RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 KRTAP13-3Q3SY46 172 aa4.43□□□□□ -1.7
USP4-211ENST00000485450 PSORS1C2Q9UIG4 136 aa4.42□□□□□ -1.7
USP4-211ENST00000485450 IGLV7-43P04211 117 aa4.42□□□□□ -1.7
USP4-211ENST00000485450 HMCN2Q8NDA2 5059 aa4.42□□□□□ -1.7
USP4-211ENST00000485450 Q5W150 140 aa4.4□□□□□ -1.71
USP4-211ENST00000485450 SRRM2Q9UQ35 2752 aaKnown RBP4.4□□□□□ -1.71
USP4-211ENST00000485450 LINC00304Q8N9R0 145 aa4.36□□□□□ -1.71
USP4-211ENST00000485450 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
USP4-211ENST00000485450 RPS29P62273 56 aaKnown RBP4.35□□□□□ -1.71
USP4-211ENST00000485450 LCE2BO14633 110 aa4.35□□□□□ -1.71
USP4-211ENST00000485450 NDUFAF8A1L188 74 aa4.34□□□□□ -1.71
USP4-211ENST00000485450 KRTAP15-1Q3LI76 137 aa4.34□□□□□ -1.71
USP4-211ENST00000485450 C20orf166-AS1Q96NR2 134 aa4.34□□□□□ -1.71
USP4-211ENST00000485450 KRTAP16-1A8MUX0 517 aa4.34□□□□□ -1.72
USP4-211ENST00000485450 SMR3BP02814 79 aaPredicted RBP4.33□□□□□ -1.72
USP4-211ENST00000485450 HERC1Q15751 4861 aa4.32□□□□□ -1.72
USP4-211ENST00000485450 KRTAP13-2Q52LG2 175 aa4.3□□□□□ -1.72
USP4-211ENST00000485450 CRIPTQ9P021 101 aa4.29□□□□□ -1.72
USP4-211ENST00000485450 IGKV2-30P06310 120 aa4.29□□□□□ -1.72
USP4-211ENST00000485450 LCE2CQ5TA81 110 aa4.29□□□□□ -1.72
USP4-211ENST00000485450 H0YAA0 97 aa4.27□□□□□ -1.73
USP4-211ENST00000485450 FLG2Q5D862 2391 aaPredicted RBP4.25□□□□□ -1.73
USP4-211ENST00000485450 LCE2AQ5TA79 106 aaPredicted RBP4.24□□□□□ -1.73
USP4-211ENST00000485450 SSBP3-AS1Q7Z2R9 100 aa4.22□□□□□ -1.73
USP4-211ENST00000485450 IGKV2D-30A0A075B6S6 120 aa4.21□□□□□ -1.73
USP4-211ENST00000485450 TPRXLQ17RH7 258 aa4.21□□□□□ -1.74
USP4-211ENST00000485450 SPINK1P00995 79 aa4.16□□□□□ -1.74
USP4-211ENST00000485450 A0A1B0GU33 70 aa4.15□□□□□ -1.74
USP4-211ENST00000485450 LPAP08519 4548 aa4.15□□□□□ -1.74
USP4-211ENST00000485450 LUZP6Q538Z0 58 aa4.15□□□□□ -1.75
USP4-211ENST00000485450 ANAPC11Q9NYG5 84 aa4.15□□□□□ -1.75
USP4-211ENST00000485450 H1FX-AS1Q4G0G2 97 aa4.13□□□□□ -1.75
USP4-211ENST00000485450 TYMSOSQ8TAI1 123 aa4.13□□□□□ -1.75
USP4-211ENST00000485450 SPINT4Q6UDR6 99 aa4.12□□□□□ -1.75
USP4-211ENST00000485450 K7ERS5 55 aa4.12□□□□□ -1.75
USP4-211ENST00000485450 XP32Q5T750 250 aa4.09□□□□□ -1.76
USP4-211ENST00000485450 C10orf95Q9H7T3 257 aa4.07□□□□□ -1.76
USP4-211ENST00000485450 UBR4Q5T4S7 5183 aa4.06□□□□□ -1.76
USP4-211ENST00000485450 LORP23490 312 aaPredicted RBP4.06□□□□□ -1.76
USP4-211ENST00000485450 RNF213Q63HN8 5207 aa4.04□□□□□ -1.76
USP4-211ENST00000485450 CAMK2N1Q7Z7J9 78 aa4.04□□□□□ -1.76
USP4-211ENST00000485450 LRP2P98164 4655 aa4.03□□□□□ -1.76
USP4-211ENST00000485450 COX6B2Q6YFQ2 88 aa4.01□□□□□ -1.77
USP4-211ENST00000485450 FLGP20930 4061 aaPredicted RBP4.01□□□□□ -1.77
USP4-211ENST00000485450 KRTAP19-2Q3LHN2 52 aa4□□□□□ -1.77
USP4-211ENST00000485450 RPL37P61927 97 aaKnown RBP3.99□□□□□ -1.77
USP4-211ENST00000485450 DMBT1Q9UGM3 2413 aaPredicted RBP3.98□□□□□ -1.77
USP4-211ENST00000485450 KRTAP3-1Q9BYR8 98 aa3.97□□□□□ -1.77
USP4-211ENST00000485450 KRTAP4-1Q9BYQ7 146 aa3.92□□□□□ -1.78
USP4-211ENST00000485450 KRTAP13-4Q3LI77 160 aa3.9□□□□□ -1.78
