RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 KRTAP10-11P60412 298 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 TPRXLQ17RH7 258 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 KRTAP1-5Q9BYS1 174 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 RYR2Q92736 4967 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 BIRC6Q9NR09 4857 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 SPACA4Q8TDM5 124 aa2.62□□□□□ -1.99
SNRNP40-206ENST00000489853 DYNC2H1Q8NCM8 4307 aaKnown RBP2.61□□□□□ -1.99
SNRNP40-206ENST00000489853 STAB2Q8WWQ8 2551 aa2.6□□□□□ -1.99
SNRNP40-206ENST00000489853 LYSTQ99698 3801 aa2.6□□□□□ -1.99
SNRNP40-206ENST00000489853 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
SNRNP40-206ENST00000489853 SACSQ9NZJ4 4579 aa2.58□□□□□ -2
SNRNP40-206ENST00000489853 RPL37P61927 97 aaKnown RBP2.58□□□□□ -2
SNRNP40-206ENST00000489853 COX6B2Q6YFQ2 88 aa2.58□□□□□ -2
SNRNP40-206ENST00000489853 LUZP6Q538Z0 58 aa2.58□□□□□ -2
SNRNP40-206ENST00000489853 FRAS1Q86XX4 4008 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 NBDYA0A0U1RRE5 68 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 UBE2DNLQ8IWF7 75 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 DNAH7Q8WXX0 4024 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 KRTAP5-9P26371 169 aa2.56□□□□□ -2
SNRNP40-206ENST00000489853 HUWE1Q7Z6Z7 4374 aaKnown RBP2.54□□□□□ -2
SNRNP40-206ENST00000489853 Q6ZRN7 208 aaPredicted RBP2.54□□□□□ -2
SNRNP40-206ENST00000489853 APLNQ9ULZ1 77 aa2.54□□□□□ -2
SNRNP40-206ENST00000489853 STARD9Q9P2P6 4700 aa2.53□□□□□ -2
SNRNP40-206ENST00000489853 KRTAP10-7P60409 375 aaPredicted RBP2.53□□□□□ -2
SNRNP40-206ENST00000489853 C10orf95Q9H7T3 257 aa2.53□□□□□ -2
SNRNP40-206ENST00000489853 HERC2O95714 4834 aa2.52□□□□□ -2.01
SNRNP40-206ENST00000489853 RYR1P21817 5038 aa2.52□□□□□ -2.01
SNRNP40-206ENST00000489853 KRTAP13-2Q52LG2 175 aa2.51□□□□□ -2.01
SNRNP40-206ENST00000489853 KIAA1109Q2LD37 5005 aa2.51□□□□□ -2.01
SNRNP40-206ENST00000489853 DNAH8Q96JB1 4490 aa2.5□□□□□ -2.01
SNRNP40-206ENST00000489853 DNAH10Q8IVF4 4471 aa2.49□□□□□ -2.01
SNRNP40-206ENST00000489853 KRTAP10-6P60371 365 aaPredicted RBP2.48□□□□□ -2.01
SNRNP40-206ENST00000489853 A0A0D9SG42 100 aa2.48□□□□□ -2.01
SNRNP40-206ENST00000489853 KMT2AQ03164 3969 aa2.48□□□□□ -2.01
SNRNP40-206ENST00000489853 LCE1AQ5T7P2 110 aa2.48□□□□□ -2.01
SNRNP40-206ENST00000489853 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
SNRNP40-206ENST00000489853 KRTAP13-4Q3LI77 160 aa2.47□□□□□ -2.01
SNRNP40-206ENST00000489853 S4R3F8 94 aa2.47□□□□□ -2.01
SNRNP40-206ENST00000489853 KRTAP5-4Q6L8H1 288 aa2.46□□□□□ -2.02
SNRNP40-206ENST00000489853 HECTD4Q9Y4D8 3996 aa2.46□□□□□ -2.02
SNRNP40-206ENST00000489853 ABCA13Q86UQ4 5058 aa2.46□□□□□ -2.02
SNRNP40-206ENST00000489853 PLECQ15149 4684 aaKnown RBP2.45□□□□□ -2.02
SNRNP40-206ENST00000489853 DMBT1Q9UGM3 2413 aaPredicted RBP2.44□□□□□ -2.02
SNRNP40-206ENST00000489853 RPS29P62273 56 aaKnown RBP2.43□□□□□ -2.02
SNRNP40-206ENST00000489853 VPS13DQ5THJ4 4388 aa2.43□□□□□ -2.02
SNRNP40-206ENST00000489853 KRTAP1-4P0C5Y4 121 aa2.42□□□□□ -2.02
SNRNP40-206ENST00000489853 KRTAP12-2P59991 146 aa2.42□□□□□ -2.02
SNRNP40-206ENST00000489853 PLAC4Q8WY50 150 aa2.42□□□□□ -2.02
SNRNP40-206ENST00000489853 DNAH17Q9UFH2 4485 aa2.42□□□□□ -2.02
SNRNP40-206ENST00000489853 FAT2Q9NYQ8 4349 aa2.41□□□□□ -2.02
SNRNP40-206ENST00000489853 DNAH2Q9P225 4427 aa2.41□□□□□ -2.02
SNRNP40-206ENST00000489853 PKHD1P08F94 4074 aa2.41□□□□□ -2.02
SNRNP40-206ENST00000489853 KRTAP12-1P59990 96 aa2.4□□□□□ -2.02
SNRNP40-206ENST00000489853 HERC1Q15751 4861 aa2.4□□□□□ -2.03
SNRNP40-206ENST00000489853 PKD1P98161 4303 aa2.4□□□□□ -2.03
SNRNP40-206ENST00000489853 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
SNRNP40-206ENST00000489853 UBR4Q5T4S7 5183 aa2.38□□□□□ -2.03
SNRNP40-206ENST00000489853 C9orf92A6NGG3 77 aa2.37□□□□□ -2.03
SNRNP40-206ENST00000489853 CAMK2N1Q7Z7J9 78 aa2.36□□□□□ -2.03
SNRNP40-206ENST00000489853 M0QZ58 72 aa2.36□□□□□ -2.03
SNRNP40-206ENST00000489853 HSPG2P98160 4391 aa2.36□□□□□ -2.03
SNRNP40-206ENST00000489853 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
SNRNP40-206ENST00000489853 A0A1B0GVY2 172 aa2.34□□□□□ -2.03
SNRNP40-206ENST00000489853 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
SNRNP40-206ENST00000489853 KRTAP2-2Q9BYT5 123 aa2.34□□□□□ -2.03
SNRNP40-206ENST00000489853 DYNC1H1Q14204 4646 aaKnown RBP2.34□□□□□ -2.03
SNRNP40-206ENST00000489853 DNAH11Q96DT5 4516 aa2.34□□□□□ -2.04
SNRNP40-206ENST00000489853 APOBP04114 4563 aaKnown RBP2.34□□□□□ -2.04
SNRNP40-206ENST00000489853 DNAH6Q9C0G6 4158 aa2.33□□□□□ -2.04
SNRNP40-206ENST00000489853 KRTAP10-1P60331 282 aa2.3□□□□□ -2.04
SNRNP40-206ENST00000489853 PP632Q6XCG6 107 aa2.3□□□□□ -2.04
SNRNP40-206ENST00000489853 LRP1BQ9NZR2 4599 aa2.3□□□□□ -2.04
SNRNP40-206ENST00000489853 MYCBP2O75592 4640 aa2.29□□□□□ -2.04
SNRNP40-206ENST00000489853 PRO2289Q9P1D8 64 aa2.28□□□□□ -2.04
SNRNP40-206ENST00000489853 KRTAP10-8P60410 259 aa2.27□□□□□ -2.05
SNRNP40-206ENST00000489853 LCE1FQ5T754 118 aa2.27□□□□□ -2.05
SNRNP40-206ENST00000489853 FAT1Q14517 4588 aa2.26□□□□□ -2.05
SNRNP40-206ENST00000489853 DNAH5Q8TE73 4624 aa2.26□□□□□ -2.05
SNRNP40-206ENST00000489853 RNF213Q63HN8 5207 aa2.25□□□□□ -2.05
SNRNP40-206ENST00000489853 SPRR5A0A1B0GTR4 108 aa2.23□□□□□ -2.05
SNRNP40-206ENST00000489853 MT3P25713 68 aa2.23□□□□□ -2.05
SNRNP40-206ENST00000489853 HMCN2Q8NDA2 5059 aa2.22□□□□□ -2.05
SNRNP40-206ENST00000489853 VPS13BQ7Z7G8 4022 aa2.22□□□□□ -2.05
SNRNP40-206ENST00000489853 LRP1Q07954 4544 aaKnown RBP2.21□□□□□ -2.06
SNRNP40-206ENST00000489853 INE1O15225 51 aa2.21□□□□□ -2.06
SNRNP40-206ENST00000489853 R4GN34 69 aa2.2□□□□□ -2.06
SNRNP40-206ENST00000489853 PKHD1L1Q86WI1 4243 aa2.2□□□□□ -2.06
SNRNP40-206ENST00000489853 SMR3BP02814 79 aaPredicted RBP2.14□□□□□ -2.07
SNRNP40-206ENST00000489853 KRTAP10-4P60372 401 aaPredicted RBP2.14□□□□□ -2.07
SNRNP40-206ENST00000489853 Q5VSD8 79 aa2.13□□□□□ -2.07
SNRNP40-206ENST00000489853 LRP2P98164 4655 aa2.13□□□□□ -2.07
SNRNP40-206ENST00000489853 MUC2Q02817 5179 aa2.13□□□□□ -2.07
SNRNP40-206ENST00000489853 LCE3CQ5T5A8 94 aa2.13□□□□□ -2.07
SNRNP40-206ENST00000489853 FAT3Q8TDW7 4589 aa2.12□□□□□ -2.07
SNRNP40-206ENST00000489853 KRTAP5-2Q701N4 177 aa2.11□□□□□ -2.07
SNRNP40-206ENST00000489853 TNP1P09430 55 aa2.09□□□□□ -2.07
SNRNP40-206ENST00000489853 TNXBP22105 4242 aa2.09□□□□□ -2.08
SNRNP40-206ENST00000489853 MT1HL1P0DM35 61 aa2.08□□□□□ -2.08
SNRNP40-206ENST00000489853 KRTAP10-12P60413 245 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms