 98 aa6.04□□□□□ -1.44
HDAC4-210ENST00000493582 HYDINQ4G0P3 5121 aa6.01□□□□□ -1.45
HDAC4-210ENST00000493582 S4R3F8 94 aa5.99□□□□□ -1.45
HDAC4-210ENST00000493582 J3QL48 77 aa5.99□□□□□ -1.45
HDAC4-210ENST00000493582 KRTAP12-2P59991 146 aa5.99□□□□□ -1.45
HDAC4-210ENST00000493582 SACSQ9NZJ4 4579 aa5.99□□□□□ -1.45
HDAC4-210ENST00000493582 SMR3BP02814 79 aaPredicted RBP5.98□□□□□ -1.45
HDAC4-210ENST00000493582 PKHD1P08F94 4074 aa5.97□□□□□ -1.45
HDAC4-210ENST00000493582 PKHD1L1Q86WI1 4243 aa5.93□□□□□ -1.46
HDAC4-210ENST00000493582 FAT1Q14517 4588 aa5.9□□□□□ -1.46
HDAC4-210ENST00000493582 KRTAP10-8P60410 259 aa5.9□□□□□ -1.47
HDAC4-210ENST00000493582 KRTAP12-1P59990 96 aa5.88□□□□□ -1.47
HDAC4-210ENST00000493582 XP32Q5T750 250 aa5.85□□□□□ -1.47
HDAC4-210ENST00000493582 SEC61BP60468 96 aaKnown RBP5.83□□□□□ -1.48
HDAC4-210ENST00000493582 APOBP04114 4563 aaKnown RBP5.83□□□□□ -1.48
HDAC4-210ENST00000493582 HSPG2P98160 4391 aa5.83□□□□□ -1.48
HDAC4-210ENST00000493582 DYNC1H1Q14204 4646 aaKnown RBP5.82□□□□□ -1.48
HDAC4-210ENST00000493582 LUZP6Q538Z0 58 aa5.78□□□□□ -1.48
HDAC4-210ENST00000493582 MYCBP2O75592 4640 aa5.78□□□□□ -1.48
HDAC4-210ENST00000493582 KRTAP10-4P60372 401 aaPredicted RBP5.76□□□□□ -1.49
HDAC4-210ENST00000493582 LRP1Q07954 4544 aaKnown RBP5.74□□□□□ -1.49
HDAC4-210ENST00000493582 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
HDAC4-210ENST00000493582 M0QZ58 72 aa5.68□□□□□ -1.5
HDAC4-210ENST00000493582 KMT2CQ8NEZ4 4911 aaKnown RBP5.67□□□□□ -1.5
HDAC4-210ENST00000493582 PLAC4Q8WY50 150 aa5.67□□□□□ -1.5
HDAC4-210ENST00000493582 LPAP08519 4548 aa5.64□□□□□ -1.51
HDAC4-210ENST00000493582 TNXBP22105 4242 aa5.64□□□□□ -1.51
HDAC4-210ENST00000493582 A0A1B0GVY2 172 aa5.57□□□□□ -1.52
HDAC4-210ENST00000493582 R4GN34 69 aa5.54□□□□□ -1.52
HDAC4-210ENST00000493582 LRP2P98164 4655 aa5.49□□□□□ -1.53
HDAC4-210ENST00000493582 RYR3Q15413 4870 aa5.48□□□□□ -1.53
HDAC4-210ENST00000493582 RYR2Q92736 4967 aa5.46□□□□□ -1.53
HDAC4-210ENST00000493582 LORP23490 312 aaPredicted RBP5.46□□□□□ -1.54
HDAC4-210ENST00000493582 Q5VSD8 79 aa5.39□□□□□ -1.55
HDAC4-210ENST00000493582 KIAA1109Q2LD37 5005 aa5.36□□□□□ -1.55
HDAC4-210ENST00000493582 EPPK1P58107 5090 aaKnown RBP5.34□□□□□ -1.55
HDAC4-210ENST00000493582 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
HDAC4-210ENST00000493582 CAMK2N1Q7Z7J9 78 aa5.32□□□□□ -1.56
HDAC4-210ENST00000493582 KRTAP17-1Q9BYP8 105 aa5.3□□□□□ -1.56
HDAC4-210ENST00000493582 MT1HL1P0DM35 61 aa5.29□□□□□ -1.56
HDAC4-210ENST00000493582 RYR1P21817 5038 aa5.25□□□□□ -1.57
HDAC4-210ENST00000493582 ABCA13Q86UQ4 5058 aa5.18□□□□□ -1.58
HDAC4-210ENST00000493582 SPRR5A0A1B0GTR4 108 aa5.14□□□□□ -1.59
HDAC4-210ENST00000493582 MUC17Q685J3 4493 aa5.13□□□□□ -1.59
HDAC4-210ENST00000493582 TNP1P09430 55 aa5.12□□□□□ -1.59
HDAC4-210ENST00000493582 KRTAP4-1Q9BYQ7 146 aa5.11□□□□□ -1.59
HDAC4-210ENST00000493582 BIRC6Q9NR09 4857 aa5.1□□□□□ -1.59
HDAC4-210ENST00000493582 KRTAP4-5Q9BYR2 181 aa5.1□□□□□ -1.59
HDAC4-210ENST00000493582 MUC2Q02817 5179 aa5.03□□□□□ -1.6
HDAC4-210ENST00000493582 KRTAP19-2Q3LHN2 52 aa5□□□□□ -1.61
HDAC4-210ENST00000493582 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
HDAC4-210ENST00000493582 HERC2O95714 4834 aa4.99□□□□□ -1.61
HDAC4-210ENST00000493582 PCLOQ9Y6V0 5065 aa4.98□□□□□ -1.61
HDAC4-210ENST00000493582 PRO2289Q9P1D8 64 aa4.96□□□□□ -1.61
HDAC4-210ENST00000493582 HERC1Q15751 4861 aa4.92□□□□□ -1.62
HDAC4-210ENST00000493582 FLGP20930 4061 aaPredicted RBP4.87□□□□□ -1.63
HDAC4-210ENST00000493582 LCE3AQ5TA76 89 aa4.85□□□□□ -1.63
HDAC4-210ENST00000493582 INE1O15225 51 aa4.8□□□□□ -1.64
HDAC4-210ENST00000493582 RNF213Q63HN8 5207 aa4.77□□□□□ -1.65
HDAC4-210ENST00000493582 FAT4Q6V0I7 4981 aa4.72□□□□□ -1.65
HDAC4-210ENST00000493582 KRTAP19-1Q8IUB9 90 aa4.71□□□□□ -1.66
HDAC4-210ENST00000493582 UBR4Q5T4S7 5183 aa4.71□□□□□ -1.66
HDAC4-210ENST00000493582 SPRR2GQ9BYE4 73 aa4.69□□□□□ -1.66
HDAC4-210ENST00000493582 KRTAP8-1Q8IUC2 63 aa4.65□□□□□ -1.66
HDAC4-210ENST00000493582 KRTAP12-3P60328 96 aa4.57□□□□□ -1.68
HDAC4-210ENST00000493582 KRTAP10-12P60413 245 aa4.55□□□□□ -1.68
HDAC4-210ENST00000493582 LCE2CQ5TA81 110 aa4.55□□□□□ -1.68
HDAC4-210ENST00000493582 HMCN2Q8NDA2 5059 aa4.55□□□□□ -1.68
HDAC4-210ENST00000493582 M0R2T5 61 aa4.54□□□□□ -1.68
HDAC4-210ENST00000493582 KRTAP10-10P60014 251 aa4.5□□□□□ -1.69
HDAC4-210ENST00000493582 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
HDAC4-210ENST00000493582 MT1FP04733 61 aa4.48□□□□□ -1.69
HDAC4-210ENST00000493582 MT1XP80297 61 aa4.46□□□□□ -1.7
HDAC4-210ENST00000493582 MT2AP02795 61 aa4.44□□□□□ -1.7
HDAC4-210ENST00000493582 KRTAP10-7P60409 375 aaPredicted RBP4.42□□□□□ -1.7
HDAC4-210ENST00000493582 MT1HP80294 61 aa4.4□□□□□ -1.71
HDAC4-210ENST00000493582 MT1BP07438 61 aa4.39□□□□□ -1.71
HDAC4-210ENST00000493582 KRTAP19-8Q3LI54 63 aa4.39□□□□□ -1.71
HDAC4-210ENST00000493582 KRTAP9-8Q9BYQ0 159 aa4.37□□□□□ -1.71
HDAC4-210ENST00000493582 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
HDAC4-210ENST00000493582 LCE3CQ5T5A8 94 aa4.31□□□□□ -1.72
HDAC4-210ENST00000493582 KRTAP19-5Q3LI72 72 aa4.28□□□□□ -1.72
HDAC4-210ENST00000493582 KMT2DO14686 5537 aa4.27□□□□□ -1.73
HDAC4-210ENST00000493582 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
HDAC4-210ENST00000493582 KRTAP2-3P0C7H8 128 aa4.16□□□□□ -1.74
HDAC4-210ENST00000493582 KRTAP2-4Q9BYR9 128 aa4.16□□□□□ -1.74
HDAC4-210ENST00000493582 KRTAP2-1Q9BYU5 128 aa4.16□□□□□ -1.74
HDAC4-210ENST00000493582 USH2AO75445 5202 aa4.16□□□□□ -1.74
HDAC4-210ENST00000493582 KRTAP9-3Q9BYQ3 159 aa4.14□□□□□ -1.75
HDAC4-210ENST00000493582 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
HDAC4-210ENST00000493582 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
HDAC4-210ENST00000493582 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
HDAC4-210ENST00000493582 LCE2AQ5TA79 106 aaPredicted RBP4.07□□□□□ -1.76
HDAC4-210ENST00000493582 KRTAP19-7Q3SYF9 63 aa3.97□□□□□ -1.77
HDAC4-210ENST00000493582 LCE2BO14633 110 aa3.97□□□□□ -1.77
HDAC4-210ENST00000493582 MT1LQ93083 61 aa3.87□□□□□ -1.79
HDAC4-210ENST00000493582 KRTAP12-4P60329 112 aa3.85□□□□□ -1.79
HDAC4-210ENST00000493582 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
HDAC4-210ENST00000493582 MT1EP04732 61 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms