RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 CYSTM1Q9H1C7 97 aa8.57□□□□□ -1.04
CHMP3-207ENST00000485465 SPANXA2-OT1Q8N9U9 137 aa8.55□□□□□ -1.04
CHMP3-207ENST00000485465 S4R3F8 94 aa8.55□□□□□ -1.04
CHMP3-207ENST00000485465 H7BZZ5 65 aa8.53□□□□□ -1.04
CHMP3-207ENST00000485465 LCA10Q71F78 164 aa8.5□□□□□ -1.05
CHMP3-207ENST00000485465 ACYP2P14621 99 aa8.47□□□□□ -1.05
CHMP3-207ENST00000485465 KRTAP10-6P60371 365 aaPredicted RBP8.47□□□□□ -1.05
CHMP3-207ENST00000485465 CSAG1Q6PB30 78 aa8.41□□□□□ -1.06
CHMP3-207ENST00000485465 KRTAP9-8Q9BYQ0 159 aa8.34□□□□□ -1.07
CHMP3-207ENST00000485465 CHKB-CPT1BH3BT56 60 aa8.32□□□□□ -1.08
CHMP3-207ENST00000485465 PCP4P48539 62 aa8.32□□□□□ -1.08
CHMP3-207ENST00000485465 ATP5EP56381 51 aaPredicted RBP8.29□□□□□ -1.08
CHMP3-207ENST00000485465 TMEM258P61165 79 aa8.29□□□□□ -1.08
CHMP3-207ENST00000485465 COA5Q86WW8 74 aa8.29□□□□□ -1.08
CHMP3-207ENST00000485465 MT2AP02795 61 aa8.28□□□□□ -1.08
CHMP3-207ENST00000485465 SPTSSBQ8NFR3 76 aa8.25□□□□□ -1.09
CHMP3-207ENST00000485465 MT1FP04733 61 aa8.22□□□□□ -1.09
CHMP3-207ENST00000485465 KRTAP10-10P60014 251 aa8.2□□□□□ -1.1
CHMP3-207ENST00000485465 H0YAA0 97 aa8.18□□□□□ -1.1
CHMP3-207ENST00000485465 ADM2Q7Z4H4 148 aa8.12□□□□□ -1.11
CHMP3-207ENST00000485465 KRTAP9-3Q9BYQ3 159 aa8.06□□□□□ -1.12
CHMP3-207ENST00000485465 SERP1Q9Y6X1 66 aa8.04□□□□□ -1.12
CHMP3-207ENST00000485465 P0C880 135 aa8.01□□□□□ -1.13
CHMP3-207ENST00000485465 CRIPTQ9P021 101 aa7.98□□□□□ -1.13
CHMP3-207ENST00000485465 KRTAP9-2Q9BYQ4 174 aa7.94□□□□□ -1.14
CHMP3-207ENST00000485465 SEC61GP60059 68 aa7.92□□□□□ -1.14
CHMP3-207ENST00000485465 KRTAP19-1Q8IUB9 90 aa7.92□□□□□ -1.14
CHMP3-207ENST00000485465 SPRR2GQ9BYE4 73 aa7.91□□□□□ -1.14
CHMP3-207ENST00000485465 R4GN34 69 aa7.86□□□□□ -1.15
CHMP3-207ENST00000485465 A0A1B0GU69 56 aa7.85□□□□□ -1.15
CHMP3-207ENST00000485465 LINC01558Q9Y6Z2 57 aa7.84□□□□□ -1.15
CHMP3-207ENST00000485465 RPS28P62857 69 aaKnown RBP7.83□□□□□ -1.16
CHMP3-207ENST00000485465 M0QZ58 72 aa7.82□□□□□ -1.16
CHMP3-207ENST00000485465 USH2AO75445 5202 aa7.81□□□□□ -1.16
CHMP3-207ENST00000485465 KRTAP19-8Q3LI54 63 aa7.77□□□□□ -1.17
CHMP3-207ENST00000485465 PRR15LQ9BU68 103 aa7.77□□□□□ -1.17
CHMP3-207ENST00000485465 SMIM26A0A096LP01 95 aa7.76□□□□□ -1.17
CHMP3-207ENST00000485465 A0A1B0GU33 70 aa7.74□□□□□ -1.17
CHMP3-207ENST00000485465 V9GYY9 64 aa7.73□□□□□ -1.17
CHMP3-207ENST00000485465 Q5VV11 94 aa7.72□□□□□ -1.17
CHMP3-207ENST00000485465 Q1T7F1 81 aa7.71□□□□□ -1.18
CHMP3-207ENST00000485465 KRTAP13-4Q3LI77 160 aa7.71□□□□□ -1.18
CHMP3-207ENST00000485465 MT1BP07438 61 aa7.69□□□□□ -1.18
CHMP3-207ENST00000485465 LOC100996750A0A140TA64 210 aa7.68□□□□□ -1.18
CHMP3-207ENST00000485465 LINC01554Q52M75 96 aa7.68□□□□□ -1.18
CHMP3-207ENST00000485465 KRTAP4-6Q9BYQ5 205 aa7.68□□□□□ -1.18
CHMP3-207ENST00000485465 FSIP2Q5CZC0 6907 aa7.67□□□□□ -1.18
CHMP3-207ENST00000485465 SPATA8Q6RVD6 105 aa7.63□□□□□ -1.19
CHMP3-207ENST00000485465 PSPHP1O15172 72 aa7.6□□□□□ -1.19
CHMP3-207ENST00000485465 CRCT1Q9UGL9 99 aa7.6□□□□□ -1.19
CHMP3-207ENST00000485465 SSPOA2VEC9 5147 aa7.6□□□□□ -1.19
CHMP3-207ENST00000485465 H3BS24 57 aa7.59□□□□□ -1.19
CHMP3-207ENST00000485465 PLAC4Q8WY50 150 aa7.56□□□□□ -1.2
CHMP3-207ENST00000485465 A6NN06 94 aa7.55□□□□□ -1.2
CHMP3-207ENST00000485465 A0A0D9SG42 100 aa7.53□□□□□ -1.2
CHMP3-207ENST00000485465 UQCR11O14957 56 aa7.53□□□□□ -1.2
CHMP3-207ENST00000485465 KRTAP19-6Q3LI70 58 aa7.53□□□□□ -1.2
CHMP3-207ENST00000485465 KRTAP9-6A0A140TA67 174 aa7.49□□□□□ -1.21
CHMP3-207ENST00000485465 A8MU10 97 aa7.47□□□□□ -1.21
CHMP3-207ENST00000485465 MIR22HGQ0VDD5 57 aa7.42□□□□□ -1.22
CHMP3-207ENST00000485465 KRTAP12-1P59990 96 aa7.4□□□□□ -1.22
CHMP3-207ENST00000485465 KRTAP10-5P60370 271 aa7.4□□□□□ -1.22
CHMP3-207ENST00000485465 SPINT4Q6UDR6 99 aa7.39□□□□□ -1.23
CHMP3-207ENST00000485465 A6NED7 52 aa7.37□□□□□ -1.23
CHMP3-207ENST00000485465 FCGBPQ9Y6R7 5405 aaPredicted RBP7.37□□□□□ -1.23
CHMP3-207ENST00000485465 KRTAP12-2P59991 146 aa7.35□□□□□ -1.23
CHMP3-207ENST00000485465 MT1XP80297 61 aa7.35□□□□□ -1.23
CHMP3-207ENST00000485465 PRO2289Q9P1D8 64 aa7.33□□□□□ -1.24
CHMP3-207ENST00000485465 CAMK2N1Q7Z7J9 78 aa7.31□□□□□ -1.24
CHMP3-207ENST00000485465 KRTAP4-8Q9BYQ9 185 aa7.19□□□□□ -1.26
CHMP3-207ENST00000485465 CDC42SE1Q9NRR8 79 aa7.18□□□□□ -1.26
CHMP3-207ENST00000485465 K7ERS5 55 aa7.16□□□□□ -1.26
CHMP3-207ENST00000485465 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.05□□□□□ -1.28
CHMP3-207ENST00000485465 KRTAP10-7P60409 375 aaPredicted RBP7.03□□□□□ -1.28
CHMP3-207ENST00000485465 C10orf95Q9H7T3 257 aa7.03□□□□□ -1.28
CHMP3-207ENST00000485465 KRTAP4-12Q9BQ66 201 aa7.02□□□□□ -1.29
CHMP3-207ENST00000485465 MACF1Q9UPN3 7388 aaKnown RBP7.01□□□□□ -1.29
CHMP3-207ENST00000485465 KRTAP10-12P60413 245 aa6.99□□□□□ -1.29
CHMP3-207ENST00000485465 BRK1Q8WUW1 75 aa6.97□□□□□ -1.29
CHMP3-207ENST00000485465 KRTAP19-4Q3LI73 84 aa6.92□□□□□ -1.3
CHMP3-207ENST00000485465 SVIPQ8NHG7 77 aa6.91□□□□□ -1.3
CHMP3-207ENST00000485465 LCE3BQ5TA77 95 aa6.9□□□□□ -1.3
CHMP3-207ENST00000485465 TNP1P09430 55 aa6.89□□□□□ -1.31
CHMP3-207ENST00000485465 SYNE2Q8WXH0 6885 aaKnown RBP6.87□□□□□ -1.31
CHMP3-207ENST00000485465 KMT2DO14686 5537 aa6.86□□□□□ -1.31
CHMP3-207ENST00000485465 KRTAP4-8A0A0G2JLE6 195 aa6.85□□□□□ -1.31
CHMP3-207ENST00000485465 KRTAP9-7A8MTY7 169 aa6.79□□□□□ -1.32
CHMP3-207ENST00000485465 ROMO1P60602 79 aa6.79□□□□□ -1.32
CHMP3-207ENST00000485465 KRTAP8-1Q8IUC2 63 aa6.79□□□□□ -1.32
CHMP3-207ENST00000485465 KRTAP25-1Q3LHN0 102 aa6.78□□□□□ -1.32
CHMP3-207ENST00000485465 KRTAP6-3Q3LI67 103 aa6.78□□□□□ -1.32
CHMP3-207ENST00000485465 KRTAP5-9P26371 169 aa6.7□□□□□ -1.34
CHMP3-207ENST00000485465 KRTAP9-9Q9BYP9 154 aa6.69□□□□□ -1.34
CHMP3-207ENST00000485465 KRTAP9-4Q9BYQ2 154 aa6.69□□□□□ -1.34
CHMP3-207ENST00000485465 LCE3AQ5TA76 89 aa6.67□□□□□ -1.34
CHMP3-207ENST00000485465 SPRR2FQ96RM1 72 aa6.63□□□□□ -1.35
CHMP3-207ENST00000485465 PRO0628Q9UI54 55 aa6.6□□□□□ -1.35
CHMP3-207ENST00000485465 PMAIP1Q13794 54 aa6.58□□□□□ -1.36
CHMP3-207ENST00000485465 KRTAP23-1A1A580 65 aa6.56□□□□□ -1.36
CHMP3-207ENST00000485465 KRTAP19-7Q3SYF9 63 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms