RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 NUPR2A6NF83 97 aa2.38□□□□□ -2.03
VPS50-210ENST00000471188 RYR2Q92736 4967 aa2.38□□□□□ -2.03
VPS50-210ENST00000471188 FRAS1Q86XX4 4008 aa2.38□□□□□ -2.03
VPS50-210ENST00000471188 H1FX-AS1Q4G0G2 97 aa2.37□□□□□ -2.03
VPS50-210ENST00000471188 DNAH9Q9NYC9 4486 aa2.37□□□□□ -2.03
VPS50-210ENST00000471188 RYR3Q15413 4870 aa2.37□□□□□ -2.03
VPS50-210ENST00000471188 MGAM2Q2M2H8 2515 aa2.36□□□□□ -2.03
VPS50-210ENST00000471188 A0A087WTM6 91 aa2.36□□□□□ -2.03
VPS50-210ENST00000471188 SPACA4Q8TDM5 124 aa2.36□□□□□ -2.03
VPS50-210ENST00000471188 C10orf95Q9H7T3 257 aa2.36□□□□□ -2.03
VPS50-210ENST00000471188 A0A0D9SG42 100 aa2.35□□□□□ -2.03
VPS50-210ENST00000471188 DNAH8Q96JB1 4490 aa2.33□□□□□ -2.04
VPS50-210ENST00000471188 TPRXLQ17RH7 258 aa2.33□□□□□ -2.04
VPS50-210ENST00000471188 SACSQ9NZJ4 4579 aa2.33□□□□□ -2.04
VPS50-210ENST00000471188 PKHD1L1Q86WI1 4243 aa2.33□□□□□ -2.04
VPS50-210ENST00000471188 LUZP6Q538Z0 58 aa2.32□□□□□ -2.04
VPS50-210ENST00000471188 BIRC6Q9NR09 4857 aa2.32□□□□□ -2.04
VPS50-210ENST00000471188 COX6B2Q6YFQ2 88 aa2.32□□□□□ -2.04
VPS50-210ENST00000471188 DNAH17Q9UFH2 4485 aa2.32□□□□□ -2.04
VPS50-210ENST00000471188 APLNQ9ULZ1 77 aa2.32□□□□□ -2.04
VPS50-210ENST00000471188 RPL37P61927 97 aaKnown RBP2.31□□□□□ -2.04
VPS50-210ENST00000471188 HUWE1Q7Z6Z7 4374 aaKnown RBP2.31□□□□□ -2.04
VPS50-210ENST00000471188 NBDYA0A0U1RRE5 68 aa2.3□□□□□ -2.04
VPS50-210ENST00000471188 KMT2CQ8NEZ4 4911 aaKnown RBP2.29□□□□□ -2.04
VPS50-210ENST00000471188 VPS13DQ5THJ4 4388 aa2.29□□□□□ -2.04
VPS50-210ENST00000471188 KMT2AQ03164 3969 aa2.29□□□□□ -2.04
VPS50-210ENST00000471188 HERC2O95714 4834 aa2.28□□□□□ -2.04
VPS50-210ENST00000471188 KRTAP24-1Q3LI83 254 aa2.28□□□□□ -2.04
VPS50-210ENST00000471188 DNAH2Q9P225 4427 aa2.28□□□□□ -2.04
VPS50-210ENST00000471188 VPS13BQ7Z7G8 4022 aa2.28□□□□□ -2.04
VPS50-210ENST00000471188 KRTAP13-2Q52LG2 175 aa2.27□□□□□ -2.05
VPS50-210ENST00000471188 C9orf92A6NGG3 77 aa2.26□□□□□ -2.05
VPS50-210ENST00000471188 Q6ZRN7 208 aaPredicted RBP2.26□□□□□ -2.05
VPS50-210ENST00000471188 DYNC1H1Q14204 4646 aaKnown RBP2.26□□□□□ -2.05
VPS50-210ENST00000471188 PKHD1P08F94 4074 aa2.25□□□□□ -2.05
VPS50-210ENST00000471188 HYDINQ4G0P3 5121 aa2.24□□□□□ -2.05
VPS50-210ENST00000471188 STARD9Q9P2P6 4700 aa2.24□□□□□ -2.05
VPS50-210ENST00000471188 PLECQ15149 4684 aaKnown RBP2.24□□□□□ -2.05
VPS50-210ENST00000471188 EPPK1P58107 5090 aaKnown RBP2.23□□□□□ -2.05
VPS50-210ENST00000471188 KRTAP13-4Q3LI77 160 aa2.23□□□□□ -2.05
VPS50-210ENST00000471188 FAT3Q8TDW7 4589 aa2.23□□□□□ -2.05
VPS50-210ENST00000471188 PKD1P98161 4303 aa2.22□□□□□ -2.05
VPS50-210ENST00000471188 S4R3F8 94 aa2.22□□□□□ -2.05
VPS50-210ENST00000471188 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
VPS50-210ENST00000471188 KRTAP12-2P59991 146 aa2.19□□□□□ -2.06
VPS50-210ENST00000471188 KRTAP10-6P60371 365 aaPredicted RBP2.19□□□□□ -2.06
VPS50-210ENST00000471188 DNAH11Q96DT5 4516 aa2.19□□□□□ -2.06
VPS50-210ENST00000471188 KRTAP1-4P0C5Y4 121 aa2.17□□□□□ -2.06
VPS50-210ENST00000471188 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.17□□□□□ -2.06
VPS50-210ENST00000471188 PLAC4Q8WY50 150 aa2.16□□□□□ -2.06
VPS50-210ENST00000471188 PCLOQ9Y6V0 5065 aa2.16□□□□□ -2.06
VPS50-210ENST00000471188 LRP1BQ9NZR2 4599 aa2.15□□□□□ -2.07
VPS50-210ENST00000471188 KRTAP12-1P59990 96 aa2.14□□□□□ -2.07
VPS50-210ENST00000471188 SEC61BP60468 96 aaKnown RBP2.14□□□□□ -2.07
VPS50-210ENST00000471188 ABCA13Q86UQ4 5058 aa2.13□□□□□ -2.07
VPS50-210ENST00000471188 KRTAP10-1P60331 282 aa2.12□□□□□ -2.07
VPS50-210ENST00000471188 LCE1AQ5T7P2 110 aa2.12□□□□□ -2.07
VPS50-210ENST00000471188 HSPG2P98160 4391 aa2.11□□□□□ -2.07
VPS50-210ENST00000471188 KRTAP10-8P60410 259 aa2.11□□□□□ -2.07
VPS50-210ENST00000471188 RYR1P21817 5038 aa2.1□□□□□ -2.07
VPS50-210ENST00000471188 KRTAP10-7P60409 375 aaPredicted RBP2.1□□□□□ -2.07
VPS50-210ENST00000471188 APOBP04114 4563 aaKnown RBP2.1□□□□□ -2.07
VPS50-210ENST00000471188 DNAH5Q8TE73 4624 aa2.1□□□□□ -2.07
VPS50-210ENST00000471188 FAT1Q14517 4588 aa2.09□□□□□ -2.08
VPS50-210ENST00000471188 SMR3BP02814 79 aaPredicted RBP2.09□□□□□ -2.08
VPS50-210ENST00000471188 RPS29P62273 56 aaKnown RBP2.08□□□□□ -2.08
VPS50-210ENST00000471188 M0QZ58 72 aa2.07□□□□□ -2.08
VPS50-210ENST00000471188 TNXBP22105 4242 aa2.06□□□□□ -2.08
VPS50-210ENST00000471188 KIAA1109Q2LD37 5005 aa2.06□□□□□ -2.08
VPS50-210ENST00000471188 R4GN34 69 aa2.04□□□□□ -2.08
VPS50-210ENST00000471188 KRTAP2-2Q9BYT5 123 aa2.03□□□□□ -2.08
VPS50-210ENST00000471188 A0A1B0GVY2 172 aa2.03□□□□□ -2.08
VPS50-210ENST00000471188 KRTAP5-11Q6L8G4 156 aa2.02□□□□□ -2.09
VPS50-210ENST00000471188 CAMK2N1Q7Z7J9 78 aa2.02□□□□□ -2.09
VPS50-210ENST00000471188 MYCBP2O75592 4640 aa2.02□□□□□ -2.09
VPS50-210ENST00000471188 LCE1EQ5T753 118 aa2.02□□□□□ -2.09
VPS50-210ENST00000471188 PP632Q6XCG6 107 aa1.99□□□□□ -2.09
VPS50-210ENST00000471188 LRP1Q07954 4544 aaKnown RBP1.98□□□□□ -2.09
VPS50-210ENST00000471188 MUC17Q685J3 4493 aa1.98□□□□□ -2.09
VPS50-210ENST00000471188 PRO2289Q9P1D8 64 aa1.96□□□□□ -2.1
VPS50-210ENST00000471188 HMCN2Q8NDA2 5059 aa1.96□□□□□ -2.1
VPS50-210ENST00000471188 GPR98Q8WXG9 6306 aa1.95□□□□□ -2.1
VPS50-210ENST00000471188 LPAP08519 4548 aa1.93□□□□□ -2.1
VPS50-210ENST00000471188 TNP1P09430 55 aa1.9□□□□□ -2.11
VPS50-210ENST00000471188 MUC5BQ9HC84 5762 aaPredicted RBP1.9□□□□□ -2.11
VPS50-210ENST00000471188 MT3P25713 68 aa1.89□□□□□ -2.11
VPS50-210ENST00000471188 LRP2P98164 4655 aa1.89□□□□□ -2.11
VPS50-210ENST00000471188 KRTAP10-4P60372 401 aaPredicted RBP1.88□□□□□ -2.11
VPS50-210ENST00000471188 INE1O15225 51 aa1.88□□□□□ -2.11
VPS50-210ENST00000471188 SPRR5A0A1B0GTR4 108 aa1.86□□□□□ -2.11
VPS50-210ENST00000471188 HERC1Q15751 4861 aa1.86□□□□□ -2.11
VPS50-210ENST00000471188 FLGP20930 4061 aaPredicted RBP1.86□□□□□ -2.11
VPS50-210ENST00000471188 KRTAP5-9P26371 169 aa1.83□□□□□ -2.12
VPS50-210ENST00000471188 Q5VSD8 79 aa1.82□□□□□ -2.12
VPS50-210ENST00000471188 KRTAP5-4Q6L8H1 288 aa1.82□□□□□ -2.12
VPS50-210ENST00000471188 KRTAP5-1Q6L8H4 278 aa1.81□□□□□ -2.12
VPS50-210ENST00000471188 FAT4Q6V0I7 4981 aa1.8□□□□□ -2.12
VPS50-210ENST00000471188 OBSCNQ5VST9 7968 aa1.78□□□□□ -2.12
VPS50-210ENST00000471188 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
VPS50-210ENST00000471188 KRTAP10-5P60370 271 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms