RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-215ENST00000491592 TENM3Q9P273 2699 aa2.37□□□□□ -2.03
RTN4-215ENST00000491592 SPINK1P00995 79 aa2.36□□□□□ -2.03
RTN4-215ENST00000491592 VWFP04275 2813 aa2.35□□□□□ -2.03
RTN4-215ENST00000491592 RPS29P62273 56 aaKnown RBP2.35□□□□□ -2.03
RTN4-215ENST00000491592 PLAC4Q8WY50 150 aa2.35□□□□□ -2.03
RTN4-215ENST00000491592 LCE3DQ9BYE3 92 aa2.35□□□□□ -2.03
RTN4-215ENST00000491592 HELZ2Q9BYK8 2649 aaKnown RBP2.34□□□□□ -2.03
RTN4-215ENST00000491592 FASNP49327 2511 aaKnown RBP2.34□□□□□ -2.04
RTN4-215ENST00000491592 PKD1L1Q8TDX9 2849 aa2.34□□□□□ -2.04
RTN4-215ENST00000491592 NSD1Q96L73 2696 aaPredicted RBP2.34□□□□□ -2.04
RTN4-215ENST00000491592 COX6B2Q6YFQ2 88 aa2.33□□□□□ -2.04
RTN4-215ENST00000491592 ZNF469Q96JG9 3925 aaPredicted RBP2.33□□□□□ -2.04
RTN4-215ENST00000491592 FLNBO75369 2602 aaKnown RBP2.32□□□□□ -2.04
RTN4-215ENST00000491592 ITPR2Q14571 2701 aa2.32□□□□□ -2.04
RTN4-215ENST00000491592 MAST4O15021 2626 aa2.32□□□□□ -2.04
RTN4-215ENST00000491592 BAHCC1Q9P281 2608 aa2.32□□□□□ -2.04
RTN4-215ENST00000491592 DNAH1Q9P2D7 4330 aa2.31□□□□□ -2.04
RTN4-215ENST00000491592 HECTD1Q9ULT8 2610 aa2.3□□□□□ -2.04
RTN4-215ENST00000491592 TENM1Q9UKZ4 2725 aa2.3□□□□□ -2.04
RTN4-215ENST00000491592 RPL37P61927 97 aaKnown RBP2.3□□□□□ -2.04
RTN4-215ENST00000491592 SRRM2Q9UQ35 2752 aaKnown RBP2.29□□□□□ -2.04
RTN4-215ENST00000491592 OTOGQ6ZRI0 2925 aa2.29□□□□□ -2.04
RTN4-215ENST00000491592 TENM4Q6N022 2769 aa2.29□□□□□ -2.04
RTN4-215ENST00000491592 CUBNO60494 3623 aa2.28□□□□□ -2.05
RTN4-215ENST00000491592 SPRR5A0A1B0GTR4 108 aa2.26□□□□□ -2.05
RTN4-215ENST00000491592 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
RTN4-215ENST00000491592 CRIPTQ9P021 101 aa2.26□□□□□ -2.05
RTN4-215ENST00000491592 FLG2Q5D862 2391 aaPredicted RBP2.24□□□□□ -2.05
RTN4-215ENST00000491592 NOTCH1P46531 2555 aa2.24□□□□□ -2.05
RTN4-215ENST00000491592 NBEAL1Q6ZS30 2694 aa2.24□□□□□ -2.05
RTN4-215ENST00000491592 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
RTN4-215ENST00000491592 HUWE1Q7Z6Z7 4374 aaKnown RBP2.23□□□□□ -2.05
RTN4-215ENST00000491592 STAB1Q9NY15 2570 aa2.22□□□□□ -2.05
RTN4-215ENST00000491592 COL6A5A8TX70 2615 aa2.21□□□□□ -2.05
RTN4-215ENST00000491592 TRRAPQ9Y4A5 3859 aa2.21□□□□□ -2.05
RTN4-215ENST00000491592 STAB2Q8WWQ8 2551 aa2.21□□□□□ -2.06
RTN4-215ENST00000491592 DNAH3Q8TD57 4116 aa2.21□□□□□ -2.06
RTN4-215ENST00000491592 TGP01266 2768 aa2.2□□□□□ -2.06
RTN4-215ENST00000491592 KRTAP10-10P60014 251 aa2.2□□□□□ -2.06
RTN4-215ENST00000491592 S4R3F8 94 aa2.2□□□□□ -2.06
RTN4-215ENST00000491592 FBN1P35555 2871 aaKnown RBP2.2□□□□□ -2.06
RTN4-215ENST00000491592 C9orf92A6NGG3 77 aa2.19□□□□□ -2.06
RTN4-215ENST00000491592 MGAM2Q2M2H8 2515 aa2.19□□□□□ -2.06
RTN4-215ENST00000491592 A0A0D9SG42 100 aa2.18□□□□□ -2.06
RTN4-215ENST00000491592 M0QZ58 72 aa2.18□□□□□ -2.06
RTN4-215ENST00000491592 KRTAP13-4Q3LI77 160 aa2.18□□□□□ -2.06
RTN4-215ENST00000491592 DNAH8Q96JB1 4490 aa2.18□□□□□ -2.06
RTN4-215ENST00000491592 ANK2Q01484 3957 aa2.17□□□□□ -2.06
RTN4-215ENST00000491592 DYNC2H1Q8NCM8 4307 aaKnown RBP2.17□□□□□ -2.06
RTN4-215ENST00000491592 DNAH10Q8IVF4 4471 aa2.16□□□□□ -2.06
RTN4-215ENST00000491592 DNAH9Q9NYC9 4486 aa2.16□□□□□ -2.06
RTN4-215ENST00000491592 MEGF8Q7Z7M0 2845 aa2.15□□□□□ -2.06
RTN4-215ENST00000491592 C10orf95Q9H7T3 257 aa2.15□□□□□ -2.07
RTN4-215ENST00000491592 DNAH17Q9UFH2 4485 aa2.14□□□□□ -2.07
RTN4-215ENST00000491592 COL7A1Q02388 2944 aa2.14□□□□□ -2.07
RTN4-215ENST00000491592 KRTAP12-1P59990 96 aa2.14□□□□□ -2.07
RTN4-215ENST00000491592 CMYA5Q8N3K9 4069 aa2.13□□□□□ -2.07
RTN4-215ENST00000491592 VPS13DQ5THJ4 4388 aa2.13□□□□□ -2.07
RTN4-215ENST00000491592 FBN3Q75N90 2809 aa2.12□□□□□ -2.07
RTN4-215ENST00000491592 DMBT1Q9UGM3 2413 aaPredicted RBP2.11□□□□□ -2.07
RTN4-215ENST00000491592 LYSTQ99698 3801 aa2.09□□□□□ -2.07
RTN4-215ENST00000491592 KRTAP10-4P60372 401 aaPredicted RBP2.08□□□□□ -2.08
RTN4-215ENST00000491592 PRKDCP78527 4128 aaKnown RBP2.08□□□□□ -2.08
RTN4-215ENST00000491592 DNAH11Q96DT5 4516 aa2.08□□□□□ -2.08
RTN4-215ENST00000491592 FRAS1Q86XX4 4008 aa2.07□□□□□ -2.08
RTN4-215ENST00000491592 HECTD4Q9Y4D8 3996 aa2.07□□□□□ -2.08
RTN4-215ENST00000491592 DNAH6Q9C0G6 4158 aa2.06□□□□□ -2.08
RTN4-215ENST00000491592 SMR3BP02814 79 aaPredicted RBP2.06□□□□□ -2.08
RTN4-215ENST00000491592 DNAH2Q9P225 4427 aa2.05□□□□□ -2.08
RTN4-215ENST00000491592 CSMD3Q7Z407 3707 aa2.05□□□□□ -2.08
RTN4-215ENST00000491592 DNAH7Q8WXX0 4024 aa2.05□□□□□ -2.08
RTN4-215ENST00000491592 PLECQ15149 4684 aaKnown RBP2.03□□□□□ -2.08
RTN4-215ENST00000491592 SACSQ9NZJ4 4579 aa2.03□□□□□ -2.08
RTN4-215ENST00000491592 KMT2AQ03164 3969 aa1.99□□□□□ -2.09
RTN4-215ENST00000491592 LRP1BQ9NZR2 4599 aa1.98□□□□□ -2.09
RTN4-215ENST00000491592 PKHD1L1Q86WI1 4243 aa1.98□□□□□ -2.09
RTN4-215ENST00000491592 STARD9Q9P2P6 4700 aa1.97□□□□□ -2.09
RTN4-215ENST00000491592 VPS13BQ7Z7G8 4022 aa1.97□□□□□ -2.09
RTN4-215ENST00000491592 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
RTN4-215ENST00000491592 DNAH5Q8TE73 4624 aa1.97□□□□□ -2.09
RTN4-215ENST00000491592 PKD1P98161 4303 aa1.94□□□□□ -2.1
RTN4-215ENST00000491592 PKHD1P08F94 4074 aa1.93□□□□□ -2.1
RTN4-215ENST00000491592 Q5VSD8 79 aa1.93□□□□□ -2.1
RTN4-215ENST00000491592 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
RTN4-215ENST00000491592 TNP1P09430 55 aa1.92□□□□□ -2.1
RTN4-215ENST00000491592 MT1HL1P0DM35 61 aa1.91□□□□□ -2.1
RTN4-215ENST00000491592 FAT2Q9NYQ8 4349 aa1.9□□□□□ -2.11
RTN4-215ENST00000491592 KRTAP21-3Q3LHN1 58 aa1.89□□□□□ -2.11
RTN4-215ENST00000491592 TNXBP22105 4242 aa1.88□□□□□ -2.11
RTN4-215ENST00000491592 LRP1Q07954 4544 aaKnown RBP1.88□□□□□ -2.11
RTN4-215ENST00000491592 APOBP04114 4563 aaKnown RBP1.87□□□□□ -2.11
RTN4-215ENST00000491592 FAT3Q8TDW7 4589 aa1.83□□□□□ -2.12
RTN4-215ENST00000491592 FAT1Q14517 4588 aa1.82□□□□□ -2.12
RTN4-215ENST00000491592 DYNC1H1Q14204 4646 aaKnown RBP1.82□□□□□ -2.12
RTN4-215ENST00000491592 KRTAP12-4P60329 112 aa1.81□□□□□ -2.12
RTN4-215ENST00000491592 KRTAP6-3Q3LI67 103 aa1.81□□□□□ -2.12
RTN4-215ENST00000491592 HSPG2P98160 4391 aa1.81□□□□□ -2.12
RTN4-215ENST00000491592 KRTAP19-2Q3LHN2 52 aa1.8□□□□□ -2.12
RTN4-215ENST00000491592 KRTAP12-3P60328 96 aa1.79□□□□□ -2.12
RTN4-215ENST00000491592 KRTAP4-1Q9BYQ7 146 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms