RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 UQCR10Q9UDW1 63 aa2.31□□□□□ -2.04
UPF3A-205ENST00000479712 TRBV7-7A0A0K0K1E9 115 aa2.3□□□□□ -2.04
UPF3A-205ENST00000479712 FXYD2P54710 66 aa2.3□□□□□ -2.04
UPF3A-205ENST00000479712 PCOTHQ58A44 107 aa2.3□□□□□ -2.04
UPF3A-205ENST00000479712 SNHG12Q9BXW3 62 aa2.3□□□□□ -2.04
UPF3A-205ENST00000479712 SS18L2Q9UHA2 77 aa2.3□□□□□ -2.04
UPF3A-205ENST00000479712 COX6CP09669 75 aa2.29□□□□□ -2.04
UPF3A-205ENST00000479712 HRCT1Q6UXD1 115 aa2.29□□□□□ -2.04
UPF3A-205ENST00000479712 TEN1Q86WV5 123 aa2.29□□□□□ -2.04
UPF3A-205ENST00000479712 A0A1B0GW54 56 aa2.28□□□□□ -2.04
UPF3A-205ENST00000479712 DNAL4O96015 105 aa2.28□□□□□ -2.04
UPF3A-205ENST00000479712 TRACP01848 142 aa2.28□□□□□ -2.04
UPF3A-205ENST00000479712 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
UPF3A-205ENST00000479712 A0A0G2JQZ4 141 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 H3BMG7 143 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 TMEM256-PLSCR3K7ERE1 68 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 LST1O00453 97 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 SMIM6P0DI80 62 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 RPL37P61927 97 aaKnown RBP2.27□□□□□ -2.05
UPF3A-205ENST00000479712 ORMDL1Q9P0S3 153 aa2.27□□□□□ -2.05
UPF3A-205ENST00000479712 TRBV7-4A0A0J9YYF1 115 aa2.26□□□□□ -2.05
UPF3A-205ENST00000479712 H3BUT2 72 aa2.26□□□□□ -2.05
UPF3A-205ENST00000479712 M0R143 59 aa2.26□□□□□ -2.05
UPF3A-205ENST00000479712 FABP2P12104 132 aa2.26□□□□□ -2.05
UPF3A-205ENST00000479712 C9orf92A6NGG3 77 aa2.25□□□□□ -2.05
UPF3A-205ENST00000479712 K7ERJ3 54 aa2.25□□□□□ -2.05
UPF3A-205ENST00000479712 A0A087WSZ3 146 aa2.24□□□□□ -2.05
UPF3A-205ENST00000479712 PMAIP1Q13794 54 aa2.24□□□□□ -2.05
UPF3A-205ENST00000479712 ANKRD29Q8N6D5 301 aa2.24□□□□□ -2.05
UPF3A-205ENST00000479712 A6NN06 94 aa2.23□□□□□ -2.05
UPF3A-205ENST00000479712 A8MUN3 132 aa2.23□□□□□ -2.05
UPF3A-205ENST00000479712 LYRM7Q5U5X0 104 aa2.23□□□□□ -2.05
UPF3A-205ENST00000479712 Q96NJ1 140 aa2.23□□□□□ -2.05
UPF3A-205ENST00000479712 TRBV20-1A0A075B6N2 111 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 TSTD3H0UI37 97 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 JMJD7-PLA2G4BH0Y9G9 81 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 CCKP06307 115 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 PDE6GP18545 87 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 KRTAP12-3P60328 96 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 RBM3P98179 157 aaKnown RBP2.22□□□□□ -2.05
UPF3A-205ENST00000479712 ATXN8Q156A1 80 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 ATP11AUNQ6ZP68 121 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 LINC00472Q9H8W2 130 aa2.22□□□□□ -2.05
UPF3A-205ENST00000479712 J3KT08 172 aa2.21□□□□□ -2.06
UPF3A-205ENST00000479712 BAALC-AS2P0C853 105 aa2.21□□□□□ -2.06
UPF3A-205ENST00000479712 OBSCN-AS1Q96MR7 158 aa2.21□□□□□ -2.06
UPF3A-205ENST00000479712 DSCR8Q96T75 97 aa2.21□□□□□ -2.06
UPF3A-205ENST00000479712 LOC110117498A0A087WWA1 95 aa2.2□□□□□ -2.06
UPF3A-205ENST00000479712 LOC105371267A0A1B0GV96 52 aa2.2□□□□□ -2.06
UPF3A-205ENST00000479712 C9JAW5 83 aa2.2□□□□□ -2.06
UPF3A-205ENST00000479712 SIGMAR1Q99720 223 aa2.2□□□□□ -2.06
UPF3A-205ENST00000479712 PRO2289Q9P1D8 64 aa2.2□□□□□ -2.06
UPF3A-205ENST00000479712 MT4P47944 62 aa2.19□□□□□ -2.06
UPF3A-205ENST00000479712 Q6ZQT0 140 aa2.19□□□□□ -2.06
UPF3A-205ENST00000479712 H3BT86 120 aa2.18□□□□□ -2.06
UPF3A-205ENST00000479712 MUC5BQ9HC84 5762 aaPredicted RBP2.18□□□□□ -2.06
UPF3A-205ENST00000479712 A0A1B0GV72 72 aa2.17□□□□□ -2.06
UPF3A-205ENST00000479712 NDUFB1O75438 58 aa2.17□□□□□ -2.06
UPF3A-205ENST00000479712 NAA38Q9BRA0 125 aaKnown RBP2.17□□□□□ -2.06
UPF3A-205ENST00000479712 A0A1W2PPM0 123 aa2.16□□□□□ -2.06
UPF3A-205ENST00000479712 TAX1BP3O14907 124 aa2.16□□□□□ -2.06
UPF3A-205ENST00000479712 TMEM258P61165 79 aa2.16□□□□□ -2.06
UPF3A-205ENST00000479712 VPS25Q9BRG1 176 aa2.16□□□□□ -2.06
UPF3A-205ENST00000479712 C14orf132Q9NPU4 83 aa2.15□□□□□ -2.07
UPF3A-205ENST00000479712 TRAV7A0A075B6U4 112 aa2.14□□□□□ -2.07
UPF3A-205ENST00000479712 KRTAP12-1P59990 96 aa2.14□□□□□ -2.07
UPF3A-205ENST00000479712 NREPQ16612 68 aa2.14□□□□□ -2.07
UPF3A-205ENST00000479712 PRR15Q8IV56 129 aa2.14□□□□□ -2.07
UPF3A-205ENST00000479712 IGKV3D-7A0A0C4DH55 119 aa2.13□□□□□ -2.07
UPF3A-205ENST00000479712 COL5A1-AS1Q5SY13 56 aa2.13□□□□□ -2.07
UPF3A-205ENST00000479712 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
UPF3A-205ENST00000479712 HIST1H4AP62805 103 aaKnown RBP2.12□□□□□ -2.07
UPF3A-205ENST00000479712 KTN1-AS1Q86SY8 53 aa2.12□□□□□ -2.07
UPF3A-205ENST00000479712 TMEM254Q8TBM7 123 aa2.12□□□□□ -2.07
UPF3A-205ENST00000479712 SPCS1Q9Y6A9 102 aa2.12□□□□□ -2.07
UPF3A-205ENST00000479712 MUC5ACP98088 5654 aa2.12□□□□□ -2.07
UPF3A-205ENST00000479712 MMP24-AS1A0A0U1RRL7 71 aa2.11□□□□□ -2.07
UPF3A-205ENST00000479712 K7EP34 96 aa2.11□□□□□ -2.07
UPF3A-205ENST00000479712 KRTAP13-4Q3LI77 160 aa2.11□□□□□ -2.07
UPF3A-205ENST00000479712 MRPL34Q9BQ48 92 aaKnown RBP2.11□□□□□ -2.07
UPF3A-205ENST00000479712 hDV103S1A0JD37 113 aa2.1□□□□□ -2.07
UPF3A-205ENST00000479712 SPINK7P58062 85 aa2.1□□□□□ -2.07
UPF3A-205ENST00000479712 WFDC13Q8IUB5 93 aa2.1□□□□□ -2.07
UPF3A-205ENST00000479712 FAM236DA0A1B0GTK5 79 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 F8W1H4 67 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 K7EQZ3 153 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 FAM236CP0DP71 79 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 GTF2H5Q6ZYL4 71 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 UBL5Q9BZL1 73 aa2.09□□□□□ -2.07
UPF3A-205ENST00000479712 KRTAP12-4P60329 112 aa2.08□□□□□ -2.08
UPF3A-205ENST00000479712 CASC2Q6XLA1 102 aa2.07□□□□□ -2.08
UPF3A-205ENST00000479712 C7orf65Q6ZTY9 151 aa2.06□□□□□ -2.08
UPF3A-205ENST00000479712 HCG22E2RYF7 251 aa2.05□□□□□ -2.08
UPF3A-205ENST00000479712 ACYP1P07311 99 aa2.05□□□□□ -2.08
UPF3A-205ENST00000479712 TP53AIP1Q9HCN2 124 aa2.05□□□□□ -2.08
UPF3A-205ENST00000479712 ETDBQ3ZM63 59 aa2.04□□□□□ -2.08
UPF3A-205ENST00000479712 H1FX-AS1Q4G0G2 97 aa2.04□□□□□ -2.08
UPF3A-205ENST00000479712 KRTAP8-1Q8IUC2 63 aa2.04□□□□□ -2.08
UPF3A-205ENST00000479712 ATP5EP2Q5VTU8 51 aa2.03□□□□□ -2.08
UPF3A-205ENST00000479712 COA5Q86WW8 74 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms