RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 KRTAP3-1Q9BYR8 98 aa6.79□□□□□ -1.32
HMGN1-216ENST00000486741 KRTAP10-4P60372 401 aaPredicted RBP6.79□□□□□ -1.32
HMGN1-216ENST00000486741 TPRXLQ17RH7 258 aa6.75□□□□□ -1.33
HMGN1-216ENST00000486741 DYNC1H1Q14204 4646 aaKnown RBP6.74□□□□□ -1.33
HMGN1-216ENST00000486741 P0C880 135 aa6.74□□□□□ -1.33
HMGN1-216ENST00000486741 FRAS1Q86XX4 4008 aa6.7□□□□□ -1.34
HMGN1-216ENST00000486741 DNAH6Q9C0G6 4158 aa6.69□□□□□ -1.34
HMGN1-216ENST00000486741 DYNC2H1Q8NCM8 4307 aaKnown RBP6.68□□□□□ -1.34
HMGN1-216ENST00000486741 ALMS1Q8TCU4 4167 aa6.66□□□□□ -1.34
HMGN1-216ENST00000486741 MT1HL1P0DM35 61 aa6.65□□□□□ -1.34
HMGN1-216ENST00000486741 KRTAP4-5Q9BYR2 181 aa6.65□□□□□ -1.34
HMGN1-216ENST00000486741 HYDINQ4G0P3 5121 aa6.62□□□□□ -1.35
HMGN1-216ENST00000486741 VPS13BQ7Z7G8 4022 aa6.61□□□□□ -1.35
HMGN1-216ENST00000486741 HECTD4Q9Y4D8 3996 aa6.59□□□□□ -1.35
HMGN1-216ENST00000486741 MYCBP2O75592 4640 aa6.58□□□□□ -1.36
HMGN1-216ENST00000486741 KIAA1109Q2LD37 5005 aa6.56□□□□□ -1.36
HMGN1-216ENST00000486741 RYR1P21817 5038 aa6.53□□□□□ -1.36
HMGN1-216ENST00000486741 SACSQ9NZJ4 4579 aa6.51□□□□□ -1.37
HMGN1-216ENST00000486741 PKHD1P08F94 4074 aa6.49□□□□□ -1.37
HMGN1-216ENST00000486741 LRP1Q07954 4544 aaKnown RBP6.48□□□□□ -1.37
HMGN1-216ENST00000486741 FAT2Q9NYQ8 4349 aa6.46□□□□□ -1.37
HMGN1-216ENST00000486741 KRTAP13-4Q3LI77 160 aa6.46□□□□□ -1.37
HMGN1-216ENST00000486741 PLAC4Q8WY50 150 aa6.46□□□□□ -1.37
HMGN1-216ENST00000486741 APOBP04114 4563 aaKnown RBP6.46□□□□□ -1.38
HMGN1-216ENST00000486741 KRTAP10-6P60371 365 aaPredicted RBP6.45□□□□□ -1.38
HMGN1-216ENST00000486741 RYR3Q15413 4870 aa6.44□□□□□ -1.38
HMGN1-216ENST00000486741 KRTAP3-3Q9BYR6 98 aa6.42□□□□□ -1.38
HMGN1-216ENST00000486741 KRTAP12-2P59991 146 aa6.42□□□□□ -1.38
HMGN1-216ENST00000486741 FAT3Q8TDW7 4589 aa6.41□□□□□ -1.38
HMGN1-216ENST00000486741 KMT2CQ8NEZ4 4911 aaKnown RBP6.37□□□□□ -1.39
HMGN1-216ENST00000486741 KRTAP17-1Q9BYP8 105 aa6.34□□□□□ -1.39
HMGN1-216ENST00000486741 RYR2Q92736 4967 aa6.32□□□□□ -1.4
HMGN1-216ENST00000486741 KRTAP3-2Q9BYR7 98 aa6.32□□□□□ -1.4
HMGN1-216ENST00000486741 KRTAP12-1P59990 96 aa6.31□□□□□ -1.4
HMGN1-216ENST00000486741 KRTAP10-10P60014 251 aa6.28□□□□□ -1.4
HMGN1-216ENST00000486741 PKD1P98161 4303 aa6.24□□□□□ -1.41
HMGN1-216ENST00000486741 TNP1P09430 55 aa6.23□□□□□ -1.41
HMGN1-216ENST00000486741 LRP2P98164 4655 aa6.13□□□□□ -1.43
HMGN1-216ENST00000486741 KRTAP4-1Q9BYQ7 146 aa6.12□□□□□ -1.43
HMGN1-216ENST00000486741 KRTAP15-1Q3LI76 137 aa6.11□□□□□ -1.43
HMGN1-216ENST00000486741 LORP23490 312 aaPredicted RBP6.1□□□□□ -1.43
HMGN1-216ENST00000486741 HSPG2P98160 4391 aa6.1□□□□□ -1.43
HMGN1-216ENST00000486741 PP632Q6XCG6 107 aa6.08□□□□□ -1.44
HMGN1-216ENST00000486741 HERC2O95714 4834 aa6.06□□□□□ -1.44
HMGN1-216ENST00000486741 EPPK1P58107 5090 aaKnown RBP6□□□□□ -1.45
HMGN1-216ENST00000486741 LPAP08519 4548 aa5.96□□□□□ -1.46
HMGN1-216ENST00000486741 PKHD1L1Q86WI1 4243 aa5.87□□□□□ -1.47
HMGN1-216ENST00000486741 ABCA13Q86UQ4 5058 aa5.81□□□□□ -1.48
HMGN1-216ENST00000486741 TNXBP22105 4242 aa5.81□□□□□ -1.48
HMGN1-216ENST00000486741 PRO2289Q9P1D8 64 aa5.76□□□□□ -1.49
HMGN1-216ENST00000486741 BIRC6Q9NR09 4857 aa5.74□□□□□ -1.49
HMGN1-216ENST00000486741 MT1HP80294 61 aa5.65□□□□□ -1.5
HMGN1-216ENST00000486741 MUC2Q02817 5179 aa5.62□□□□□ -1.51
HMGN1-216ENST00000486741 HERC1Q15751 4861 aa5.6□□□□□ -1.51
HMGN1-216ENST00000486741 PCLOQ9Y6V0 5065 aa5.57□□□□□ -1.52
HMGN1-216ENST00000486741 MT2AP02795 61 aa5.57□□□□□ -1.52
HMGN1-216ENST00000486741 MT1FP04733 61 aa5.54□□□□□ -1.52
HMGN1-216ENST00000486741 LCE3AQ5TA76 89 aa5.52□□□□□ -1.53
HMGN1-216ENST00000486741 RNF213Q63HN8 5207 aa5.51□□□□□ -1.53
HMGN1-216ENST00000486741 KRTAP10-12P60413 245 aa5.49□□□□□ -1.53
HMGN1-216ENST00000486741 SPRR2GQ9BYE4 73 aa5.46□□□□□ -1.54
HMGN1-216ENST00000486741 FAT4Q6V0I7 4981 aa5.45□□□□□ -1.54
HMGN1-216ENST00000486741 INE1O15225 51 aa5.43□□□□□ -1.54
HMGN1-216ENST00000486741 LCE2CQ5TA81 110 aa5.42□□□□□ -1.54
HMGN1-216ENST00000486741 KRTAP19-1Q8IUB9 90 aa5.41□□□□□ -1.54
HMGN1-216ENST00000486741 KRTAP19-2Q3LHN2 52 aa5.4□□□□□ -1.54
HMGN1-216ENST00000486741 UBR4Q5T4S7 5183 aa5.4□□□□□ -1.55
HMGN1-216ENST00000486741 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
HMGN1-216ENST00000486741 MUC17Q685J3 4493 aa5.38□□□□□ -1.55
HMGN1-216ENST00000486741 FLGP20930 4061 aaPredicted RBP5.31□□□□□ -1.56
HMGN1-216ENST00000486741 KRTAP9-8Q9BYQ0 159 aa5.28□□□□□ -1.56
HMGN1-216ENST00000486741 HMCN2Q8NDA2 5059 aa5.27□□□□□ -1.57
HMGN1-216ENST00000486741 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
HMGN1-216ENST00000486741 FSIP2Q5CZC0 6907 aa5.23□□□□□ -1.57
HMGN1-216ENST00000486741 MT1BP07438 61 aa5.16□□□□□ -1.58
HMGN1-216ENST00000486741 KRTAP19-8Q3LI54 63 aa5.15□□□□□ -1.58
HMGN1-216ENST00000486741 KRTAP10-7P60409 375 aaPredicted RBP5.15□□□□□ -1.59
HMGN1-216ENST00000486741 CRCT1Q9UGL9 99 aa5.14□□□□□ -1.59
HMGN1-216ENST00000486741 MT1XP80297 61 aa5.12□□□□□ -1.59
HMGN1-216ENST00000486741 KRTAP10-5P60370 271 aa5.09□□□□□ -1.59
HMGN1-216ENST00000486741 KRTAP9-3Q9BYQ3 159 aa5.08□□□□□ -1.6
HMGN1-216ENST00000486741 KRTAP19-5Q3LI72 72 aa5.06□□□□□ -1.6
HMGN1-216ENST00000486741 KRTAP8-1Q8IUC2 63 aa5.05□□□□□ -1.6
HMGN1-216ENST00000486741 KRTAP4-8A0A0G2JLE6 195 aa4.98□□□□□ -1.61
HMGN1-216ENST00000486741 KRTAP4-8Q9BYQ9 185 aa4.98□□□□□ -1.61
HMGN1-216ENST00000486741 LCE2BO14633 110 aa4.97□□□□□ -1.61
HMGN1-216ENST00000486741 USH2AO75445 5202 aa4.85□□□□□ -1.63
HMGN1-216ENST00000486741 LCE3CQ5T5A8 94 aa4.83□□□□□ -1.64
HMGN1-216ENST00000486741 SPRR2FQ96RM1 72 aa4.77□□□□□ -1.65
HMGN1-216ENST00000486741 LCE2AQ5TA79 106 aaPredicted RBP4.74□□□□□ -1.65
HMGN1-216ENST00000486741 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
HMGN1-216ENST00000486741 KRTAP4-7Q9BYR0 210 aa4.71□□□□□ -1.66
HMGN1-216ENST00000486741 KMT2DO14686 5537 aa4.67□□□□□ -1.66
HMGN1-216ENST00000486741 MT1GP13640 62 aa4.56□□□□□ -1.68
HMGN1-216ENST00000486741 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
HMGN1-216ENST00000486741 SYNE1Q8NF91 8797 aaKnown RBP4.53□□□□□ -1.68
HMGN1-216ENST00000486741 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
HMGN1-216ENST00000486741 MT1EP04732 61 aa4.5□□□□□ -1.69
HMGN1-216ENST00000486741 MT1LQ93083 61 aa4.5□□□□□ -1.69
HMGN1-216ENST00000486741 KRTAP19-7Q3SYF9 63 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 197.2 ms