USP4-211ENST00000485450 KRTAP10-6P60371 365 aaPredicted RBP3.88□□□□□ -1.79
USP4-211ENST00000485450 A0A0D9SG42 100 aa3.86□□□□□ -1.79
USP4-211ENST00000485450 FAT4Q6V0I7 4981 aa3.85□□□□□ -1.79
USP4-211ENST00000485450 MUC2Q02817 5179 aa3.85□□□□□ -1.79
USP4-211ENST00000485450 S4R3F8 94 aa3.84□□□□□ -1.8
USP4-211ENST00000485450 KRTAP12-2P59991 146 aa3.8□□□□□ -1.8
USP4-211ENST00000485450 MT1HP80294 61 aa3.76□□□□□ -1.81
USP4-211ENST00000485450 KRTAP12-1P59990 96 aa3.75□□□□□ -1.81
USP4-211ENST00000485450 C9orf92A6NGG3 77 aa3.73□□□□□ -1.81
USP4-211ENST00000485450 PLAC4Q8WY50 150 aa3.73□□□□□ -1.81
USP4-211ENST00000485450 KRTAP9-8Q9BYQ0 159 aa3.64□□□□□ -1.83
USP4-211ENST00000485450 M0QZ58 72 aa3.62□□□□□ -1.83
USP4-211ENST00000485450 PRO2289Q9P1D8 64 aa3.62□□□□□ -1.83
USP4-211ENST00000485450 KRTAP9-3Q9BYQ3 159 aa3.53□□□□□ -1.84
USP4-211ENST00000485450 SPRR5A0A1B0GTR4 108 aa3.53□□□□□ -1.84
USP4-211ENST00000485450 MT2AP02795 61 aa3.53□□□□□ -1.84
USP4-211ENST00000485450 R4GN34 69 aa3.52□□□□□ -1.85
USP4-211ENST00000485450 PP632Q6XCG6 107 aa3.51□□□□□ -1.85
USP4-211ENST00000485450 KRTAP9-2Q9BYQ4 174 aa3.51□□□□□ -1.85
USP4-211ENST00000485450 MT1FP04733 61 aa3.48□□□□□ -1.85
USP4-211ENST00000485450 SPRR2GQ9BYE4 73 aa3.42□□□□□ -1.86
USP4-211ENST00000485450 SSPOA2VEC9 5147 aa3.41□□□□□ -1.86
USP4-211ENST00000485450 KRTAP19-8Q3LI54 63 aa3.41□□□□□ -1.86
USP4-211ENST00000485450 KRTAP19-1Q8IUB9 90 aa3.39□□□□□ -1.87
USP4-211ENST00000485450 USH2AO75445 5202 aa3.38□□□□□ -1.87
USP4-211ENST00000485450 KRTAP19-6Q3LI70 58 aa3.38□□□□□ -1.87
USP4-211ENST00000485450 INE1O15225 51 aa3.36□□□□□ -1.87
USP4-211ENST00000485450 KRTAP9-6A0A140TA67 174 aa3.36□□□□□ -1.87
USP4-211ENST00000485450 CRCT1Q9UGL9 99 aa3.33□□□□□ -1.88
USP4-211ENST00000485450 MT1BP07438 61 aa3.3□□□□□ -1.88
USP4-211ENST00000485450 M0R2T5 61 aa3.29□□□□□ -1.88
USP4-211ENST00000485450 KRTAP10-10P60014 251 aa3.26□□□□□ -1.89
USP4-211ENST00000485450 TNP1P09430 55 aa3.23□□□□□ -1.89
USP4-211ENST00000485450 KRTAP10-5P60370 271 aa3.21□□□□□ -1.9
USP4-211ENST00000485450 FCGBPQ9Y6R7 5405 aaPredicted RBP3.19□□□□□ -1.9
USP4-211ENST00000485450 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.15□□□□□ -1.91
USP4-211ENST00000485450 MT1XP80297 61 aa3.12□□□□□ -1.91
USP4-211ENST00000485450 KRTAP5-9P26371 169 aa3.11□□□□□ -1.91
USP4-211ENST00000485450 KRTAP6-3Q3LI67 103 aa3.09□□□□□ -1.92
USP4-211ENST00000485450 KRTAP19-4Q3LI73 84 aa3.07□□□□□ -1.92
USP4-211ENST00000485450 KRTAP10-12P60413 245 aa3.06□□□□□ -1.92
USP4-211ENST00000485450 LCE5AQ5TCM9 118 aa3.03□□□□□ -1.92
USP4-211ENST00000485450 LCE3AQ5TA76 89 aa3.01□□□□□ -1.93
USP4-211ENST00000485450 KRTAP9-7A8MTY7 169 aa3□□□□□ -1.93
USP4-211ENST00000485450 LCE4AQ5TA78 99 aa2.97□□□□□ -1.93
USP4-211ENST00000485450 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
USP4-211ENST00000485450 KRTAP9-4Q9BYQ2 154 aa2.96□□□□□ -1.94
USP4-211ENST00000485450 MACF1Q9UPN3 7388 aaKnown RBP2.95□□□□□ -1.94
USP4-211ENST00000485450 KRTAP9-9Q9BYP9 154 aa2.93□□□□□ -1.94
USP4-211ENST00000485450 FSIP2Q5CZC0 6907 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms