RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MED9Q9NWA0 146 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 ARL2-SNX15V9GYD0 113 aa1.77□□□□□ -2.13
HMGB1-207ENST00000468384 TRAV23DV6A0A075B6W5 121 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 NAP1L6A6NFF2 107 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 M0QY20 66 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 ATOX1O00244 68 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 MT1EP04732 61 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 PDE6GP18545 87 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 KRTDAPP60985 99 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 PEA15Q15121 130 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 CYP4F30PQ9H0H9 118 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 CDC42SE2Q9NRR3 84 aa1.76□□□□□ -2.13
HMGB1-207ENST00000468384 TRBV7-7A0A0K0K1E9 115 aa1.75□□□□□ -2.13
HMGB1-207ENST00000468384 PP632Q6XCG6 107 aa1.75□□□□□ -2.13
HMGB1-207ENST00000468384 SFT2D2O95562 160 aa1.74□□□□□ -2.13
HMGB1-207ENST00000468384 MT1MQ8N339 61 aa1.74□□□□□ -2.13
HMGB1-207ENST00000468384 Q96NJ1 140 aa1.74□□□□□ -2.13
HMGB1-207ENST00000468384 MANBALQ9NQG1 85 aa1.74□□□□□ -2.13
HMGB1-207ENST00000468384 LOC101927531A0A1B0GV80 90 aa1.73□□□□□ -2.13
HMGB1-207ENST00000468384 APOC3P02656 99 aa1.73□□□□□ -2.13
HMGB1-207ENST00000468384 C20orf197Q8N268 126 aa1.73□□□□□ -2.13
HMGB1-207ENST00000468384 MGST2Q99735 147 aa1.73□□□□□ -2.13
HMGB1-207ENST00000468384 HIGD1CA8MV81 97 aa1.72□□□□□ -2.13
HMGB1-207ENST00000468384 KRTAP19-7Q3SYF9 63 aa1.72□□□□□ -2.13
HMGB1-207ENST00000468384 ALKAL2Q6UX46 152 aa1.72□□□□□ -2.13
HMGB1-207ENST00000468384 SERP2Q8N6R1 65 aa1.72□□□□□ -2.13
HMGB1-207ENST00000468384 S100A16Q96FQ6 103 aaKnown RBP1.72□□□□□ -2.13
HMGB1-207ENST00000468384 SYS1-DBNDD2H3BUS1 97 aa1.71□□□□□ -2.14
HMGB1-207ENST00000468384 SFTA2Q6UW10 78 aa1.71□□□□□ -2.14
HMGB1-207ENST00000468384 ZNF625Q96I27 306 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-207ENST00000468384 FAM167A-AS1Q96KT0 104 aa1.71□□□□□ -2.14
HMGB1-207ENST00000468384 TRAV22A0A0B4J277 110 aa1.7□□□□□ -2.14
HMGB1-207ENST00000468384 IGKV3D-7A0A0C4DH55 119 aa1.7□□□□□ -2.14
HMGB1-207ENST00000468384 CHKB-CPT1BH3BT56 60 aa1.7□□□□□ -2.14
HMGB1-207ENST00000468384 INE1O15225 51 aa1.7□□□□□ -2.14
HMGB1-207ENST00000468384 SSBP1Q04837 148 aaKnown RBP1.7□□□□□ -2.14
HMGB1-207ENST00000468384 NXT2Q9NPJ8 142 aaKnown RBP1.7□□□□□ -2.14
HMGB1-207ENST00000468384 NDUFC1O43677 76 aa1.69□□□□□ -2.14
HMGB1-207ENST00000468384 SPATA45Q537H7 98 aa1.69□□□□□ -2.14
HMGB1-207ENST00000468384 DEFB107AQ8IZN7 70 aa1.69□□□□□ -2.14
HMGB1-207ENST00000468384 PRO1854Q9UHT4 67 aa1.69□□□□□ -2.14
HMGB1-207ENST00000468384 H7BZZ5 65 aa1.68□□□□□ -2.14
HMGB1-207ENST00000468384 PDCD5O14737 125 aa1.68□□□□□ -2.14
HMGB1-207ENST00000468384 COX7B2Q8TF08 81 aa1.68□□□□□ -2.14
HMGB1-207ENST00000468384 HIGD1BQ9P298 99 aa1.68□□□□□ -2.14
HMGB1-207ENST00000468384 UQCR10Q9UDW1 63 aa1.68□□□□□ -2.14
HMGB1-207ENST00000468384 LOC110117498A0A087WWA1 95 aa1.67□□□□□ -2.14
HMGB1-207ENST00000468384 PPP1R17O96001 155 aa1.67□□□□□ -2.14
HMGB1-207ENST00000468384 MGPP08493 103 aa1.67□□□□□ -2.14
HMGB1-207ENST00000468384 SPCS1Q9Y6A9 102 aa1.67□□□□□ -2.14
HMGB1-207ENST00000468384 ELOF1P60002 83 aaKnown RBP1.66□□□□□ -2.14
HMGB1-207ENST00000468384 KRTAP13-4Q3LI77 160 aa1.66□□□□□ -2.14
HMGB1-207ENST00000468384 ETDBQ3ZM63 59 aa1.66□□□□□ -2.14
HMGB1-207ENST00000468384 LINC00208Q96KT6 92 aa1.66□□□□□ -2.14
HMGB1-207ENST00000468384 SNURFQ9Y675 71 aa1.66□□□□□ -2.14
HMGB1-207ENST00000468384 COX6CP09669 75 aa1.65□□□□□ -2.15
HMGB1-207ENST00000468384 KLKP1Q107X0 134 aa1.64□□□□□ -2.15
HMGB1-207ENST00000468384 ADIRFQ15847 76 aa1.64□□□□□ -2.15
HMGB1-207ENST00000468384 ST20Q9HBF5 79 aa1.64□□□□□ -2.15
HMGB1-207ENST00000468384 V9GYH0 126 aa1.64□□□□□ -2.15
HMGB1-207ENST00000468384 TRAV1-2A0A0B4J238 106 aa1.63□□□□□ -2.15
HMGB1-207ENST00000468384 CRIP1P50238 77 aa1.63□□□□□ -2.15
HMGB1-207ENST00000468384 PMCHL1Q16048 86 aa1.63□□□□□ -2.15
HMGB1-207ENST00000468384 Q5BKY6 102 aa1.63□□□□□ -2.15
HMGB1-207ENST00000468384 V9GYV3 84 aa1.63□□□□□ -2.15
HMGB1-207ENST00000468384 A0A1W2PPM0 123 aa1.62□□□□□ -2.15
HMGB1-207ENST00000468384 KRTAP12-1P59990 96 aa1.62□□□□□ -2.15
HMGB1-207ENST00000468384 PSENENQ9NZ42 101 aa1.62□□□□□ -2.15
HMGB1-207ENST00000468384 H1FX-AS1Q4G0G2 97 aa1.61□□□□□ -2.15
HMGB1-207ENST00000468384 TMEM170BQ5T4T1 132 aa1.61□□□□□ -2.15
HMGB1-207ENST00000468384 BVES-AS1Q5T3Y7 98 aa1.6□□□□□ -2.15
HMGB1-207ENST00000468384 PPP1R1CQ8WVI7 109 aa1.6□□□□□ -2.15
HMGB1-207ENST00000468384 ETDCA0A1B0GVM5 59 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 SMIM31A0A1B0GVY4 71 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 ZNF815PA8K554 130 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 F2Z2F3 143 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 F8VRH5 84 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 F8WEM9 126 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 H3BUT2 72 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 IGLC3P0DOY3 106 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 Q6ZQY7 126 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 WFDC13Q8IUB5 93 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 PLAC4Q8WY50 150 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 SMCO4Q9NRQ5 59 aa1.59□□□□□ -2.15
HMGB1-207ENST00000468384 SPRR1AP35321 89 aa1.58□□□□□ -2.16
HMGB1-207ENST00000468384 TOMM7Q9P0U1 55 aa1.58□□□□□ -2.16
HMGB1-207ENST00000468384 CTXND1A0A1B0GTU2 59 aa1.57□□□□□ -2.16
HMGB1-207ENST00000468384 KANTRA0A1W2PQU2 76 aa1.57□□□□□ -2.16
HMGB1-207ENST00000468384 AMELXQ99217 191 aa1.57□□□□□ -2.16
HMGB1-207ENST00000468384 PRR15LQ9BU68 103 aa1.57□□□□□ -2.16
HMGB1-207ENST00000468384 C7orf77A4D0Y5 90 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 I3L3M4 83 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 SPINK7P58062 85 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 BAGE3Q86Y29 109 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 BAGE2Q86Y30 109 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 LINC01558Q9Y6Z2 57 aa1.56□□□□□ -2.16
HMGB1-207ENST00000468384 LINC00643Q86TS7 51 aa1.55□□□□□ -2.16
HMGB1-207ENST00000468384 Q8IZM0 81 aa1.55□□□□□ -2.16
HMGB1-207ENST00000468384 RPL39LQ96EH5 51 aaKnown RBP1.55□□□□□ -2.16
HMGB1-207ENST00000468384 CRIPTQ9P021 101 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 166.9 ms