RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 DNAH11Q96DT5 4516 aa6.6□□□□□ -1.35
NPHP4-208ENST00000478423 KRTAP3-2Q9BYR7 98 aa6.57□□□□□ -1.36
NPHP4-208ENST00000478423 DNAH1Q9P2D7 4330 aa6.52□□□□□ -1.37
NPHP4-208ENST00000478423 FAT1Q14517 4588 aa6.45□□□□□ -1.38
NPHP4-208ENST00000478423 ALMS1Q8TCU4 4167 aa6.41□□□□□ -1.38
NPHP4-208ENST00000478423 STARD9Q9P2P6 4700 aa6.4□□□□□ -1.39
NPHP4-208ENST00000478423 VPS13DQ5THJ4 4388 aa6.4□□□□□ -1.39
NPHP4-208ENST00000478423 DYNC1H1Q14204 4646 aaKnown RBP6.38□□□□□ -1.39
NPHP4-208ENST00000478423 PRKDCP78527 4128 aaKnown RBP6.35□□□□□ -1.39
NPHP4-208ENST00000478423 RYR1P21817 5038 aa6.34□□□□□ -1.39
NPHP4-208ENST00000478423 DNAH8Q96JB1 4490 aa6.34□□□□□ -1.4
NPHP4-208ENST00000478423 LRP1BQ9NZR2 4599 aa6.33□□□□□ -1.4
NPHP4-208ENST00000478423 DNAH17Q9UFH2 4485 aa6.31□□□□□ -1.4
NPHP4-208ENST00000478423 ANK2Q01484 3957 aa6.3□□□□□ -1.4
NPHP4-208ENST00000478423 LYSTQ99698 3801 aa6.27□□□□□ -1.41
NPHP4-208ENST00000478423 LORP23490 312 aaPredicted RBP6.25□□□□□ -1.41
NPHP4-208ENST00000478423 KIAA1109Q2LD37 5005 aa6.24□□□□□ -1.41
NPHP4-208ENST00000478423 MYCBP2O75592 4640 aa6.23□□□□□ -1.41
NPHP4-208ENST00000478423 KRTAP15-1Q3LI76 137 aa6.23□□□□□ -1.41
NPHP4-208ENST00000478423 DNAH2Q9P225 4427 aa6.22□□□□□ -1.41
NPHP4-208ENST00000478423 KMT2AQ03164 3969 aa6.19□□□□□ -1.42
NPHP4-208ENST00000478423 KRTAP4-1Q9BYQ7 146 aa6.18□□□□□ -1.42
NPHP4-208ENST00000478423 SACSQ9NZJ4 4579 aa6.16□□□□□ -1.42
NPHP4-208ENST00000478423 DNAH3Q8TD57 4116 aa6.16□□□□□ -1.42
NPHP4-208ENST00000478423 KRTAP10-12P60413 245 aa6.14□□□□□ -1.43
NPHP4-208ENST00000478423 FRAS1Q86XX4 4008 aa6.1□□□□□ -1.43
NPHP4-208ENST00000478423 RYR3Q15413 4870 aa6.08□□□□□ -1.44
NPHP4-208ENST00000478423 DYNC2H1Q8NCM8 4307 aaKnown RBP6.07□□□□□ -1.44
NPHP4-208ENST00000478423 FAT2Q9NYQ8 4349 aa6.07□□□□□ -1.44
NPHP4-208ENST00000478423 VPS13BQ7Z7G8 4022 aa6.03□□□□□ -1.44
NPHP4-208ENST00000478423 APOBP04114 4563 aaKnown RBP6.01□□□□□ -1.45
NPHP4-208ENST00000478423 CMYA5Q8N3K9 4069 aa6.01□□□□□ -1.45
NPHP4-208ENST00000478423 FAT3Q8TDW7 4589 aa6□□□□□ -1.45
NPHP4-208ENST00000478423 DNAH7Q8WXX0 4024 aa5.99□□□□□ -1.45
NPHP4-208ENST00000478423 KRTAP12-3P60328 96 aa5.99□□□□□ -1.45
NPHP4-208ENST00000478423 LCE3AQ5TA76 89 aa5.96□□□□□ -1.46
NPHP4-208ENST00000478423 DNAH6Q9C0G6 4158 aa5.96□□□□□ -1.46
NPHP4-208ENST00000478423 LRP1Q07954 4544 aaKnown RBP5.95□□□□□ -1.46
NPHP4-208ENST00000478423 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
NPHP4-208ENST00000478423 MT1HP80294 61 aa5.93□□□□□ -1.46
NPHP4-208ENST00000478423 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
NPHP4-208ENST00000478423 MT2AP02795 61 aa5.87□□□□□ -1.47
NPHP4-208ENST00000478423 CRCT1Q9UGL9 99 aa5.82□□□□□ -1.48
NPHP4-208ENST00000478423 SPRR2GQ9BYE4 73 aa5.8□□□□□ -1.48
NPHP4-208ENST00000478423 HERC2O95714 4834 aa5.8□□□□□ -1.48
NPHP4-208ENST00000478423 MT1FP04733 61 aa5.77□□□□□ -1.49
NPHP4-208ENST00000478423 HYDINQ4G0P3 5121 aa5.77□□□□□ -1.49
NPHP4-208ENST00000478423 RYR2Q92736 4967 aa5.77□□□□□ -1.49
NPHP4-208ENST00000478423 HECTD4Q9Y4D8 3996 aa5.76□□□□□ -1.49
NPHP4-208ENST00000478423 LRP2P98164 4655 aa5.74□□□□□ -1.49
NPHP4-208ENST00000478423 PKHD1P08F94 4074 aa5.71□□□□□ -1.5
NPHP4-208ENST00000478423 KMT2CQ8NEZ4 4911 aaKnown RBP5.69□□□□□ -1.5
NPHP4-208ENST00000478423 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
NPHP4-208ENST00000478423 INE1O15225 51 aa5.59□□□□□ -1.51
NPHP4-208ENST00000478423 KRTAP19-1Q8IUB9 90 aa5.55□□□□□ -1.52
NPHP4-208ENST00000478423 BIRC6Q9NR09 4857 aa5.54□□□□□ -1.52
NPHP4-208ENST00000478423 HSPG2P98160 4391 aa5.53□□□□□ -1.52
NPHP4-208ENST00000478423 PCLOQ9Y6V0 5065 aa5.52□□□□□ -1.53
NPHP4-208ENST00000478423 KRTAP19-8Q3LI54 63 aa5.44□□□□□ -1.54
NPHP4-208ENST00000478423 LPAP08519 4548 aa5.43□□□□□ -1.54
NPHP4-208ENST00000478423 KRTAP19-5Q3LI72 72 aa5.42□□□□□ -1.54
NPHP4-208ENST00000478423 PKD1P98161 4303 aa5.41□□□□□ -1.54
NPHP4-208ENST00000478423 HERC1Q15751 4861 aa5.4□□□□□ -1.55
NPHP4-208ENST00000478423 LCE2CQ5TA81 110 aa5.39□□□□□ -1.55
NPHP4-208ENST00000478423 KRTAP9-8Q9BYQ0 159 aa5.38□□□□□ -1.55
NPHP4-208ENST00000478423 EPPK1P58107 5090 aaKnown RBP5.36□□□□□ -1.55
NPHP4-208ENST00000478423 KRTAP10-5P60370 271 aa5.36□□□□□ -1.55
NPHP4-208ENST00000478423 KRTAP10-7P60409 375 aaPredicted RBP5.34□□□□□ -1.55
NPHP4-208ENST00000478423 SPRR2FQ96RM1 72 aa5.34□□□□□ -1.55
NPHP4-208ENST00000478423 MT1BP07438 61 aa5.32□□□□□ -1.56
NPHP4-208ENST00000478423 MT1XP80297 61 aa5.3□□□□□ -1.56
NPHP4-208ENST00000478423 LCE3CQ5T5A8 94 aa5.26□□□□□ -1.57
NPHP4-208ENST00000478423 ABCA13Q86UQ4 5058 aa5.26□□□□□ -1.57
NPHP4-208ENST00000478423 KRTAP19-2Q3LHN2 52 aa5.23□□□□□ -1.57
NPHP4-208ENST00000478423 KRTAP9-3Q9BYQ3 159 aa5.22□□□□□ -1.57
NPHP4-208ENST00000478423 MUC2Q02817 5179 aa5.17□□□□□ -1.58
NPHP4-208ENST00000478423 MUC17Q685J3 4493 aa5.16□□□□□ -1.58
NPHP4-208ENST00000478423 KRTAP4-8A0A0G2JLE6 195 aa5.12□□□□□ -1.59
NPHP4-208ENST00000478423 KRTAP19-4Q3LI73 84 aa5.12□□□□□ -1.59
NPHP4-208ENST00000478423 KRTAP4-8Q9BYQ9 185 aa5.12□□□□□ -1.59
NPHP4-208ENST00000478423 PKHD1L1Q86WI1 4243 aa5.12□□□□□ -1.59
NPHP4-208ENST00000478423 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
NPHP4-208ENST00000478423 TNXBP22105 4242 aa5.1□□□□□ -1.59
NPHP4-208ENST00000478423 FSIP2Q5CZC0 6907 aa5.08□□□□□ -1.6
NPHP4-208ENST00000478423 RNF213Q63HN8 5207 aa5.03□□□□□ -1.6
NPHP4-208ENST00000478423 FLGP20930 4061 aaPredicted RBP5.03□□□□□ -1.6
NPHP4-208ENST00000478423 LCE2BO14633 110 aa5.03□□□□□ -1.6
NPHP4-208ENST00000478423 FAT4Q6V0I7 4981 aa5.01□□□□□ -1.61
NPHP4-208ENST00000478423 SYNE1Q8NF91 8797 aaKnown RBP5□□□□□ -1.61
NPHP4-208ENST00000478423 SPRR2EP22531 72 aa4.93□□□□□ -1.62
NPHP4-208ENST00000478423 SPRR2BP35325 72 aa4.93□□□□□ -1.62
NPHP4-208ENST00000478423 SPRR2AP35326 72 aa4.93□□□□□ -1.62
NPHP4-208ENST00000478423 OBSCNQ5VST9 7968 aa4.92□□□□□ -1.62
NPHP4-208ENST00000478423 SPRR5A0A1B0GTR4 108 aa4.9□□□□□ -1.62
NPHP4-208ENST00000478423 MT1GP13640 62 aa4.9□□□□□ -1.63
NPHP4-208ENST00000478423 HMCN2Q8NDA2 5059 aa4.83□□□□□ -1.64
NPHP4-208ENST00000478423 LCE3BQ5TA77 95 aa4.81□□□□□ -1.64
NPHP4-208ENST00000478423 KRTAP4-7Q9BYR0 210 aa4.78□□□□□ -1.64
NPHP4-208ENST00000478423 LCE2AQ5TA79 106 aaPredicted RBP4.77□□□□□ -1.65
NPHP4-208ENST00000478423 MT1LQ93083 61 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms