RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SMR3BP02814 79 aaPredicted RBP1.43□□□□□ -2.18
VPS13D-207ENST00000476169 LINC01556Q5JQF7 62 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 Q6JHZ5 121 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 ENHOQ6UWT2 76 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 PKD1P98161 4303 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 TGP01266 2768 aa1.43□□□□□ -2.18
VPS13D-207ENST00000476169 FAT3Q8TDW7 4589 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 A0A087WVE0 104 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 BCE1O60756 84 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 LEPROTL1O95214 131 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 KRTAP10-4P60372 401 aaPredicted RBP1.42□□□□□ -2.18
VPS13D-207ENST00000476169 CNFNQ9BYD5 112 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 SPCS1Q9Y6A9 102 aa1.42□□□□□ -2.18
VPS13D-207ENST00000476169 ADIRFQ15847 76 aa1.41□□□□□ -2.18
VPS13D-207ENST00000476169 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
VPS13D-207ENST00000476169 LINC00472Q9H8W2 130 aa1.41□□□□□ -2.18
VPS13D-207ENST00000476169 PKHD1P08F94 4074 aa1.4□□□□□ -2.18
VPS13D-207ENST00000476169 SMIM27A0A1W2PRY6 76 aa1.4□□□□□ -2.19
VPS13D-207ENST00000476169 D6R8Y8 96 aa1.4□□□□□ -2.19
VPS13D-207ENST00000476169 POLR2KP53803 58 aaKnown RBP1.4□□□□□ -2.19
VPS13D-207ENST00000476169 MUSTN1Q8IVN3 82 aa1.4□□□□□ -2.19
VPS13D-207ENST00000476169 LRP1Q07954 4544 aaKnown RBP1.39□□□□□ -2.19
VPS13D-207ENST00000476169 A0A087WWC5 75 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 A0A1B0GUT8 65 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 RPL39P62891 51 aaKnown RBP1.39□□□□□ -2.19
VPS13D-207ENST00000476169 Q5VSD8 79 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 SPRR4Q96PI1 79 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 UBE2D4Q9Y2X8 147 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 CSMD3Q7Z407 3707 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 FRAS1Q86XX4 4008 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 UBR4Q5T4S7 5183 aa1.39□□□□□ -2.19
VPS13D-207ENST00000476169 LINC00959A0A1B0GUT2 108 aa1.38□□□□□ -2.19
VPS13D-207ENST00000476169 I3L3M4 83 aa1.38□□□□□ -2.19
VPS13D-207ENST00000476169 COX6A2Q02221 97 aa1.38□□□□□ -2.19
VPS13D-207ENST00000476169 ST20Q9HBF5 79 aa1.38□□□□□ -2.19
VPS13D-207ENST00000476169 LINC00846Q9NV44 126 aa1.38□□□□□ -2.19
VPS13D-207ENST00000476169 A0A096LNI7 61 aa1.37□□□□□ -2.19
VPS13D-207ENST00000476169 MT1HL1P0DM35 61 aa1.37□□□□□ -2.19
VPS13D-207ENST00000476169 LYSTQ99698 3801 aa1.37□□□□□ -2.19
VPS13D-207ENST00000476169 SMIM2Q9BVW6 85 aa1.37□□□□□ -2.19
VPS13D-207ENST00000476169 IGIPA6NJ69 53 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 FCER1GP30273 86 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 IFI27P40305 119 aaPredicted RBP1.36□□□□□ -2.19
VPS13D-207ENST00000476169 COL7A1Q02388 2944 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 SSBP3-AS1Q7Z2R9 100 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 C6orf48Q9UBA6 75 aa1.36□□□□□ -2.19
VPS13D-207ENST00000476169 PKHD1L1Q86WI1 4243 aa1.35□□□□□ -2.19
VPS13D-207ENST00000476169 LINC00643Q86TS7 51 aa1.35□□□□□ -2.19
VPS13D-207ENST00000476169 LINC01600Q96MT4 127 aa1.35□□□□□ -2.19
VPS13D-207ENST00000476169 PLAC8Q9NZF1 115 aa1.35□□□□□ -2.19
VPS13D-207ENST00000476169 ACYP1P07311 99 aa1.34□□□□□ -2.19
VPS13D-207ENST00000476169 C18orf32Q8TCD1 76 aa1.34□□□□□ -2.19
VPS13D-207ENST00000476169 CDKN2A-AS1Q9UH64 79 aa1.34□□□□□ -2.19
VPS13D-207ENST00000476169 TNXBP22105 4242 aa1.33□□□□□ -2.2
VPS13D-207ENST00000476169 A0A0D9SG42 100 aa1.33□□□□□ -2.2
VPS13D-207ENST00000476169 LINC01546A6NGU7 62 aa1.33□□□□□ -2.2
VPS13D-207ENST00000476169 H0Y9P7 68 aa1.33□□□□□ -2.2
VPS13D-207ENST00000476169 RNF213Q63HN8 5207 aa1.33□□□□□ -2.2
VPS13D-207ENST00000476169 MUC17Q685J3 4493 aa1.32□□□□□ -2.2
VPS13D-207ENST00000476169 IGLC3P0DOY3 106 aa1.32□□□□□ -2.2
VPS13D-207ENST00000476169 TOMM7Q9P0U1 55 aa1.32□□□□□ -2.2
VPS13D-207ENST00000476169 VPS13BQ7Z7G8 4022 aa1.32□□□□□ -2.2
VPS13D-207ENST00000476169 LRP2P98164 4655 aa1.31□□□□□ -2.2
VPS13D-207ENST00000476169 MYMXA0A1B0GTQ4 84 aa1.31□□□□□ -2.2
VPS13D-207ENST00000476169 NDUFA1O15239 70 aa1.31□□□□□ -2.2
VPS13D-207ENST00000476169 SPATA8Q6RVD6 105 aa1.31□□□□□ -2.2
VPS13D-207ENST00000476169 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
VPS13D-207ENST00000476169 Q8IZM0 81 aa1.3□□□□□ -2.2
VPS13D-207ENST00000476169 SMCO4Q9NRQ5 59 aa1.3□□□□□ -2.2
VPS13D-207ENST00000476169 LPAP08519 4548 aa1.3□□□□□ -2.2
VPS13D-207ENST00000476169 A0A1B0GU69 56 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 H3BUT2 72 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 K7EMI3 77 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 SMIM13P0DJ93 91 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 SPINK7P58062 85 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 PRLHP81277 87 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 SPINK6Q6UWN8 80 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 C10orf95Q9H7T3 257 aa1.29□□□□□ -2.2
VPS13D-207ENST00000476169 C3orf79P0CE67 100 aa1.27□□□□□ -2.21
VPS13D-207ENST00000476169 LINC00158P58513 81 aa1.27□□□□□ -2.21
VPS13D-207ENST00000476169 BVES-AS1Q5T3Y7 98 aa1.27□□□□□ -2.21
VPS13D-207ENST00000476169 SPRR1AP35321 89 aa1.26□□□□□ -2.21
VPS13D-207ENST00000476169 LINC01549A6NIU2 74 aa1.25□□□□□ -2.21
VPS13D-207ENST00000476169 LINC00308Q8TCZ7 52 aa1.25□□□□□ -2.21
VPS13D-207ENST00000476169 KRTAP4-1Q9BYQ7 146 aa1.25□□□□□ -2.21
VPS13D-207ENST00000476169 KCNQ1DNQ9H478 68 aa1.25□□□□□ -2.21
VPS13D-207ENST00000476169 DMBT1Q9UGM3 2413 aaPredicted RBP1.25□□□□□ -2.21
VPS13D-207ENST00000476169 MUC19Q7Z5P9 8384 aa1.25□□□□□ -2.21
VPS13D-207ENST00000476169 TRBV7-4A0A0J9YYF1 115 aa1.24□□□□□ -2.21
VPS13D-207ENST00000476169 PLNP26678 52 aa1.24□□□□□ -2.21
VPS13D-207ENST00000476169 TP53AIP1Q9HCN2 124 aa1.23□□□□□ -2.21
VPS13D-207ENST00000476169 ETDCA0A1B0GVM5 59 aa1.22□□□□□ -2.21
VPS13D-207ENST00000476169 SPRR1BP22528 89 aa1.21□□□□□ -2.22
VPS13D-207ENST00000476169 COX7BP24311 80 aa1.21□□□□□ -2.22
VPS13D-207ENST00000476169 DEFB105AQ8NG35 78 aa1.21□□□□□ -2.22
VPS13D-207ENST00000476169 MUC2Q02817 5179 aa1.21□□□□□ -2.22
VPS13D-207ENST00000476169 KRTAP19-2Q3LHN2 52 aa1.2□□□□□ -2.22
VPS13D-207ENST00000476169 SRRM2Q9UQ35 2752 aaKnown RBP1.19□□□□□ -2.22
VPS13D-207ENST00000476169 IGLV5-48A0A075B6I7 105 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms