RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CYSTM1Q9H1C7 97 aa6.76□□□□□ -1.33
C9orf3-221ENST00000489562 ACYP2P14621 99 aa6.75□□□□□ -1.33
C9orf3-221ENST00000489562 LCA10Q71F78 164 aa6.73□□□□□ -1.33
C9orf3-221ENST00000489562 CSAG1Q6PB30 78 aa6.7□□□□□ -1.34
C9orf3-221ENST00000489562 KRTAP10-6P60371 365 aaPredicted RBP6.68□□□□□ -1.34
C9orf3-221ENST00000489562 ATP5EP56381 51 aaPredicted RBP6.66□□□□□ -1.34
C9orf3-221ENST00000489562 KRTAP3-3Q9BYR6 98 aa6.66□□□□□ -1.34
C9orf3-221ENST00000489562 LORP23490 312 aaPredicted RBP6.65□□□□□ -1.34
C9orf3-221ENST00000489562 CRCT1Q9UGL9 99 aa6.65□□□□□ -1.34
C9orf3-221ENST00000489562 CHKB-CPT1BH3BT56 60 aa6.63□□□□□ -1.35
C9orf3-221ENST00000489562 PCP4P48539 62 aa6.63□□□□□ -1.35
C9orf3-221ENST00000489562 TMEM258P61165 79 aa6.63□□□□□ -1.35
C9orf3-221ENST00000489562 SPTSSBQ8NFR3 76 aa6.62□□□□□ -1.35
C9orf3-221ENST00000489562 LCE2DQ5TA82 110 aaPredicted RBP6.6□□□□□ -1.35
C9orf3-221ENST00000489562 COA5Q86WW8 74 aa6.59□□□□□ -1.35
C9orf3-221ENST00000489562 FSIP2Q5CZC0 6907 aa6.58□□□□□ -1.36
C9orf3-221ENST00000489562 KRTAP9-8Q9BYQ0 159 aa6.57□□□□□ -1.36
C9orf3-221ENST00000489562 MT2AP02795 61 aa6.53□□□□□ -1.36
C9orf3-221ENST00000489562 H0YAA0 97 aa6.52□□□□□ -1.37
C9orf3-221ENST00000489562 KRTAP10-10P60014 251 aa6.48□□□□□ -1.37
C9orf3-221ENST00000489562 MT1FP04733 61 aa6.47□□□□□ -1.37
C9orf3-221ENST00000489562 ADM2Q7Z4H4 148 aa6.42□□□□□ -1.38
C9orf3-221ENST00000489562 SERP1Q9Y6X1 66 aa6.41□□□□□ -1.38
C9orf3-221ENST00000489562 CRIPTQ9P021 101 aa6.38□□□□□ -1.39
C9orf3-221ENST00000489562 KRTAP9-3Q9BYQ3 159 aa6.35□□□□□ -1.39
C9orf3-221ENST00000489562 SEC61GP60059 68 aa6.34□□□□□ -1.39
C9orf3-221ENST00000489562 KRTAP3-2Q9BYR7 98 aa6.34□□□□□ -1.39
C9orf3-221ENST00000489562 P0C880 135 aa6.32□□□□□ -1.4
C9orf3-221ENST00000489562 KRTAP9-7A8MTY7 169 aa6.31□□□□□ -1.4
C9orf3-221ENST00000489562 SPRR2GQ9BYE4 73 aa6.27□□□□□ -1.41
C9orf3-221ENST00000489562 A0A1B0GU69 56 aa6.26□□□□□ -1.41
C9orf3-221ENST00000489562 RPS28P62857 69 aaKnown RBP6.26□□□□□ -1.41
C9orf3-221ENST00000489562 KRTAP19-1Q8IUB9 90 aa6.25□□□□□ -1.41
C9orf3-221ENST00000489562 R4GN34 69 aa6.25□□□□□ -1.41
C9orf3-221ENST00000489562 LINC01558Q9Y6Z2 57 aa6.24□□□□□ -1.41
C9orf3-221ENST00000489562 PRR15LQ9BU68 103 aa6.23□□□□□ -1.41
C9orf3-221ENST00000489562 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.22□□□□□ -1.41
C9orf3-221ENST00000489562 M0QZ58 72 aa6.21□□□□□ -1.42
C9orf3-221ENST00000489562 LCE2BO14633 110 aa6.21□□□□□ -1.42
C9orf3-221ENST00000489562 SMIM26A0A096LP01 95 aa6.2□□□□□ -1.42
C9orf3-221ENST00000489562 V9GYY9 64 aa6.2□□□□□ -1.42
C9orf3-221ENST00000489562 A0A1B0GU33 70 aa6.16□□□□□ -1.42
C9orf3-221ENST00000489562 KRTAP19-8Q3LI54 63 aa6.16□□□□□ -1.42
C9orf3-221ENST00000489562 Q1T7F1 81 aa6.15□□□□□ -1.42
C9orf3-221ENST00000489562 Q5VV11 94 aa6.14□□□□□ -1.43
C9orf3-221ENST00000489562 KRTAP13-4Q3LI77 160 aa6.08□□□□□ -1.44
C9orf3-221ENST00000489562 LINC01554Q52M75 96 aa6.08□□□□□ -1.44
C9orf3-221ENST00000489562 MT1BP07438 61 aa6.06□□□□□ -1.44
C9orf3-221ENST00000489562 A6NN06 94 aa6.03□□□□□ -1.44
C9orf3-221ENST00000489562 SPATA8Q6RVD6 105 aa6.03□□□□□ -1.44
C9orf3-221ENST00000489562 UQCR11O14957 56 aa6.02□□□□□ -1.45
