RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 INE1O15225 51 aa6.94□□□□□ -1.3
LIMS2-213ENST00000469300 ALMS1Q8TCU4 4167 aa6.9□□□□□ -1.31
LIMS2-213ENST00000469300 DNAH1Q9P2D7 4330 aa6.89□□□□□ -1.31
LIMS2-213ENST00000469300 DNAH5Q8TE73 4624 aa6.87□□□□□ -1.31
LIMS2-213ENST00000469300 KRTAP3-3Q9BYR6 98 aa6.85□□□□□ -1.31
LIMS2-213ENST00000469300 KRTAP3-2Q9BYR7 98 aa6.81□□□□□ -1.32
LIMS2-213ENST00000469300 STARD9Q9P2P6 4700 aa6.78□□□□□ -1.32
LIMS2-213ENST00000469300 FAT1Q14517 4588 aa6.75□□□□□ -1.33
LIMS2-213ENST00000469300 PRKDCP78527 4128 aaKnown RBP6.68□□□□□ -1.34
LIMS2-213ENST00000469300 VPS13DQ5THJ4 4388 aa6.68□□□□□ -1.34
LIMS2-213ENST00000469300 DNAH8Q96JB1 4490 aa6.68□□□□□ -1.34
LIMS2-213ENST00000469300 LRP1BQ9NZR2 4599 aa6.66□□□□□ -1.34
LIMS2-213ENST00000469300 ANK2Q01484 3957 aa6.62□□□□□ -1.35
LIMS2-213ENST00000469300 DNAH17Q9UFH2 4485 aa6.62□□□□□ -1.35
LIMS2-213ENST00000469300 KMT2AQ03164 3969 aa6.62□□□□□ -1.35
LIMS2-213ENST00000469300 KRTAP10-12P60413 245 aa6.6□□□□□ -1.35
LIMS2-213ENST00000469300 LYSTQ99698 3801 aa6.59□□□□□ -1.35
LIMS2-213ENST00000469300 DYNC1H1Q14204 4646 aaKnown RBP6.59□□□□□ -1.35
LIMS2-213ENST00000469300 DNAH2Q9P225 4427 aa6.55□□□□□ -1.36
LIMS2-213ENST00000469300 LORP23490 312 aaPredicted RBP6.52□□□□□ -1.37
LIMS2-213ENST00000469300 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
LIMS2-213ENST00000469300 KRTAP23-1A1A580 65 aa6.51□□□□□ -1.37
LIMS2-213ENST00000469300 RYR1P21817 5038 aa6.5□□□□□ -1.37
LIMS2-213ENST00000469300 KIAA1109Q2LD37 5005 aa6.41□□□□□ -1.38
LIMS2-213ENST00000469300 FRAS1Q86XX4 4008 aa6.39□□□□□ -1.39
LIMS2-213ENST00000469300 SACSQ9NZJ4 4579 aa6.39□□□□□ -1.39
LIMS2-213ENST00000469300 KRTAP12-3P60328 96 aa6.39□□□□□ -1.39
LIMS2-213ENST00000469300 DNAH3Q8TD57 4116 aa6.38□□□□□ -1.39
LIMS2-213ENST00000469300 VPS13BQ7Z7G8 4022 aa6.38□□□□□ -1.39
LIMS2-213ENST00000469300 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
LIMS2-213ENST00000469300 DNAH7Q8WXX0 4024 aa6.34□□□□□ -1.39
LIMS2-213ENST00000469300 DNAH6Q9C0G6 4158 aa6.33□□□□□ -1.4
LIMS2-213ENST00000469300 MT1HP80294 61 aa6.33□□□□□ -1.4
LIMS2-213ENST00000469300 DYNC2H1Q8NCM8 4307 aaKnown RBP6.31□□□□□ -1.4
LIMS2-213ENST00000469300 FAT3Q8TDW7 4589 aa6.31□□□□□ -1.4
LIMS2-213ENST00000469300 LRP1Q07954 4544 aaKnown RBP6.3□□□□□ -1.4
LIMS2-213ENST00000469300 CMYA5Q8N3K9 4069 aa6.3□□□□□ -1.4
LIMS2-213ENST00000469300 FAT2Q9NYQ8 4349 aa6.27□□□□□ -1.41
LIMS2-213ENST00000469300 APOBP04114 4563 aaKnown RBP6.27□□□□□ -1.41
LIMS2-213ENST00000469300 LCE3AQ5TA76 89 aa6.26□□□□□ -1.41
LIMS2-213ENST00000469300 MT2AP02795 61 aa6.23□□□□□ -1.41
LIMS2-213ENST00000469300 RYR3Q15413 4870 aa6.22□□□□□ -1.41
LIMS2-213ENST00000469300 SPRR2GQ9BYE4 73 aa6.21□□□□□ -1.41
LIMS2-213ENST00000469300 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
LIMS2-213ENST00000469300 HECTD4Q9Y4D8 3996 aa6.2□□□□□ -1.42
LIMS2-213ENST00000469300 KRTAP8-1Q8IUC2 63 aa6.19□□□□□ -1.42
LIMS2-213ENST00000469300 HYDINQ4G0P3 5121 aa6.17□□□□□ -1.42
LIMS2-213ENST00000469300 CRCT1Q9UGL9 99 aa6.11□□□□□ -1.43
LIMS2-213ENST00000469300 PKHD1P08F94 4074 aa6.09□□□□□ -1.43
LIMS2-213ENST00000469300 MT1FP04733 61 aa6.07□□□□□ -1.44
LIMS2-213ENST00000469300 LRP2P98164 4655 aa6.03□□□□□ -1.44
LIMS2-213ENST00000469300 RYR2Q92736 4967 aa5.95□□□□□ -1.46
LIMS2-213ENST00000469300 KRTAP19-4Q3LI73 84 aa5.88□□□□□ -1.47
LIMS2-213ENST00000469300 HERC2O95714 4834 aa5.86□□□□□ -1.47
LIMS2-213ENST00000469300 KRTAP19-8Q3LI54 63 aa5.86□□□□□ -1.47
LIMS2-213ENST00000469300 KMT2CQ8NEZ4 4911 aaKnown RBP5.86□□□□□ -1.47
LIMS2-213ENST00000469300 BIRC6Q9NR09 4857 aa5.8□□□□□ -1.48
LIMS2-213ENST00000469300 KRTAP10-5P60370 271 aa5.79□□□□□ -1.48
LIMS2-213ENST00000469300 KRTAP19-1Q8IUB9 90 aa5.78□□□□□ -1.48
LIMS2-213ENST00000469300 HSPG2P98160 4391 aa5.77□□□□□ -1.49
LIMS2-213ENST00000469300 LPAP08519 4548 aa5.76□□□□□ -1.49
LIMS2-213ENST00000469300 SPRR2FQ96RM1 72 aa5.76□□□□□ -1.49
LIMS2-213ENST00000469300 PKD1P98161 4303 aa5.76□□□□□ -1.49
LIMS2-213ENST00000469300 KRTAP19-5Q3LI72 72 aa5.71□□□□□ -1.5
LIMS2-213ENST00000469300 KRTAP10-7P60409 375 aaPredicted RBP5.68□□□□□ -1.5
LIMS2-213ENST00000469300 HERC1Q15751 4861 aa5.67□□□□□ -1.5
LIMS2-213ENST00000469300 KRTAP9-8Q9BYQ0 159 aa5.65□□□□□ -1.5
LIMS2-213ENST00000469300 LCE2CQ5TA81 110 aa5.63□□□□□ -1.51
LIMS2-213ENST00000469300 LCE3CQ5T5A8 94 aa5.6□□□□□ -1.51
LIMS2-213ENST00000469300 MT1BP07438 61 aa5.58□□□□□ -1.52
LIMS2-213ENST00000469300 MT1XP80297 61 aa5.55□□□□□ -1.52
LIMS2-213ENST00000469300 PCLOQ9Y6V0 5065 aa5.55□□□□□ -1.52
LIMS2-213ENST00000469300 EPPK1P58107 5090 aaKnown RBP5.55□□□□□ -1.52
LIMS2-213ENST00000469300 KRTAP9-3Q9BYQ3 159 aa5.53□□□□□ -1.52
LIMS2-213ENST00000469300 ABCA13Q86UQ4 5058 aa5.48□□□□□ -1.53
LIMS2-213ENST00000469300 PKHD1L1Q86WI1 4243 aa5.47□□□□□ -1.53
LIMS2-213ENST00000469300 TNXBP22105 4242 aa5.46□□□□□ -1.54
LIMS2-213ENST00000469300 SPRR2EP22531 72 aa5.43□□□□□ -1.54
LIMS2-213ENST00000469300 SPRR2BP35325 72 aa5.43□□□□□ -1.54
LIMS2-213ENST00000469300 SPRR2AP35326 72 aa5.43□□□□□ -1.54
LIMS2-213ENST00000469300 KRTAP19-2Q3LHN2 52 aa5.4□□□□□ -1.54
LIMS2-213ENST00000469300 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
LIMS2-213ENST00000469300 MT1GP13640 62 aa5.33□□□□□ -1.56
LIMS2-213ENST00000469300 MUC2Q02817 5179 aa5.32□□□□□ -1.56
LIMS2-213ENST00000469300 MUC17Q685J3 4493 aa5.32□□□□□ -1.56
LIMS2-213ENST00000469300 FSIP2Q5CZC0 6907 aa5.29□□□□□ -1.56
LIMS2-213ENST00000469300 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
LIMS2-213ENST00000469300 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
LIMS2-213ENST00000469300 LCE2BO14633 110 aa5.27□□□□□ -1.57
LIMS2-213ENST00000469300 SPRR2DP22532 72 aa5.26□□□□□ -1.57
LIMS2-213ENST00000469300 RNF213Q63HN8 5207 aa5.26□□□□□ -1.57
LIMS2-213ENST00000469300 UBR4Q5T4S7 5183 aa5.26□□□□□ -1.57
LIMS2-213ENST00000469300 FAT4Q6V0I7 4981 aa5.2□□□□□ -1.58
LIMS2-213ENST00000469300 FLGP20930 4061 aaPredicted RBP5.19□□□□□ -1.58
LIMS2-213ENST00000469300 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
LIMS2-213ENST00000469300 KRTAP19-6Q3LI70 58 aa5.13□□□□□ -1.59
LIMS2-213ENST00000469300 KRTAP19-3Q7Z4W3 81 aa5.12□□□□□ -1.59
LIMS2-213ENST00000469300 LCE2AQ5TA79 106 aaPredicted RBP5.1□□□□□ -1.59
LIMS2-213ENST00000469300 LCE2DQ5TA82 110 aaPredicted RBP5.07□□□□□ -1.6
LIMS2-213ENST00000469300 HMCN2Q8NDA2 5059 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 258.7 ms