C9orf3-221ENST00000489562 PSPHP1O15172 72 aa6.02□□□□□ -1.45
C9orf3-221ENST00000489562 USH2AO75445 5202 aa6.02□□□□□ -1.45
C9orf3-221ENST00000489562 PLAC4Q8WY50 150 aa6.01□□□□□ -1.45
C9orf3-221ENST00000489562 A0A0D9SG42 100 aa5.95□□□□□ -1.46
C9orf3-221ENST00000489562 KRTAP19-6Q3LI70 58 aa5.95□□□□□ -1.46
C9orf3-221ENST00000489562 SSPOA2VEC9 5147 aa5.95□□□□□ -1.46
C9orf3-221ENST00000489562 MIR22HGQ0VDD5 57 aa5.9□□□□□ -1.46
C9orf3-221ENST00000489562 A8MU10 97 aa5.89□□□□□ -1.47
C9orf3-221ENST00000489562 A6NED7 52 aa5.88□□□□□ -1.47
C9orf3-221ENST00000489562 KRTAP12-1P59990 96 aa5.86□□□□□ -1.47
C9orf3-221ENST00000489562 PRO2289Q9P1D8 64 aa5.86□□□□□ -1.47
C9orf3-221ENST00000489562 KRTAP10-5P60370 271 aa5.85□□□□□ -1.47
C9orf3-221ENST00000489562 SPINT4Q6UDR6 99 aa5.85□□□□□ -1.47
C9orf3-221ENST00000489562 FCGBPQ9Y6R7 5405 aaPredicted RBP5.84□□□□□ -1.47
C9orf3-221ENST00000489562 MACF1Q9UPN3 7388 aaKnown RBP5.83□□□□□ -1.48
C9orf3-221ENST00000489562 CAMK2N1Q7Z7J9 78 aa5.82□□□□□ -1.48
C9orf3-221ENST00000489562 SYNE2Q8WXH0 6885 aaKnown RBP5.81□□□□□ -1.48
C9orf3-221ENST00000489562 KRTAP12-2P59991 146 aa5.81□□□□□ -1.48
C9orf3-221ENST00000489562 MT1XP80297 61 aa5.8□□□□□ -1.48
C9orf3-221ENST00000489562 K7ERS5 55 aa5.75□□□□□ -1.49
C9orf3-221ENST00000489562 CDC42SE1Q9NRR8 79 aa5.73□□□□□ -1.49
C9orf3-221ENST00000489562 KRTAP6-3Q3LI67 103 aa5.64□□□□□ -1.51
C9orf3-221ENST00000489562 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
C9orf3-221ENST00000489562 C10orf95Q9H7T3 257 aa5.55□□□□□ -1.52
C9orf3-221ENST00000489562 NEBP20929 6669 aa5.54□□□□□ -1.52
C9orf3-221ENST00000489562 KRTAP10-12P60413 245 aa5.53□□□□□ -1.52
C9orf3-221ENST00000489562 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
C9orf3-221ENST00000489562 TNP1P09430 55 aa5.49□□□□□ -1.53
C9orf3-221ENST00000489562 KRTAP20-1Q3LI63 56 aa5.49□□□□□ -1.53
C9orf3-221ENST00000489562 KRTAP25-1Q3LHN0 102 aa5.42□□□□□ -1.54
C9orf3-221ENST00000489562 ROMO1P60602 79 aa5.41□□□□□ -1.54
C9orf3-221ENST00000489562 KRTAP8-1Q8IUC2 63 aa5.38□□□□□ -1.55
C9orf3-221ENST00000489562 KRTAP4-8A0A0G2JLE6 195 aa5.37□□□□□ -1.55
C9orf3-221ENST00000489562 KRTAP4-8Q9BYQ9 185 aa5.37□□□□□ -1.55
C9orf3-221ENST00000489562 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
C9orf3-221ENST00000489562 KRTAP5-9P26371 169 aa5.31□□□□□ -1.56
C9orf3-221ENST00000489562 PRO0628Q9UI54 55 aa5.29□□□□□ -1.56
C9orf3-221ENST00000489562 KMT2DO14686 5537 aa5.27□□□□□ -1.57
C9orf3-221ENST00000489562 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
C9orf3-221ENST00000489562 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
C9orf3-221ENST00000489562 PMAIP1Q13794 54 aa5.26□□□□□ -1.57
C9orf3-221ENST00000489562 SPRR2FQ96RM1 72 aa5.24□□□□□ -1.57
C9orf3-221ENST00000489562 KRTAP2-3P0C7H8 128 aa5.2□□□□□ -1.58
C9orf3-221ENST00000489562 KRTAP2-4Q9BYR9 128 aa5.2□□□□□ -1.58
C9orf3-221ENST00000489562 PP632Q6XCG6 107 aa5.18□□□□□ -1.58
C9orf3-221ENST00000489562 KRTAP19-7Q3SYF9 63 aa5.17□□□□□ -1.58
C9orf3-221ENST00000489562 KRTAP19-5Q3LI72 72 aa5.16□□□□□ -1.58
C9orf3-221ENST00000489562 MDN1Q9NU22 5596 aa5.13□□□□□ -1.59
C9orf3-221ENST00000489562 MT1EP04732 61 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 149.8 ms